RNA–Protein interactions for RNA: ENST00000428848.7

CDH13-202, Transcript of cadherin 13, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CDH13, Length 2,195 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13-202ENST00000428848 NISCHQ9Y2I1 1504 aa18.17■□□□□ 0.5
CDH13-202ENST00000428848 CCDC180Q9P1Z9 1646 aa15.77■□□□□ 0.12
CDH13-202ENST00000428848 ZCCHC6Q5VYS8 1495 aaKnown RBP15.34■□□□□ 0.05
CDH13-202ENST00000428848 ABCC9O60706 1549 aa15.27■□□□□ 0.03
CDH13-202ENST00000428848 SHROOM4Q9ULL8 1493 aa15.25■□□□□ 0.03
CDH13-202ENST00000428848 DCAF1Q9Y4B6 1507 aa15.1■□□□□ 0.01
CDH13-202ENST00000428848 SUPT5HO00267 1087 aaKnown RBP15.03■□□□□ -0
CDH13-202ENST00000428848 DCAF8L2P0C7V8 631 aa14.91□□□□□ -0.02
CDH13-202ENST00000428848 MYO15BQ96JP2 1530 aa14.82□□□□□ -0.04
CDH13-202ENST00000428848 CHIC1Q5VXU3 224 aa14.81□□□□□ -0.04
CDH13-202ENST00000428848 HRCP23327 699 aa14.65□□□□□ -0.06
CDH13-202ENST00000428848 NACADO15069 1562 aa14.58□□□□□ -0.07
CDH13-202ENST00000428848 RB1CC1Q8TDY2 1594 aa14.5□□□□□ -0.09
CDH13-202ENST00000428848 PCGF6Q9BYE7 350 aa14.44□□□□□ -0.1
CDH13-202ENST00000428848 SCRIBQ14160 1630 aa14.44□□□□□ -0.1
CDH13-202ENST00000428848 PELP1Q8IZL8 1130 aaKnown RBP14.43□□□□□ -0.1
CDH13-202ENST00000428848 DNAJC5BQ9UF47 199 aa14.33□□□□□ -0.12
CDH13-202ENST00000428848 LOC105371045A0A1W2PR82 267 aa14.32□□□□□ -0.12
CDH13-202ENST00000428848 PABPN1Q86U42 306 aaKnown RBP eCLIP14.28□□□□□ -0.12
CDH13-202ENST00000428848 RSF1Q96T23 1441 aaPredicted RBP14.25□□□□□ -0.13
CDH13-202ENST00000428848 PPARGC1BQ86YN6 1023 aaKnown RBP14.24□□□□□ -0.13
CDH13-202ENST00000428848 MYT1Q01538 1121 aa14.23□□□□□ -0.13
CDH13-202ENST00000428848 TRIM26Q12899 539 aaPredicted RBP14.2□□□□□ -0.14
CDH13-202ENST00000428848 UNC13AQ9UPW8 1703 aa14.15□□□□□ -0.14
CDH13-202ENST00000428848 BICRAQ9NZM4 1560 aa14.09□□□□□ -0.15
CDH13-202ENST00000428848 CECR2Q9BXF3 1484 aa14.04□□□□□ -0.16
CDH13-202ENST00000428848 TRIM41Q8WV44 630 aa14.03□□□□□ -0.16
CDH13-202ENST00000428848 BAZ1AQ9NRL2 1556 aaPredicted RBP14.02□□□□□ -0.16
CDH13-202ENST00000428848 MROH2BQ7Z745 1585 aa14.01□□□□□ -0.17
CDH13-202ENST00000428848 ZEB1P37275 1124 aaPredicted RBP13.98□□□□□ -0.17
CDH13-202ENST00000428848 WIZO95785 1651 aa13.92□□□□□ -0.18
CDH13-202ENST00000428848 SMARCA4P51532 1647 aa13.91□□□□□ -0.18
CDH13-202ENST00000428848 FAM9AQ8IZU1 332 aaPredicted RBP13.86□□□□□ -0.19
CDH13-202ENST00000428848 EIF4G1Q04637 1599 aaKnown RBP13.85□□□□□ -0.19
CDH13-202ENST00000428848 TOP2AP11388 1531 aaKnown RBP13.83□□□□□ -0.2
CDH13-202ENST00000428848 PEG3Q9GZU2 1588 aa13.78□□□□□ -0.2
CDH13-202ENST00000428848 CC2D2AQ9P2K1 1620 aa13.76□□□□□ -0.21
CDH13-202ENST00000428848 SCAF1Q9H7N4 1312 aaKnown RBP13.72□□□□□ -0.21
CDH13-202ENST00000428848 SMARCA2P51531 1590 aa13.69□□□□□ -0.22
CDH13-202ENST00000428848 EHMT2Q96KQ7 1210 aa13.66□□□□□ -0.22
CDH13-202ENST00000428848 TTBK1Q5TCY1 1321 aaPredicted RBP13.66□□□□□ -0.22
CDH13-202ENST00000428848 CCDC88BA6NC98 1476 aa13.65□□□□□ -0.22
CDH13-202ENST00000428848 WRNQ14191 1432 aaPredicted RBP eCLIP13.63□□□□□ -0.23
CDH13-202ENST00000428848 ABCC8Q09428 1581 aa13.59□□□□□ -0.23
CDH13-202ENST00000428848 ATAD2BQ9ULI0 1458 aa13.58□□□□□ -0.24
CDH13-202ENST00000428848 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.53□□□□□ -0.24
CDH13-202ENST00000428848 BAZ1BQ9UIG0 1483 aaKnown RBP13.52□□□□□ -0.24
CDH13-202ENST00000428848 TNIKQ9UKE5 1360 aa13.52□□□□□ -0.24
CDH13-202ENST00000428848 CEP162Q5TB80 1403 aa13.52□□□□□ -0.24
CDH13-202ENST00000428848 EEA1Q15075 1411 aa13.52□□□□□ -0.25
CDH13-202ENST00000428848 SOGA1O94964 1423 aa13.5□□□□□ -0.25
CDH13-202ENST00000428848 CCER1Q8TC90 406 aaPredicted RBP13.49□□□□□ -0.25
CDH13-202ENST00000428848 HMGXB3Q12766 1538 aa13.48□□□□□ -0.25
CDH13-202ENST00000428848 NCAPD3P42695 1498 aa13.44□□□□□ -0.26
CDH13-202ENST00000428848 RUSC2Q8N2Y8 1516 aa13.43□□□□□ -0.26
CDH13-202ENST00000428848 CSRNP3Q8WYN3 585 aa13.42□□□□□ -0.26
CDH13-202ENST00000428848 ACIN1Q9UKV3 1341 aaKnown RBP13.42□□□□□ -0.26
CDH13-202ENST00000428848 GOLGA3Q08378 1498 aa13.4□□□□□ -0.26
CDH13-202ENST00000428848 DIEXFQ68CQ4 756 aaKnown RBP13.37□□□□□ -0.27
CDH13-202ENST00000428848 NEUROD1Q13562 356 aa13.35□□□□□ -0.27
CDH13-202ENST00000428848 KIF21BO75037 1637 aa13.35□□□□□ -0.27
CDH13-202ENST00000428848 UBTFP17480 764 aaKnown RBP13.31□□□□□ -0.28
CDH13-202ENST00000428848 SYNJ1O43426 1573 aa13.31□□□□□ -0.28
CDH13-202ENST00000428848 CEP164Q9UPV0 1460 aa13.31□□□□□ -0.28
CDH13-202ENST00000428848 CENPBP07199 599 aaPredicted RBP13.28□□□□□ -0.28
CDH13-202ENST00000428848 ZNF316A6NFI3 1004 aaPredicted RBP13.25□□□□□ -0.29
CDH13-202ENST00000428848 TOP2BQ02880 1626 aa13.25□□□□□ -0.29
CDH13-202ENST00000428848 BIVM-ERCC5R4GMW8 1640 aa13.24□□□□□ -0.29
CDH13-202ENST00000428848 PRDM2Q13029 1718 aa13.24□□□□□ -0.29
CDH13-202ENST00000428848 GTF3C3Q9Y5Q9 886 aa13.24□□□□□ -0.29
CDH13-202ENST00000428848 CLIP1P30622 1438 aa13.23□□□□□ -0.29
CDH13-202ENST00000428848 VPS8Q8N3P4 1428 aa13.22□□□□□ -0.29
CDH13-202ENST00000428848 CFTRP13569 1480 aa13.22□□□□□ -0.29
CDH13-202ENST00000428848 RAPGEF2Q9Y4G8 1499 aa13.17□□□□□ -0.3
CDH13-202ENST00000428848 ERCC6Q03468 1493 aa13.15□□□□□ -0.3
CDH13-202ENST00000428848 NESP48681 1621 aa13.14□□□□□ -0.31
CDH13-202ENST00000428848 HNRNPUL2Q1KMD3 747 aaKnown RBP13.11□□□□□ -0.31
CDH13-202ENST00000428848 ERICH3Q5RHP9 1530 aa13.1□□□□□ -0.31
CDH13-202ENST00000428848 CUX1P39880 1505 aa13.1□□□□□ -0.31
CDH13-202ENST00000428848 CADPSQ9ULU8 1353 aa13.09□□□□□ -0.31
CDH13-202ENST00000428848 PRXQ9BXM0 1461 aa13.07□□□□□ -0.32
CDH13-202ENST00000428848 CUX2O14529 1486 aa13.07□□□□□ -0.32
CDH13-202ENST00000428848 DNAJC5Q9H3Z4 198 aa13.07□□□□□ -0.32
CDH13-202ENST00000428848 MIER1Q8N108 512 aa13.06□□□□□ -0.32
CDH13-202ENST00000428848 KIF27Q86VH2 1401 aa13.06□□□□□ -0.32
CDH13-202ENST00000428848 CLSPNQ9HAW4 1339 aa13.05□□□□□ -0.32
CDH13-202ENST00000428848 APLP2Q06481 763 aa13.04□□□□□ -0.32
CDH13-202ENST00000428848 ARAP1Q96P48 1450 aa13.04□□□□□ -0.32
CDH13-202ENST00000428848 DHX57Q6P158 1386 aaKnown RBP13□□□□□ -0.33
CDH13-202ENST00000428848 LAMC3Q9Y6N6 1575 aa12.99□□□□□ -0.33
CDH13-202ENST00000428848 RRBP1Q9P2E9 1410 aaKnown RBP12.98□□□□□ -0.33
CDH13-202ENST00000428848 YTHDC1Q96MU7 727 aaKnown RBP12.97□□□□□ -0.33
CDH13-202ENST00000428848 PDS5BQ9NTI5 1447 aa12.95□□□□□ -0.34
CDH13-202ENST00000428848 FANCD2Q9BXW9 1451 aa12.94□□□□□ -0.34
CDH13-202ENST00000428848 KANK4Q5T7N3 995 aaPredicted RBP12.93□□□□□ -0.34
CDH13-202ENST00000428848 THOC2Q8NI27 1593 aaKnown RBP12.92□□□□□ -0.34
CDH13-202ENST00000428848 DNMBPQ6XZF7 1577 aa12.92□□□□□ -0.34
CDH13-202ENST00000428848 KIF21AQ7Z4S6 1674 aa12.91□□□□□ -0.34
CDH13-202ENST00000428848 RANGAP1P46060 587 aaPredicted RBP12.91□□□□□ -0.34
CDH13-202ENST00000428848 FGD5Q6ZNL6 1462 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms