RNA–Protein interactions for RNA: ENST00000417946.5

CPS1-202, Transcript of carbamoyl-phosphate synthase 1, humanhuman

TSL 3

Gene CPS1, Length 699 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPS1-202ENST00000417946 AEBP2Q6ZN18 517 aaPredicted RBP19.97■□□□□ 0.79
CPS1-202ENST00000417946 CHIC1Q5VXU3 224 aa19.11■□□□□ 0.65
CPS1-202ENST00000417946 SENP3Q9H4L4 574 aaPredicted RBP17.28■□□□□ 0.36
CPS1-202ENST00000417946 PHF23Q9BUL5 403 aaPredicted RBP16.96■□□□□ 0.31
CPS1-202ENST00000417946 NISCHQ9Y2I1 1504 aa16.17■□□□□ 0.18
CPS1-202ENST00000417946 FOXD1Q16676 465 aa15.95■□□□□ 0.14
CPS1-202ENST00000417946 PLPPR3Q6T4P5 718 aa15.37■□□□□ 0.05
CPS1-202ENST00000417946 MSH5O43196 834 aa15.12■□□□□ 0.01
CPS1-202ENST00000417946 PIAS4Q8N2W9 510 aaPredicted RBP15.01□□□□□ -0.01
CPS1-202ENST00000417946 ADRA2BP18089 450 aa14.85□□□□□ -0.03
CPS1-202ENST00000417946 PPP6R1Q9UPN7 881 aa14.84□□□□□ -0.03
CPS1-202ENST00000417946 POTEDQ86YR6 584 aa14.59□□□□□ -0.07
CPS1-202ENST00000417946 CCDC180Q9P1Z9 1646 aa14.23□□□□□ -0.13
CPS1-202ENST00000417946 SCAF1Q9H7N4 1312 aaKnown RBP13.87□□□□□ -0.19
CPS1-202ENST00000417946 DMRT2Q9Y5R5 561 aa13.62□□□□□ -0.23
CPS1-202ENST00000417946 MAPK8IP2Q13387 824 aaPredicted RBP13.6□□□□□ -0.23
CPS1-202ENST00000417946 ZCCHC6Q5VYS8 1495 aaKnown RBP13.58□□□□□ -0.24
CPS1-202ENST00000417946 ABCC9O60706 1549 aa13.5□□□□□ -0.25
CPS1-202ENST00000417946 DCAF1Q9Y4B6 1507 aa13.4□□□□□ -0.26
CPS1-202ENST00000417946 PPP4R3CPQ6ZMV5 832 aa13.4□□□□□ -0.26
CPS1-202ENST00000417946 MYO15BQ96JP2 1530 aa13.3□□□□□ -0.28
CPS1-202ENST00000417946 NACADO15069 1562 aa13.23□□□□□ -0.29
CPS1-202ENST00000417946 CNKSR2Q8WXI2 1034 aa13.21□□□□□ -0.29
CPS1-202ENST00000417946 DCAF8L1A6NGE4 600 aa13.17□□□□□ -0.3
CPS1-202ENST00000417946 DCAF8L2P0C7V8 631 aa13.15□□□□□ -0.3
CPS1-202ENST00000417946 RB1CC1Q8TDY2 1594 aa13.14□□□□□ -0.31
CPS1-202ENST00000417946 HOXD11P31277 338 aaPredicted RBP13.11□□□□□ -0.31
CPS1-202ENST00000417946 RNF216Q9NWF9 866 aaPredicted RBP13.07□□□□□ -0.32
CPS1-202ENST00000417946 NCBP3Q53F19 620 aaKnown RBP13.05□□□□□ -0.32
CPS1-202ENST00000417946 SCRIBQ14160 1630 aa13□□□□□ -0.33
CPS1-202ENST00000417946 UNC13AQ9UPW8 1703 aa12.99□□□□□ -0.33
CPS1-202ENST00000417946 CACNB1Q02641 598 aaPredicted RBP12.95□□□□□ -0.34
CPS1-202ENST00000417946 SHROOM4Q9ULL8 1493 aa12.95□□□□□ -0.34
CPS1-202ENST00000417946 BICRAQ9NZM4 1560 aa12.85□□□□□ -0.35
CPS1-202ENST00000417946 RNF39Q9H2S5 420 aa12.78□□□□□ -0.36
CPS1-202ENST00000417946 DNAJC5BQ9UF47 199 aa12.76□□□□□ -0.37
CPS1-202ENST00000417946 C1QBPQ07021 282 aaKnown RBP12.7□□□□□ -0.38
CPS1-202ENST00000417946 NPM3O75607 178 aaKnown RBP12.65□□□□□ -0.38
CPS1-202ENST00000417946 PABPN1Q86U42 306 aaKnown RBP eCLIP12.64□□□□□ -0.39
CPS1-202ENST00000417946 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.61□□□□□ -0.39
CPS1-202ENST00000417946 CECR2Q9BXF3 1484 aa12.58□□□□□ -0.4
CPS1-202ENST00000417946 MROH2BQ7Z745 1585 aa12.5□□□□□ -0.41
CPS1-202ENST00000417946 SMARCA4P51532 1647 aa12.48□□□□□ -0.41
CPS1-202ENST00000417946 BAZ1AQ9NRL2 1556 aaPredicted RBP12.47□□□□□ -0.41
CPS1-202ENST00000417946 RSF1Q96T23 1441 aaPredicted RBP12.46□□□□□ -0.41
CPS1-202ENST00000417946 EIF4G1Q04637 1599 aaKnown RBP12.41□□□□□ -0.42
CPS1-202ENST00000417946 WIZO95785 1651 aa12.38□□□□□ -0.43
CPS1-202ENST00000417946 KCNA4P22459 653 aa12.37□□□□□ -0.43
CPS1-202ENST00000417946 PEG3Q9GZU2 1588 aa12.37□□□□□ -0.43
CPS1-202ENST00000417946 SUPT5HO00267 1087 aaKnown RBP12.31□□□□□ -0.44
CPS1-202ENST00000417946 ATAD2BQ9ULI0 1458 aa12.29□□□□□ -0.44
CPS1-202ENST00000417946 CC2D2AQ9P2K1 1620 aa12.26□□□□□ -0.45
CPS1-202ENST00000417946 TOP2AP11388 1531 aaKnown RBP12.26□□□□□ -0.45
CPS1-202ENST00000417946 SMARCA2P51531 1590 aa12.26□□□□□ -0.45
CPS1-202ENST00000417946 HMGXB3Q12766 1538 aa12.21□□□□□ -0.45
CPS1-202ENST00000417946 NCAPD3P42695 1498 aa12.21□□□□□ -0.45
CPS1-202ENST00000417946 U3KPZ7 1027 aaPredicted RBP12.19□□□□□ -0.46
CPS1-202ENST00000417946 BAZ1BQ9UIG0 1483 aaKnown RBP12.17□□□□□ -0.46
CPS1-202ENST00000417946 APLP2Q06481 763 aa12.17□□□□□ -0.46
CPS1-202ENST00000417946 CAPN15O75808 1086 aa12.12□□□□□ -0.47
CPS1-202ENST00000417946 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.11□□□□□ -0.47
CPS1-202ENST00000417946 HNRNPUL2Q1KMD3 747 aaKnown RBP12.11□□□□□ -0.47
CPS1-202ENST00000417946 CCDC88BA6NC98 1476 aa12.08□□□□□ -0.47
CPS1-202ENST00000417946 SLC4A2P04920 1241 aa12.01□□□□□ -0.49
CPS1-202ENST00000417946 SPINK5Q9NQ38 1064 aaPredicted RBP12□□□□□ -0.49
CPS1-202ENST00000417946 SAMD1Q6SPF0 538 aaPredicted RBP11.97□□□□□ -0.49
CPS1-202ENST00000417946 ZNF219Q9P2Y4 722 aaPredicted RBP11.97□□□□□ -0.49
CPS1-202ENST00000417946 DSG3P32926 999 aa11.95□□□□□ -0.5
CPS1-202ENST00000417946 TRHP20396 242 aaPredicted RBP11.91□□□□□ -0.5
CPS1-202ENST00000417946 PRDM2Q13029 1718 aa11.9□□□□□ -0.5
CPS1-202ENST00000417946 CFTRP13569 1480 aa11.89□□□□□ -0.51
CPS1-202ENST00000417946 NESP48681 1621 aa11.85□□□□□ -0.51
CPS1-202ENST00000417946 CADPSQ9ULU8 1353 aa11.84□□□□□ -0.51
CPS1-202ENST00000417946 MYCNP04198 464 aaPredicted RBP11.82□□□□□ -0.52
CPS1-202ENST00000417946 LAMC3Q9Y6N6 1575 aa11.82□□□□□ -0.52
CPS1-202ENST00000417946 ABCC8Q09428 1581 aa11.79□□□□□ -0.52
CPS1-202ENST00000417946 SLC4A1APQ9BWU0 796 aaKnown RBP11.79□□□□□ -0.52
CPS1-202ENST00000417946 ABCB7O75027 752 aa11.76□□□□□ -0.53
CPS1-202ENST00000417946 SYNJ1O43426 1573 aa11.74□□□□□ -0.53
CPS1-202ENST00000417946 KIF21AQ7Z4S6 1674 aa11.74□□□□□ -0.53
CPS1-202ENST00000417946 FANCD2Q9BXW9 1451 aa11.73□□□□□ -0.53
CPS1-202ENST00000417946 CUX1P39880 1505 aa11.7□□□□□ -0.54
CPS1-202ENST00000417946 BIVM-ERCC5R4GMW8 1640 aa11.7□□□□□ -0.54
CPS1-202ENST00000417946 WRNQ14191 1432 aaPredicted RBP eCLIP11.69□□□□□ -0.54
CPS1-202ENST00000417946 TOP2BQ02880 1626 aa11.68□□□□□ -0.54
CPS1-202ENST00000417946 CEP164Q9UPV0 1460 aa11.66□□□□□ -0.54
CPS1-202ENST00000417946 FOXD4L1Q9NU39 408 aa11.66□□□□□ -0.54
CPS1-202ENST00000417946 PDS5BQ9NTI5 1447 aa11.66□□□□□ -0.54
CPS1-202ENST00000417946 URB2Q14146 1524 aaKnown RBP11.65□□□□□ -0.55
CPS1-202ENST00000417946 DNMBPQ6XZF7 1577 aa11.63□□□□□ -0.55
CPS1-202ENST00000417946 THOC2Q8NI27 1593 aaKnown RBP11.62□□□□□ -0.55
CPS1-202ENST00000417946 TOPBP1Q92547 1522 aa11.61□□□□□ -0.55
CPS1-202ENST00000417946 RBM42Q9BTD8 480 aaKnown RBP11.6□□□□□ -0.55
CPS1-202ENST00000417946 MRC2Q9UBG0 1479 aa11.58□□□□□ -0.56
CPS1-202ENST00000417946 WDR62O43379 1518 aa11.58□□□□□ -0.56
CPS1-202ENST00000417946 TRIM41Q8WV44 630 aa11.57□□□□□ -0.56
CPS1-202ENST00000417946 FGD5Q6ZNL6 1462 aa11.57□□□□□ -0.56
CPS1-202ENST00000417946 POLA2Q14181 598 aa11.56□□□□□ -0.56
CPS1-202ENST00000417946 POLA1P09884 1462 aaPredicted RBP11.54□□□□□ -0.56
CPS1-202ENST00000417946 WDR97A6NE52 1622 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms