RNA–Protein interactions for RNA: ENST00000417440.2

CASP4-202, Transcript of caspase 4, humanhuman

TSL 3

Gene CASP4, Length 763 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASP4-202ENST00000417440 AEBP2Q6ZN18 517 aaPredicted RBP19.91■□□□□ 0.78
CASP4-202ENST00000417440 CHIC1Q5VXU3 224 aa19.69■□□□□ 0.74
CASP4-202ENST00000417440 NISCHQ9Y2I1 1504 aa18.06■□□□□ 0.48
CASP4-202ENST00000417440 PHF23Q9BUL5 403 aaPredicted RBP17.34■□□□□ 0.37
CASP4-202ENST00000417440 SENP3Q9H4L4 574 aaPredicted RBP16.88■□□□□ 0.29
CASP4-202ENST00000417440 ABCC9O60706 1549 aa16.45■□□□□ 0.22
CASP4-202ENST00000417440 CCDC180Q9P1Z9 1646 aa16.14■□□□□ 0.17
CASP4-202ENST00000417440 PLPPR3Q6T4P5 718 aa16.09■□□□□ 0.17
CASP4-202ENST00000417440 FOXD1Q16676 465 aa15.62■□□□□ 0.09
CASP4-202ENST00000417440 DNAJC5BQ9UF47 199 aa15.56■□□□□ 0.08
CASP4-202ENST00000417440 DCAF8L2P0C7V8 631 aa15.53■□□□□ 0.08
CASP4-202ENST00000417440 RB1CC1Q8TDY2 1594 aa15.5■□□□□ 0.07
CASP4-202ENST00000417440 PABPN1Q86U42 306 aaKnown RBP eCLIP15.38■□□□□ 0.05
CASP4-202ENST00000417440 NACADO15069 1562 aa15.35■□□□□ 0.05
CASP4-202ENST00000417440 PPP6R1Q9UPN7 881 aa15.2■□□□□ 0.02
CASP4-202ENST00000417440 ADRA2BP18089 450 aa15.19■□□□□ 0.02
CASP4-202ENST00000417440 UNC13AQ9UPW8 1703 aa15.08■□□□□ 0
CASP4-202ENST00000417440 MYO15BQ96JP2 1530 aa15.05■□□□□ -0
CASP4-202ENST00000417440 BICRAQ9NZM4 1560 aa15.04■□□□□ -0
CASP4-202ENST00000417440 ZCCHC6Q5VYS8 1495 aaKnown RBP14.92□□□□□ -0.02
CASP4-202ENST00000417440 SCRIBQ14160 1630 aa14.84□□□□□ -0.03
CASP4-202ENST00000417440 DCAF1Q9Y4B6 1507 aa14.83□□□□□ -0.04
CASP4-202ENST00000417440 CECR2Q9BXF3 1484 aa14.8□□□□□ -0.04
CASP4-202ENST00000417440 CC2D2AQ9P2K1 1620 aa14.77□□□□□ -0.04
CASP4-202ENST00000417440 SHROOM4Q9ULL8 1493 aa14.76□□□□□ -0.05
CASP4-202ENST00000417440 PIAS4Q8N2W9 510 aaPredicted RBP14.76□□□□□ -0.05
CASP4-202ENST00000417440 EIF4G1Q04637 1599 aaKnown RBP14.71□□□□□ -0.05
CASP4-202ENST00000417440 MSH5O43196 834 aa14.34□□□□□ -0.11
CASP4-202ENST00000417440 DNAJC5Q9H3Z4 198 aa14.33□□□□□ -0.12
CASP4-202ENST00000417440 ERCC6Q03468 1493 aa14.21□□□□□ -0.13
CASP4-202ENST00000417440 NCAPD3P42695 1498 aa14.2□□□□□ -0.14
CASP4-202ENST00000417440 PPP4R3CPQ6ZMV5 832 aa14.19□□□□□ -0.14
CASP4-202ENST00000417440 ATAD2BQ9ULI0 1458 aa14.17□□□□□ -0.14
CASP4-202ENST00000417440 CUX2O14529 1486 aa14.13□□□□□ -0.15
CASP4-202ENST00000417440 KCNA4P22459 653 aa14.1□□□□□ -0.15
CASP4-202ENST00000417440 SMARCA2P51531 1590 aa14.09□□□□□ -0.15
CASP4-202ENST00000417440 NESP48681 1621 aa14.08□□□□□ -0.15
CASP4-202ENST00000417440 SMARCA4P51532 1647 aa14.08□□□□□ -0.15
CASP4-202ENST00000417440 BAZ1BQ9UIG0 1483 aaKnown RBP14.05□□□□□ -0.16
CASP4-202ENST00000417440 HMGXB3Q12766 1538 aa14.04□□□□□ -0.16
CASP4-202ENST00000417440 BAZ1AQ9NRL2 1556 aaPredicted RBP14.01□□□□□ -0.17
CASP4-202ENST00000417440 MROH2BQ7Z745 1585 aa13.95□□□□□ -0.18
CASP4-202ENST00000417440 SCAF1Q9H7N4 1312 aaKnown RBP13.94□□□□□ -0.18
CASP4-202ENST00000417440 NCBP3Q53F19 620 aaKnown RBP13.91□□□□□ -0.18
CASP4-202ENST00000417440 PEG3Q9GZU2 1588 aa13.89□□□□□ -0.19
CASP4-202ENST00000417440 LAMC3Q9Y6N6 1575 aa13.88□□□□□ -0.19
CASP4-202ENST00000417440 PDS5BQ9NTI5 1447 aa13.87□□□□□ -0.19
CASP4-202ENST00000417440 THOC2Q8NI27 1593 aaKnown RBP13.86□□□□□ -0.19
CASP4-202ENST00000417440 CADPSQ9ULU8 1353 aa13.82□□□□□ -0.2
CASP4-202ENST00000417440 KIF21AQ7Z4S6 1674 aa13.8□□□□□ -0.2
CASP4-202ENST00000417440 TRIM41Q8WV44 630 aa13.77□□□□□ -0.21
CASP4-202ENST00000417440 CNKSR2Q8WXI2 1034 aa13.76□□□□□ -0.21
CASP4-202ENST00000417440 WIZO95785 1651 aa13.75□□□□□ -0.21
CASP4-202ENST00000417440 MRC2Q9UBG0 1479 aa13.74□□□□□ -0.21
CASP4-202ENST00000417440 MAPK8IP2Q13387 824 aaPredicted RBP13.71□□□□□ -0.21
CASP4-202ENST00000417440 NPM3O75607 178 aaKnown RBP13.68□□□□□ -0.22
CASP4-202ENST00000417440 CEP164Q9UPV0 1460 aa13.67□□□□□ -0.22
CASP4-202ENST00000417440 WDR62O43379 1518 aa13.66□□□□□ -0.22
CASP4-202ENST00000417440 FANCD2Q9BXW9 1451 aa13.66□□□□□ -0.22
CASP4-202ENST00000417440 POTEDQ86YR6 584 aa13.63□□□□□ -0.23
CASP4-202ENST00000417440 RSF1Q96T23 1441 aaPredicted RBP13.63□□□□□ -0.23
CASP4-202ENST00000417440 CFTRP13569 1480 aa13.6□□□□□ -0.23
CASP4-202ENST00000417440 OSCARQ8IYS5 282 aa13.58□□□□□ -0.24
CASP4-202ENST00000417440 TOP2AP11388 1531 aaKnown RBP13.55□□□□□ -0.24
CASP4-202ENST00000417440 URB2Q14146 1524 aaKnown RBP13.54□□□□□ -0.24
CASP4-202ENST00000417440 DMRT2Q9Y5R5 561 aa13.52□□□□□ -0.25
CASP4-202ENST00000417440 SLC4A1APQ9BWU0 796 aaKnown RBP13.47□□□□□ -0.25
CASP4-202ENST00000417440 CCDC88BA6NC98 1476 aa13.46□□□□□ -0.25
CASP4-202ENST00000417440 RNF216Q9NWF9 866 aaPredicted RBP13.45□□□□□ -0.26
CASP4-202ENST00000417440 ZNF608Q9ULD9 1512 aaPredicted RBP13.42□□□□□ -0.26
CASP4-202ENST00000417440 IFT140Q96RY7 1462 aa13.4□□□□□ -0.26
CASP4-202ENST00000417440 TOPBP1Q92547 1522 aa13.37□□□□□ -0.27
CASP4-202ENST00000417440 HOXD11P31277 338 aaPredicted RBP13.35□□□□□ -0.27
CASP4-202ENST00000417440 FBLN2P98095 1184 aa13.34□□□□□ -0.27
CASP4-202ENST00000417440 RIMBP3CA6NJZ7 1639 aa13.32□□□□□ -0.28
CASP4-202ENST00000417440 RIMBP3BA6NNM3 1639 aa13.32□□□□□ -0.28
CASP4-202ENST00000417440 RIMBP3Q9UFD9 1639 aa13.32□□□□□ -0.28
CASP4-202ENST00000417440 AQRO60306 1485 aaKnown RBP eCLIP13.31□□□□□ -0.28
CASP4-202ENST00000417440 PRDM2Q13029 1718 aa13.31□□□□□ -0.28
CASP4-202ENST00000417440 CYB5RLQ6IPT4 315 aa13.31□□□□□ -0.28
CASP4-202ENST00000417440 ABCC8Q09428 1581 aa13.3□□□□□ -0.28
CASP4-202ENST00000417440 EHMT2Q96KQ7 1210 aa13.29□□□□□ -0.28
CASP4-202ENST00000417440 ARHGEF11O15085 1522 aa13.28□□□□□ -0.28
CASP4-202ENST00000417440 DNMBPQ6XZF7 1577 aa13.28□□□□□ -0.28
CASP4-202ENST00000417440 EIF4G3O43432 1585 aaKnown RBP13.27□□□□□ -0.29
CASP4-202ENST00000417440 TDRD9Q8NDG6 1382 aaKnown RBP13.24□□□□□ -0.29
CASP4-202ENST00000417440 TRHP20396 242 aaPredicted RBP13.24□□□□□ -0.29
CASP4-202ENST00000417440 RAD54L2Q9Y4B4 1467 aa13.23□□□□□ -0.29
CASP4-202ENST00000417440 POLA1P09884 1462 aaPredicted RBP13.23□□□□□ -0.29
CASP4-202ENST00000417440 SOGA1O94964 1423 aa13.22□□□□□ -0.29
CASP4-202ENST00000417440 TARBP1Q13395 1621 aaKnown RBP13.21□□□□□ -0.3
CASP4-202ENST00000417440 CHMP7Q8WUX9 453 aaPredicted RBP13.18□□□□□ -0.3
CASP4-202ENST00000417440 CHD1O14646 1710 aa13.17□□□□□ -0.3
CASP4-202ENST00000417440 ARAP1Q96P48 1450 aa13.16□□□□□ -0.3
CASP4-202ENST00000417440 SNAPC4Q5SXM2 1469 aa13.15□□□□□ -0.3
CASP4-202ENST00000417440 FGD5Q6ZNL6 1462 aa13.14□□□□□ -0.31
CASP4-202ENST00000417440 CSRNP3Q8WYN3 585 aa13.11□□□□□ -0.31
CASP4-202ENST00000417440 SUPT5HO00267 1087 aaKnown RBP13.1□□□□□ -0.31
CASP4-202ENST00000417440 CUX1P39880 1505 aa13.09□□□□□ -0.31
CASP4-202ENST00000417440 GRIN2BQ13224 1484 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms