RNA–Protein interactions for RNA: ENST00000402583.5

CBX1-203, Transcript of chromobox 1, humanhuman

TSL 4

Gene CBX1, Length 578 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX1-203ENST00000402583 AEBP2Q6ZN18 517 aaPredicted RBP21.67■■□□□ 1.06
CBX1-203ENST00000402583 CHIC1Q5VXU3 224 aa21.4■■□□□ 1.02
CBX1-203ENST00000402583 NISCHQ9Y2I1 1504 aa19.92■□□□□ 0.78
CBX1-203ENST00000402583 PHF23Q9BUL5 403 aaPredicted RBP18.82■□□□□ 0.6
CBX1-203ENST00000402583 SENP3Q9H4L4 574 aaPredicted RBP18.4■□□□□ 0.54
CBX1-203ENST00000402583 PLPPR3Q6T4P5 718 aa17.49■□□□□ 0.39
CBX1-203ENST00000402583 CCDC180Q9P1Z9 1646 aa17.18■□□□□ 0.34
CBX1-203ENST00000402583 FOXD1Q16676 465 aa17.03■□□□□ 0.32
CBX1-203ENST00000402583 ZCCHC6Q5VYS8 1495 aaKnown RBP16.81■□□□□ 0.28
CBX1-203ENST00000402583 PPP6R1Q9UPN7 881 aa16.54■□□□□ 0.24
CBX1-203ENST00000402583 SHROOM4Q9ULL8 1493 aa16.54■□□□□ 0.24
CBX1-203ENST00000402583 ADRA2BP18089 450 aa16.52■□□□□ 0.24
CBX1-203ENST00000402583 DCAF1Q9Y4B6 1507 aa16.5■□□□□ 0.23
CBX1-203ENST00000402583 DCAF8L2P0C7V8 631 aa16.36■□□□□ 0.21
CBX1-203ENST00000402583 MYO15BQ96JP2 1530 aa16.16■□□□□ 0.18
CBX1-203ENST00000402583 SUPT5HO00267 1087 aaKnown RBP16.15■□□□□ 0.18
CBX1-203ENST00000402583 PIAS4Q8N2W9 510 aaPredicted RBP16.1■□□□□ 0.17
CBX1-203ENST00000402583 NACADO15069 1562 aa15.93■□□□□ 0.14
CBX1-203ENST00000402583 ABCC9O60706 1549 aa15.87■□□□□ 0.13
CBX1-203ENST00000402583 SCRIBQ14160 1630 aa15.84■□□□□ 0.13
CBX1-203ENST00000402583 RB1CC1Q8TDY2 1594 aa15.7■□□□□ 0.1
CBX1-203ENST00000402583 MSH5O43196 834 aa15.64■□□□□ 0.09
CBX1-203ENST00000402583 RSF1Q96T23 1441 aaPredicted RBP15.61■□□□□ 0.09
CBX1-203ENST00000402583 PPP4R3CPQ6ZMV5 832 aa15.42■□□□□ 0.06
CBX1-203ENST00000402583 CECR2Q9BXF3 1484 aa15.4■□□□□ 0.06
CBX1-203ENST00000402583 BAZ1AQ9NRL2 1556 aaPredicted RBP15.38■□□□□ 0.05
CBX1-203ENST00000402583 MROH2BQ7Z745 1585 aa15.37■□□□□ 0.05
CBX1-203ENST00000402583 KCNA4P22459 653 aa15.27■□□□□ 0.04
CBX1-203ENST00000402583 WIZO95785 1651 aa15.25■□□□□ 0.03
CBX1-203ENST00000402583 UNC13AQ9UPW8 1703 aa15.24■□□□□ 0.03
CBX1-203ENST00000402583 SMARCA4P51532 1647 aa15.21■□□□□ 0.03
CBX1-203ENST00000402583 TRIM41Q8WV44 630 aa15.2■□□□□ 0.02
CBX1-203ENST00000402583 SCAF1Q9H7N4 1312 aaKnown RBP15.17■□□□□ 0.02
CBX1-203ENST00000402583 TOP2AP11388 1531 aaKnown RBP15.17■□□□□ 0.02
CBX1-203ENST00000402583 BICRAQ9NZM4 1560 aa15.14■□□□□ 0.01
CBX1-203ENST00000402583 NCBP3Q53F19 620 aaKnown RBP15.1■□□□□ 0.01
CBX1-203ENST00000402583 PABPN1Q86U42 306 aaKnown RBP eCLIP15.05■□□□□ -0
CBX1-203ENST00000402583 LOC105371045A0A1W2PR82 267 aa15.04■□□□□ -0
CBX1-203ENST00000402583 EIF4G1Q04637 1599 aaKnown RBP15.02■□□□□ -0
CBX1-203ENST00000402583 PEG3Q9GZU2 1588 aa15.02□□□□□ -0.01
CBX1-203ENST00000402583 SMARCA2P51531 1590 aa15.01□□□□□ -0.01
CBX1-203ENST00000402583 CCDC88BA6NC98 1476 aa15.01□□□□□ -0.01
CBX1-203ENST00000402583 CNKSR2Q8WXI2 1034 aa14.96□□□□□ -0.01
CBX1-203ENST00000402583 MAPK8IP2Q13387 824 aaPredicted RBP14.93□□□□□ -0.02
CBX1-203ENST00000402583 FAM9AQ8IZU1 332 aaPredicted RBP14.88□□□□□ -0.03
CBX1-203ENST00000402583 ATAD2BQ9ULI0 1458 aa14.88□□□□□ -0.03
CBX1-203ENST00000402583 BAZ1BQ9UIG0 1483 aaKnown RBP14.85□□□□□ -0.03
CBX1-203ENST00000402583 NPM3O75607 178 aaKnown RBP14.85□□□□□ -0.03
CBX1-203ENST00000402583 PCGF6Q9BYE7 350 aa14.84□□□□□ -0.03
CBX1-203ENST00000402583 TRIM26Q12899 539 aaPredicted RBP14.8□□□□□ -0.04
CBX1-203ENST00000402583 ABCC8Q09428 1581 aa14.79□□□□□ -0.04
CBX1-203ENST00000402583 EEA1Q15075 1411 aa14.79□□□□□ -0.04
CBX1-203ENST00000402583 HRCP23327 699 aa14.78□□□□□ -0.04
CBX1-203ENST00000402583 DMRT2Q9Y5R5 561 aa14.72□□□□□ -0.05
CBX1-203ENST00000402583 WRNQ14191 1432 aaPredicted RBP eCLIP14.72□□□□□ -0.05
CBX1-203ENST00000402583 HMGXB3Q12766 1538 aa14.71□□□□□ -0.05
CBX1-203ENST00000402583 NCAPD3P42695 1498 aa14.69□□□□□ -0.06
CBX1-203ENST00000402583 EHMT2Q96KQ7 1210 aa14.63□□□□□ -0.07
CBX1-203ENST00000402583 SOGA1O94964 1423 aa14.62□□□□□ -0.07
CBX1-203ENST00000402583 CSRNP3Q8WYN3 585 aa14.62□□□□□ -0.07
CBX1-203ENST00000402583 RNF216Q9NWF9 866 aaPredicted RBP14.62□□□□□ -0.07
CBX1-203ENST00000402583 SLC4A1APQ9BWU0 796 aaKnown RBP14.59□□□□□ -0.07
CBX1-203ENST00000402583 TNIKQ9UKE5 1360 aa14.59□□□□□ -0.07
CBX1-203ENST00000402583 SYNJ1O43426 1573 aa14.58□□□□□ -0.08
CBX1-203ENST00000402583 GOLGA3Q08378 1498 aa14.57□□□□□ -0.08
CBX1-203ENST00000402583 CEP164Q9UPV0 1460 aa14.52□□□□□ -0.08
CBX1-203ENST00000402583 CEP162Q5TB80 1403 aa14.52□□□□□ -0.08
CBX1-203ENST00000402583 TOP2BQ02880 1626 aa14.52□□□□□ -0.09
CBX1-203ENST00000402583 RUSC2Q8N2Y8 1516 aa14.51□□□□□ -0.09
CBX1-203ENST00000402583 HOXD11P31277 338 aaPredicted RBP14.5□□□□□ -0.09
CBX1-203ENST00000402583 ZEB1P37275 1124 aaPredicted RBP14.5□□□□□ -0.09
CBX1-203ENST00000402583 KIF21BO75037 1637 aa14.5□□□□□ -0.09
CBX1-203ENST00000402583 UBTFP17480 764 aaKnown RBP14.49□□□□□ -0.09
CBX1-203ENST00000402583 BIVM-ERCC5R4GMW8 1640 aa14.48□□□□□ -0.09
CBX1-203ENST00000402583 CFTRP13569 1480 aa14.48□□□□□ -0.09
CBX1-203ENST00000402583 DNAJC5BQ9UF47 199 aa14.46□□□□□ -0.09
CBX1-203ENST00000402583 CUX1P39880 1505 aa14.36□□□□□ -0.11
CBX1-203ENST00000402583 CADPSQ9ULU8 1353 aa14.36□□□□□ -0.11
CBX1-203ENST00000402583 PRDM2Q13029 1718 aa14.36□□□□□ -0.11
CBX1-203ENST00000402583 CC2D2AQ9P2K1 1620 aa14.36□□□□□ -0.11
CBX1-203ENST00000402583 ERICH3Q5RHP9 1530 aa14.35□□□□□ -0.11
CBX1-203ENST00000402583 CLIP1P30622 1438 aa14.33□□□□□ -0.11
CBX1-203ENST00000402583 KIF27Q86VH2 1401 aa14.33□□□□□ -0.11
CBX1-203ENST00000402583 PPARGC1BQ86YN6 1023 aaKnown RBP14.31□□□□□ -0.12
CBX1-203ENST00000402583 RAPGEF2Q9Y4G8 1499 aa14.31□□□□□ -0.12
CBX1-203ENST00000402583 PRXQ9BXM0 1461 aa14.3□□□□□ -0.12
CBX1-203ENST00000402583 VPS8Q8N3P4 1428 aa14.26□□□□□ -0.13
CBX1-203ENST00000402583 APLP2Q06481 763 aa14.23□□□□□ -0.13
CBX1-203ENST00000402583 FANCD2Q9BXW9 1451 aa14.19□□□□□ -0.14
CBX1-203ENST00000402583 CUX2O14529 1486 aa14.17□□□□□ -0.14
CBX1-203ENST00000402583 FGD5Q6ZNL6 1462 aa14.17□□□□□ -0.14
CBX1-203ENST00000402583 DNMBPQ6XZF7 1577 aa14.14□□□□□ -0.15
CBX1-203ENST00000402583 CCER1Q8TC90 406 aaPredicted RBP14.14□□□□□ -0.15
CBX1-203ENST00000402583 LAMC3Q9Y6N6 1575 aa14.13□□□□□ -0.15
CBX1-203ENST00000402583 TTBK1Q5TCY1 1321 aaPredicted RBP14.13□□□□□ -0.15
CBX1-203ENST00000402583 IGF1RP08069 1367 aa14.11□□□□□ -0.15
CBX1-203ENST00000402583 ARAP1Q96P48 1450 aa14.1□□□□□ -0.15
CBX1-203ENST00000402583 RANGAP1P46060 587 aaPredicted RBP14.08□□□□□ -0.16
CBX1-203ENST00000402583 CARMIL1Q5VZK9 1371 aa14.08□□□□□ -0.16
CBX1-203ENST00000402583 TOPBP1Q92547 1522 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms