RNA–Protein interactions for RNA: ENST00000413553.1

SIK3-202, Transcript of SIK family kinase 3, humanhuman

TSL 5

Gene SIK3, Length 3,054 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIK3-202ENST00000413553 NISCHQ9Y2I1 1504 aa18.28■□□□□ 0.52
SIK3-202ENST00000413553 CCDC180Q9P1Z9 1646 aa15.82■□□□□ 0.12
SIK3-202ENST00000413553 DCAF8L2P0C7V8 631 aa15.47■□□□□ 0.07
SIK3-202ENST00000413553 ZCCHC6Q5VYS8 1495 aaKnown RBP15.32■□□□□ 0.04
SIK3-202ENST00000413553 SHROOM4Q9ULL8 1493 aa15.18■□□□□ 0.02
SIK3-202ENST00000413553 ABCC9O60706 1549 aa15.18■□□□□ 0.02
SIK3-202ENST00000413553 SUPT5HO00267 1087 aaKnown RBP15.02■□□□□ -0
SIK3-202ENST00000413553 DCAF1Q9Y4B6 1507 aa15.01□□□□□ -0.01
SIK3-202ENST00000413553 HRCP23327 699 aa14.93□□□□□ -0.02
SIK3-202ENST00000413553 MYO15BQ96JP2 1530 aa14.81□□□□□ -0.04
SIK3-202ENST00000413553 NACADO15069 1562 aa14.8□□□□□ -0.04
SIK3-202ENST00000413553 PCGF6Q9BYE7 350 aa14.74□□□□□ -0.05
SIK3-202ENST00000413553 SCRIBQ14160 1630 aa14.72□□□□□ -0.05
SIK3-202ENST00000413553 RB1CC1Q8TDY2 1594 aa14.71□□□□□ -0.06
SIK3-202ENST00000413553 CHIC1Q5VXU3 224 aa14.67□□□□□ -0.06
SIK3-202ENST00000413553 PPARGC1BQ86YN6 1023 aaKnown RBP14.65□□□□□ -0.06
SIK3-202ENST00000413553 PABPN1Q86U42 306 aaKnown RBP eCLIP14.4□□□□□ -0.1
SIK3-202ENST00000413553 LOC105371045A0A1W2PR82 267 aa14.34□□□□□ -0.11
SIK3-202ENST00000413553 UNC13AQ9UPW8 1703 aa14.33□□□□□ -0.11
SIK3-202ENST00000413553 TRIM26Q12899 539 aaPredicted RBP14.28□□□□□ -0.12
SIK3-202ENST00000413553 CECR2Q9BXF3 1484 aa14.26□□□□□ -0.13
SIK3-202ENST00000413553 RSF1Q96T23 1441 aaPredicted RBP14.23□□□□□ -0.13
SIK3-202ENST00000413553 PELP1Q8IZL8 1130 aaKnown RBP14.21□□□□□ -0.13
SIK3-202ENST00000413553 BICRAQ9NZM4 1560 aa14.2□□□□□ -0.14
SIK3-202ENST00000413553 MROH2BQ7Z745 1585 aa14.15□□□□□ -0.14
SIK3-202ENST00000413553 BAZ1AQ9NRL2 1556 aaPredicted RBP14.12□□□□□ -0.15
SIK3-202ENST00000413553 ZEB1P37275 1124 aaPredicted RBP14.12□□□□□ -0.15
SIK3-202ENST00000413553 SCAF1Q9H7N4 1312 aaKnown RBP14.05□□□□□ -0.16
SIK3-202ENST00000413553 WIZO95785 1651 aa14.04□□□□□ -0.16
SIK3-202ENST00000413553 SMARCA4P51532 1647 aa14.03□□□□□ -0.16
SIK3-202ENST00000413553 FAM9AQ8IZU1 332 aaPredicted RBP13.91□□□□□ -0.18
SIK3-202ENST00000413553 TRIM41Q8WV44 630 aa13.9□□□□□ -0.18
SIK3-202ENST00000413553 EHMT2Q96KQ7 1210 aa13.88□□□□□ -0.19
SIK3-202ENST00000413553 TOP2AP11388 1531 aaKnown RBP13.85□□□□□ -0.19
SIK3-202ENST00000413553 EIF4G1Q04637 1599 aaKnown RBP13.84□□□□□ -0.19
SIK3-202ENST00000413553 ATAD2BQ9ULI0 1458 aa13.83□□□□□ -0.2
SIK3-202ENST00000413553 SMARCA2P51531 1590 aa13.81□□□□□ -0.2
SIK3-202ENST00000413553 BAZ1BQ9UIG0 1483 aaKnown RBP13.81□□□□□ -0.2
SIK3-202ENST00000413553 PEG3Q9GZU2 1588 aa13.78□□□□□ -0.2
SIK3-202ENST00000413553 CCDC88BA6NC98 1476 aa13.77□□□□□ -0.21
SIK3-202ENST00000413553 ACIN1Q9UKV3 1341 aaKnown RBP13.76□□□□□ -0.21
SIK3-202ENST00000413553 NEUROD1Q13562 356 aa13.73□□□□□ -0.21
SIK3-202ENST00000413553 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.71□□□□□ -0.21
SIK3-202ENST00000413553 CCER1Q8TC90 406 aaPredicted RBP13.7□□□□□ -0.22
SIK3-202ENST00000413553 NCAPD3P42695 1498 aa13.68□□□□□ -0.22
SIK3-202ENST00000413553 GTF3C3Q9Y5Q9 886 aa13.67□□□□□ -0.22
SIK3-202ENST00000413553 CENPBP07199 599 aaPredicted RBP13.66□□□□□ -0.22
SIK3-202ENST00000413553 CC2D2AQ9P2K1 1620 aa13.64□□□□□ -0.23
SIK3-202ENST00000413553 DIEXFQ68CQ4 756 aaKnown RBP13.63□□□□□ -0.23
SIK3-202ENST00000413553 HMGXB3Q12766 1538 aa13.62□□□□□ -0.23
SIK3-202ENST00000413553 MYT1Q01538 1121 aa13.61□□□□□ -0.23
SIK3-202ENST00000413553 TTBK1Q5TCY1 1321 aaPredicted RBP13.53□□□□□ -0.24
SIK3-202ENST00000413553 ABCC8Q09428 1581 aa13.52□□□□□ -0.25
SIK3-202ENST00000413553 YTHDC1Q96MU7 727 aaKnown RBP13.45□□□□□ -0.26
SIK3-202ENST00000413553 WRNQ14191 1432 aaPredicted RBP eCLIP13.44□□□□□ -0.26
SIK3-202ENST00000413553 CADPSQ9ULU8 1353 aa13.41□□□□□ -0.26
SIK3-202ENST00000413553 CFTRP13569 1480 aa13.4□□□□□ -0.26
SIK3-202ENST00000413553 DNAJC5BQ9UF47 199 aa13.4□□□□□ -0.26
SIK3-202ENST00000413553 ZNF316A6NFI3 1004 aaPredicted RBP13.38□□□□□ -0.27
SIK3-202ENST00000413553 CEP162Q5TB80 1403 aa13.32□□□□□ -0.28
SIK3-202ENST00000413553 SYNJ1O43426 1573 aa13.31□□□□□ -0.28
SIK3-202ENST00000413553 NESP48681 1621 aa13.29□□□□□ -0.28
SIK3-202ENST00000413553 SOGA1O94964 1423 aa13.29□□□□□ -0.28
SIK3-202ENST00000413553 MIER1Q8N108 512 aa13.27□□□□□ -0.28
SIK3-202ENST00000413553 FANCD2Q9BXW9 1451 aa13.26□□□□□ -0.29
SIK3-202ENST00000413553 CSRNP3Q8WYN3 585 aa13.26□□□□□ -0.29
SIK3-202ENST00000413553 TOP2BQ02880 1626 aa13.23□□□□□ -0.29
SIK3-202ENST00000413553 RUSC2Q8N2Y8 1516 aa13.23□□□□□ -0.29
SIK3-202ENST00000413553 UBTFP17480 764 aaKnown RBP13.22□□□□□ -0.29
SIK3-202ENST00000413553 PRDM2Q13029 1718 aa13.22□□□□□ -0.29
SIK3-202ENST00000413553 CUX1P39880 1505 aa13.21□□□□□ -0.29
SIK3-202ENST00000413553 LAMC3Q9Y6N6 1575 aa13.21□□□□□ -0.3
SIK3-202ENST00000413553 EEA1Q15075 1411 aa13.21□□□□□ -0.3
SIK3-202ENST00000413553 TNIKQ9UKE5 1360 aa13.21□□□□□ -0.3
SIK3-202ENST00000413553 PDS5BQ9NTI5 1447 aa13.2□□□□□ -0.3
SIK3-202ENST00000413553 HNRNPUL2Q1KMD3 747 aaKnown RBP13.19□□□□□ -0.3
SIK3-202ENST00000413553 BIVM-ERCC5R4GMW8 1640 aa13.17□□□□□ -0.3
SIK3-202ENST00000413553 CEP164Q9UPV0 1460 aa13.17□□□□□ -0.3
SIK3-202ENST00000413553 FGD5Q6ZNL6 1462 aa13.11□□□□□ -0.31
SIK3-202ENST00000413553 KIF27Q86VH2 1401 aa13.11□□□□□ -0.31
SIK3-202ENST00000413553 GOLGA3Q08378 1498 aa13.1□□□□□ -0.31
SIK3-202ENST00000413553 TOPBP1Q92547 1522 aa13.08□□□□□ -0.32
SIK3-202ENST00000413553 CUX2O14529 1486 aa13.08□□□□□ -0.32
SIK3-202ENST00000413553 RANGAP1P46060 587 aaPredicted RBP13.08□□□□□ -0.32
SIK3-202ENST00000413553 DNMBPQ6XZF7 1577 aa13.07□□□□□ -0.32
SIK3-202ENST00000413553 KIF21AQ7Z4S6 1674 aa13.05□□□□□ -0.32
SIK3-202ENST00000413553 ERCC6Q03468 1493 aa13.05□□□□□ -0.32
SIK3-202ENST00000413553 URB2Q14146 1524 aaKnown RBP13.04□□□□□ -0.32
SIK3-202ENST00000413553 RAD54L2Q9Y4B4 1467 aa13.04□□□□□ -0.32
SIK3-202ENST00000413553 POLA1P09884 1462 aaPredicted RBP13.03□□□□□ -0.32
SIK3-202ENST00000413553 APLP2Q06481 763 aa13.02□□□□□ -0.32
SIK3-202ENST00000413553 SUPT16HQ9Y5B9 1047 aaKnown RBP13.02□□□□□ -0.33
SIK3-202ENST00000413553 RAPGEF2Q9Y4G8 1499 aa13.01□□□□□ -0.33
SIK3-202ENST00000413553 CLSPNQ9HAW4 1339 aa13□□□□□ -0.33
SIK3-202ENST00000413553 CLIP1P30622 1438 aa12.99□□□□□ -0.33
SIK3-202ENST00000413553 KIF21BO75037 1637 aa12.98□□□□□ -0.33
SIK3-202ENST00000413553 MRC2Q9UBG0 1479 aa12.97□□□□□ -0.33
SIK3-202ENST00000413553 IGF1RP08069 1367 aa12.96□□□□□ -0.33
SIK3-202ENST00000413553 TDRD9Q8NDG6 1382 aaKnown RBP12.96□□□□□ -0.33
SIK3-202ENST00000413553 VPS8Q8N3P4 1428 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 186.6 ms