RNA–Protein interactions for RNA: ENST00000411615.5

LINC02539-201, Transcript of long intergenic non-protein coding RNA 2539, humanhuman

TSL 2 BASIC

Gene LINC02539, Length 737 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC02539-201ENST00000411615 AEBP2Q6ZN18 517 aaPredicted RBP24.25■■□□□ 1.47
LINC02539-201ENST00000411615 CHIC1Q5VXU3 224 aa22.98■■□□□ 1.27
LINC02539-201ENST00000411615 NISCHQ9Y2I1 1504 aa20.74■□□□□ 0.91
LINC02539-201ENST00000411615 SENP3Q9H4L4 574 aaPredicted RBP20.36■□□□□ 0.85
LINC02539-201ENST00000411615 PHF23Q9BUL5 403 aaPredicted RBP20.33■□□□□ 0.85
LINC02539-201ENST00000411615 FOXD1Q16676 465 aa19.17■□□□□ 0.66
LINC02539-201ENST00000411615 PLPPR3Q6T4P5 718 aa18.35■□□□□ 0.53
LINC02539-201ENST00000411615 CCDC180Q9P1Z9 1646 aa18.34■□□□□ 0.53
LINC02539-201ENST00000411615 PPP6R1Q9UPN7 881 aa18.15■□□□□ 0.5
LINC02539-201ENST00000411615 ADRA2BP18089 450 aa18.08■□□□□ 0.48
LINC02539-201ENST00000411615 PIAS4Q8N2W9 510 aaPredicted RBP17.89■□□□□ 0.45
LINC02539-201ENST00000411615 MSH5O43196 834 aa17.62■□□□□ 0.41
LINC02539-201ENST00000411615 ABCC9O60706 1549 aa17.55■□□□□ 0.4
LINC02539-201ENST00000411615 ZCCHC6Q5VYS8 1495 aaKnown RBP17.33■□□□□ 0.37
LINC02539-201ENST00000411615 DCAF1Q9Y4B6 1507 aa17.23■□□□□ 0.35
LINC02539-201ENST00000411615 MYO15BQ96JP2 1530 aa17.22■□□□□ 0.35
LINC02539-201ENST00000411615 NACADO15069 1562 aa17.17■□□□□ 0.34
LINC02539-201ENST00000411615 POTEDQ86YR6 584 aa17.15■□□□□ 0.34
LINC02539-201ENST00000411615 DCAF8L2P0C7V8 631 aa17.12■□□□□ 0.33
LINC02539-201ENST00000411615 RB1CC1Q8TDY2 1594 aa17.09■□□□□ 0.33
LINC02539-201ENST00000411615 UNC13AQ9UPW8 1703 aa16.68■□□□□ 0.26
LINC02539-201ENST00000411615 SCRIBQ14160 1630 aa16.66■□□□□ 0.26
LINC02539-201ENST00000411615 MAPK8IP2Q13387 824 aaPredicted RBP16.61■□□□□ 0.25
LINC02539-201ENST00000411615 BICRAQ9NZM4 1560 aa16.54■□□□□ 0.24
LINC02539-201ENST00000411615 SHROOM4Q9ULL8 1493 aa16.48■□□□□ 0.23
LINC02539-201ENST00000411615 PABPN1Q86U42 306 aaKnown RBP eCLIP16.44■□□□□ 0.22
LINC02539-201ENST00000411615 DMRT2Q9Y5R5 561 aa16.23■□□□□ 0.19
LINC02539-201ENST00000411615 PPP4R3CPQ6ZMV5 832 aa16.21■□□□□ 0.19
LINC02539-201ENST00000411615 SCAF1Q9H7N4 1312 aaKnown RBP16.18■□□□□ 0.18
LINC02539-201ENST00000411615 CECR2Q9BXF3 1484 aa16.08■□□□□ 0.16
LINC02539-201ENST00000411615 EIF4G1Q04637 1599 aaKnown RBP16.08■□□□□ 0.16
LINC02539-201ENST00000411615 BAZ1AQ9NRL2 1556 aaPredicted RBP16.06■□□□□ 0.16
LINC02539-201ENST00000411615 SMARCA4P51532 1647 aa16.01■□□□□ 0.15
LINC02539-201ENST00000411615 MROH2BQ7Z745 1585 aa15.96■□□□□ 0.14
LINC02539-201ENST00000411615 CC2D2AQ9P2K1 1620 aa15.92■□□□□ 0.14
LINC02539-201ENST00000411615 RSF1Q96T23 1441 aaPredicted RBP15.91■□□□□ 0.14
LINC02539-201ENST00000411615 PEG3Q9GZU2 1588 aa15.9■□□□□ 0.14
LINC02539-201ENST00000411615 SMARCA2P51531 1590 aa15.87■□□□□ 0.13
LINC02539-201ENST00000411615 ATAD2BQ9ULI0 1458 aa15.85■□□□□ 0.13
LINC02539-201ENST00000411615 DNAJC5BQ9UF47 199 aa15.85■□□□□ 0.13
LINC02539-201ENST00000411615 NCAPD3P42695 1498 aa15.84■□□□□ 0.13
LINC02539-201ENST00000411615 WIZO95785 1651 aa15.79■□□□□ 0.12
LINC02539-201ENST00000411615 HMGXB3Q12766 1538 aa15.78■□□□□ 0.12
LINC02539-201ENST00000411615 CNKSR2Q8WXI2 1034 aa15.76■□□□□ 0.11
LINC02539-201ENST00000411615 BAZ1BQ9UIG0 1483 aaKnown RBP15.73■□□□□ 0.11
LINC02539-201ENST00000411615 HOXD11P31277 338 aaPredicted RBP15.68■□□□□ 0.1
LINC02539-201ENST00000411615 DCAF8L1A6NGE4 600 aa15.67■□□□□ 0.1
LINC02539-201ENST00000411615 TOP2AP11388 1531 aaKnown RBP15.67■□□□□ 0.1
LINC02539-201ENST00000411615 SUPT5HO00267 1087 aaKnown RBP15.65■□□□□ 0.1
LINC02539-201ENST00000411615 RNF216Q9NWF9 866 aaPredicted RBP15.58■□□□□ 0.08
LINC02539-201ENST00000411615 CCDC88BA6NC98 1476 aa15.47■□□□□ 0.07
LINC02539-201ENST00000411615 NPM3O75607 178 aaKnown RBP15.46■□□□□ 0.07
LINC02539-201ENST00000411615 NCBP3Q53F19 620 aaKnown RBP15.43■□□□□ 0.06
LINC02539-201ENST00000411615 KCNA4P22459 653 aa15.38■□□□□ 0.05
LINC02539-201ENST00000411615 CADPSQ9ULU8 1353 aa15.37■□□□□ 0.05
LINC02539-201ENST00000411615 LAMC3Q9Y6N6 1575 aa15.36■□□□□ 0.05
LINC02539-201ENST00000411615 CFTRP13569 1480 aa15.35■□□□□ 0.05
LINC02539-201ENST00000411615 NESP48681 1621 aa15.27■□□□□ 0.03
LINC02539-201ENST00000411615 PRDM2Q13029 1718 aa15.26■□□□□ 0.03
LINC02539-201ENST00000411615 PDS5BQ9NTI5 1447 aa15.25■□□□□ 0.03
LINC02539-201ENST00000411615 RNF39Q9H2S5 420 aa15.18■□□□□ 0.02
LINC02539-201ENST00000411615 FANCD2Q9BXW9 1451 aa15.16■□□□□ 0.02
LINC02539-201ENST00000411615 CACNB1Q02641 598 aaPredicted RBP15.15■□□□□ 0.02
LINC02539-201ENST00000411615 CEP164Q9UPV0 1460 aa15.12■□□□□ 0.01
LINC02539-201ENST00000411615 KIF21AQ7Z4S6 1674 aa15.12■□□□□ 0.01
LINC02539-201ENST00000411615 ERCC6Q03468 1493 aa15.11■□□□□ 0.01
LINC02539-201ENST00000411615 ABCC8Q09428 1581 aa15.06■□□□□ 0
LINC02539-201ENST00000411615 MRC2Q9UBG0 1479 aa15.04■□□□□ -0
LINC02539-201ENST00000411615 THOC2Q8NI27 1593 aaKnown RBP15.01□□□□□ -0.01
LINC02539-201ENST00000411615 WDR62O43379 1518 aa14.99□□□□□ -0.01
LINC02539-201ENST00000411615 URB2Q14146 1524 aaKnown RBP14.99□□□□□ -0.01
LINC02539-201ENST00000411615 DNMBPQ6XZF7 1577 aa14.98□□□□□ -0.01
LINC02539-201ENST00000411615 WRNQ14191 1432 aaPredicted RBP eCLIP14.98□□□□□ -0.01
LINC02539-201ENST00000411615 TOPBP1Q92547 1522 aa14.97□□□□□ -0.01
LINC02539-201ENST00000411615 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.96□□□□□ -0.01
LINC02539-201ENST00000411615 CUX1P39880 1505 aa14.95□□□□□ -0.02
LINC02539-201ENST00000411615 TOP2BQ02880 1626 aa14.93□□□□□ -0.02
LINC02539-201ENST00000411615 BIVM-ERCC5R4GMW8 1640 aa14.93□□□□□ -0.02
LINC02539-201ENST00000411615 CUX2O14529 1486 aa14.91□□□□□ -0.02
LINC02539-201ENST00000411615 SYNJ1O43426 1573 aa14.9□□□□□ -0.02
LINC02539-201ENST00000411615 POLA1P09884 1462 aaPredicted RBP14.85□□□□□ -0.03
LINC02539-201ENST00000411615 FGD5Q6ZNL6 1462 aa14.85□□□□□ -0.03
LINC02539-201ENST00000411615 C1QBPQ07021 282 aaKnown RBP14.84□□□□□ -0.03
LINC02539-201ENST00000411615 TRIM41Q8WV44 630 aa14.83□□□□□ -0.04
LINC02539-201ENST00000411615 IFT140Q96RY7 1462 aa14.82□□□□□ -0.04
LINC02539-201ENST00000411615 SOGA1O94964 1423 aa14.81□□□□□ -0.04
LINC02539-201ENST00000411615 TARBP1Q13395 1621 aaKnown RBP14.78□□□□□ -0.04
LINC02539-201ENST00000411615 SLC4A2P04920 1241 aa14.77□□□□□ -0.05
LINC02539-201ENST00000411615 U3KPZ7 1027 aaPredicted RBP14.77□□□□□ -0.05
LINC02539-201ENST00000411615 ABCA10Q8WWZ4 1543 aa14.76□□□□□ -0.05
LINC02539-201ENST00000411615 RAD54L2Q9Y4B4 1467 aa14.76□□□□□ -0.05
LINC02539-201ENST00000411615 WDR97A6NE52 1622 aa14.75□□□□□ -0.05
LINC02539-201ENST00000411615 KIF27Q86VH2 1401 aa14.66□□□□□ -0.06
LINC02539-201ENST00000411615 ZNF608Q9ULD9 1512 aaPredicted RBP14.66□□□□□ -0.06
LINC02539-201ENST00000411615 ABCA5Q8WWZ7 1642 aa14.66□□□□□ -0.06
LINC02539-201ENST00000411615 TDRD9Q8NDG6 1382 aaKnown RBP14.65□□□□□ -0.06
LINC02539-201ENST00000411615 GAPVD1Q14C86 1478 aa14.64□□□□□ -0.07
LINC02539-201ENST00000411615 EIF4G3O43432 1585 aaKnown RBP14.64□□□□□ -0.07
LINC02539-201ENST00000411615 AQRO60306 1485 aaKnown RBP eCLIP14.63□□□□□ -0.07
LINC02539-201ENST00000411615 EEA1Q15075 1411 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms