RNA–Protein interactions for RNA: ENST00000420720.5

RFX3-205, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 492 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-205ENST00000420720 AEBP2Q6ZN18 517 aaPredicted RBP22.19■■□□□ 1.14
RFX3-205ENST00000420720 CHIC1Q5VXU3 224 aa20.96■□□□□ 0.95
RFX3-205ENST00000420720 SENP3Q9H4L4 574 aaPredicted RBP18.77■□□□□ 0.6
RFX3-205ENST00000420720 PHF23Q9BUL5 403 aaPredicted RBP18.55■□□□□ 0.56
RFX3-205ENST00000420720 NISCHQ9Y2I1 1504 aa17.77■□□□□ 0.43
RFX3-205ENST00000420720 FOXD1Q16676 465 aa17.59■□□□□ 0.41
RFX3-205ENST00000420720 ABCC9O60706 1549 aa17.02■□□□□ 0.32
RFX3-205ENST00000420720 DNAJC5BQ9UF47 199 aa16.87■□□□□ 0.29
RFX3-205ENST00000420720 PLPPR3Q6T4P5 718 aa16.66■□□□□ 0.26
RFX3-205ENST00000420720 PPP6R1Q9UPN7 881 aa16.47■□□□□ 0.23
RFX3-205ENST00000420720 PIAS4Q8N2W9 510 aaPredicted RBP16.38■□□□□ 0.21
RFX3-205ENST00000420720 ADRA2BP18089 450 aa16.37■□□□□ 0.21
RFX3-205ENST00000420720 MSH5O43196 834 aa16.35■□□□□ 0.21
RFX3-205ENST00000420720 POTEDQ86YR6 584 aa16.27■□□□□ 0.2
RFX3-205ENST00000420720 CCDC180Q9P1Z9 1646 aa16.08■□□□□ 0.17
RFX3-205ENST00000420720 DNAJC5Q9H3Z4 198 aa16.08■□□□□ 0.16
RFX3-205ENST00000420720 RB1CC1Q8TDY2 1594 aa15.74■□□□□ 0.11
RFX3-205ENST00000420720 PABPN1Q86U42 306 aaKnown RBP eCLIP15.69■□□□□ 0.1
RFX3-205ENST00000420720 UNC13AQ9UPW8 1703 aa15.46■□□□□ 0.07
RFX3-205ENST00000420720 BICRAQ9NZM4 1560 aa15.42■□□□□ 0.06
RFX3-205ENST00000420720 CECR2Q9BXF3 1484 aa15.41■□□□□ 0.06
RFX3-205ENST00000420720 NACADO15069 1562 aa15.41■□□□□ 0.06
RFX3-205ENST00000420720 CC2D2AQ9P2K1 1620 aa15.33■□□□□ 0.04
RFX3-205ENST00000420720 DCAF8L2P0C7V8 631 aa15.16■□□□□ 0.02
RFX3-205ENST00000420720 EIF4G1Q04637 1599 aaKnown RBP15.07■□□□□ 0
RFX3-205ENST00000420720 MAPK8IP2Q13387 824 aaPredicted RBP15.06■□□□□ 0
RFX3-205ENST00000420720 CUX2O14529 1486 aa15.01□□□□□ -0.01
RFX3-205ENST00000420720 SHROOM4Q9ULL8 1493 aa15.01□□□□□ -0.01
RFX3-205ENST00000420720 TRIM41Q8WV44 630 aa14.96□□□□□ -0.01
RFX3-205ENST00000420720 DMRT2Q9Y5R5 561 aa14.93□□□□□ -0.02
RFX3-205ENST00000420720 MYO15BQ96JP2 1530 aa14.9□□□□□ -0.02
RFX3-205ENST00000420720 SCAF1Q9H7N4 1312 aaKnown RBP14.78□□□□□ -0.04
RFX3-205ENST00000420720 ZCCHC6Q5VYS8 1495 aaKnown RBP14.7□□□□□ -0.06
RFX3-205ENST00000420720 ERCC6Q03468 1493 aa14.69□□□□□ -0.06
RFX3-205ENST00000420720 PPP4R3CPQ6ZMV5 832 aa14.64□□□□□ -0.07
RFX3-205ENST00000420720 SCRIBQ14160 1630 aa14.63□□□□□ -0.07
RFX3-205ENST00000420720 DCAF1Q9Y4B6 1507 aa14.63□□□□□ -0.07
RFX3-205ENST00000420720 THOC2Q8NI27 1593 aaKnown RBP14.43□□□□□ -0.1
RFX3-205ENST00000420720 NESP48681 1621 aa14.4□□□□□ -0.1
RFX3-205ENST00000420720 HOXD11P31277 338 aaPredicted RBP14.38□□□□□ -0.11
RFX3-205ENST00000420720 CNKSR2Q8WXI2 1034 aa14.33□□□□□ -0.12
RFX3-205ENST00000420720 NCAPD3P42695 1498 aa14.26□□□□□ -0.13
RFX3-205ENST00000420720 SMARCA2P51531 1590 aa14.23□□□□□ -0.13
RFX3-205ENST00000420720 DCAF8L1A6NGE4 600 aa14.23□□□□□ -0.13
RFX3-205ENST00000420720 RNF216Q9NWF9 866 aaPredicted RBP14.22□□□□□ -0.13
RFX3-205ENST00000420720 BAZ1AQ9NRL2 1556 aaPredicted RBP14.2□□□□□ -0.14
RFX3-205ENST00000420720 KIF21AQ7Z4S6 1674 aa14.15□□□□□ -0.14
RFX3-205ENST00000420720 RIMBP3CA6NJZ7 1639 aa14.15□□□□□ -0.14
RFX3-205ENST00000420720 RIMBP3BA6NNM3 1639 aa14.15□□□□□ -0.14
RFX3-205ENST00000420720 RIMBP3Q9UFD9 1639 aa14.15□□□□□ -0.14
RFX3-205ENST00000420720 OSCARQ8IYS5 282 aa14.12□□□□□ -0.15
RFX3-205ENST00000420720 ATAD2BQ9ULI0 1458 aa14.11□□□□□ -0.15
RFX3-205ENST00000420720 HMGXB3Q12766 1538 aa14.07□□□□□ -0.16
RFX3-205ENST00000420720 LAMC3Q9Y6N6 1575 aa14.07□□□□□ -0.16
RFX3-205ENST00000420720 CACNB1Q02641 598 aaPredicted RBP14.04□□□□□ -0.16
RFX3-205ENST00000420720 RNF39Q9H2S5 420 aa14.04□□□□□ -0.16
RFX3-205ENST00000420720 WDR62O43379 1518 aa14□□□□□ -0.17
RFX3-205ENST00000420720 TRHP20396 242 aaPredicted RBP13.99□□□□□ -0.17
RFX3-205ENST00000420720 ARHGEF11O15085 1522 aa13.99□□□□□ -0.17
RFX3-205ENST00000420720 PDS5BQ9NTI5 1447 aa13.98□□□□□ -0.17
RFX3-205ENST00000420720 MRC2Q9UBG0 1479 aa13.97□□□□□ -0.17
RFX3-205ENST00000420720 NCBP3Q53F19 620 aaKnown RBP13.95□□□□□ -0.18
RFX3-205ENST00000420720 ILDR1Q86SU0 546 aaPredicted RBP13.92□□□□□ -0.18
RFX3-205ENST00000420720 NPM3O75607 178 aaKnown RBP13.91□□□□□ -0.18
RFX3-205ENST00000420720 CYB5RLQ6IPT4 315 aa13.88□□□□□ -0.19
RFX3-205ENST00000420720 BAZ1BQ9UIG0 1483 aaKnown RBP13.87□□□□□ -0.19
RFX3-205ENST00000420720 SMARCA4P51532 1647 aa13.86□□□□□ -0.19
RFX3-205ENST00000420720 ARAP1Q96P48 1450 aa13.81□□□□□ -0.2
RFX3-205ENST00000420720 CADPSQ9ULU8 1353 aa13.77□□□□□ -0.21
RFX3-205ENST00000420720 C1QBPQ07021 282 aaKnown RBP13.74□□□□□ -0.21
RFX3-205ENST00000420720 PEG3Q9GZU2 1588 aa13.73□□□□□ -0.21
RFX3-205ENST00000420720 MROH2BQ7Z745 1585 aa13.71□□□□□ -0.21
RFX3-205ENST00000420720 CEP164Q9UPV0 1460 aa13.71□□□□□ -0.21
RFX3-205ENST00000420720 KCNA4P22459 653 aa13.65□□□□□ -0.22
RFX3-205ENST00000420720 FANCD2Q9BXW9 1451 aa13.63□□□□□ -0.23
RFX3-205ENST00000420720 URB2Q14146 1524 aaKnown RBP13.63□□□□□ -0.23
RFX3-205ENST00000420720 ZNF608Q9ULD9 1512 aaPredicted RBP13.62□□□□□ -0.23
RFX3-205ENST00000420720 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.6□□□□□ -0.237e-6■□□□□ 10.8
RFX3-205ENST00000420720 RSF1Q96T23 1441 aaPredicted RBP13.56□□□□□ -0.24
RFX3-205ENST00000420720 CHD1O14646 1710 aa13.54□□□□□ -0.24
RFX3-205ENST00000420720 WIZO95785 1651 aa13.5□□□□□ -0.25
RFX3-205ENST00000420720 EIF4G3O43432 1585 aaKnown RBP13.47□□□□□ -0.25
RFX3-205ENST00000420720 IFT140Q96RY7 1462 aa13.47□□□□□ -0.25
RFX3-205ENST00000420720 U3KPZ7 1027 aaPredicted RBP13.45□□□□□ -0.26
RFX3-205ENST00000420720 CFTRP13569 1480 aa13.44□□□□□ -0.26
RFX3-205ENST00000420720 KDM4FA0A1W2PPD8 638 aa13.4□□□□□ -0.26
RFX3-205ENST00000420720 CLASP1Q7Z460 1538 aa13.39□□□□□ -0.27
RFX3-205ENST00000420720 FBLN2P98095 1184 aa13.35□□□□□ -0.27
RFX3-205ENST00000420720 AQRO60306 1485 aaKnown RBP eCLIP13.35□□□□□ -0.27
RFX3-205ENST00000420720 TOP2AP11388 1531 aaKnown RBP13.34□□□□□ -0.27
RFX3-205ENST00000420720 SLC4A2P04920 1241 aa13.33□□□□□ -0.28
RFX3-205ENST00000420720 TOPBP1Q92547 1522 aa13.29□□□□□ -0.28
RFX3-205ENST00000420720 GAPVD1Q14C86 1478 aa13.28□□□□□ -0.28
RFX3-205ENST00000420720 TARBP1Q13395 1621 aaKnown RBP13.26□□□□□ -0.29
RFX3-205ENST00000420720 SPINK5Q9NQ38 1064 aaPredicted RBP13.26□□□□□ -0.29
RFX3-205ENST00000420720 KIF13AQ9H1H9 1805 aa13.25□□□□□ -0.29
RFX3-205ENST00000420720 CCDC88BA6NC98 1476 aa13.23□□□□□ -0.29
RFX3-205ENST00000420720 SYNJ1O43426 1573 aa13.21□□□□□ -0.29
RFX3-205ENST00000420720 ERCC6L2Q5T890 1561 aa13.21□□□□□ -0.29
RFX3-205ENST00000420720 PRDM2Q13029 1718 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms