RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 AEBP2Q6ZN18 517 aaPredicted RBP27.41■■□□□ 1.98
VPS53-203ENST00000401468 CHIC1Q5VXU3 224 aa26.18■■□□□ 1.78
VPS53-203ENST00000401468 SENP3Q9H4L4 574 aaPredicted RBP23.4■■□□□ 1.34
VPS53-203ENST00000401468 PHF23Q9BUL5 403 aaPredicted RBP23.1■■□□□ 1.29
VPS53-203ENST00000401468 NISCHQ9Y2I1 1504 aa22.36■■□□□ 1.17
VPS53-203ENST00000401468 FOXD1Q16676 465 aa21.77■■□□□ 1.08
VPS53-203ENST00000401468 PLPPR3Q6T4P5 718 aa21.01■□□□□ 0.95
VPS53-203ENST00000401468 PPP6R1Q9UPN7 881 aa20.45■□□□□ 0.86
VPS53-203ENST00000401468 ADRA2BP18089 450 aa20.42■□□□□ 0.86
VPS53-203ENST00000401468 PIAS4Q8N2W9 510 aaPredicted RBP20.42■□□□□ 0.86
VPS53-203ENST00000401468 MSH5O43196 834 aa20.34■□□□□ 0.85
VPS53-203ENST00000401468 CCDC180Q9P1Z9 1646 aa20.06■□□□□ 0.8
VPS53-203ENST00000401468 ABCC9O60706 1549 aa20.02■□□□□ 0.79
VPS53-203ENST00000401468 POTEDQ86YR6 584 aa19.59■□□□□ 0.73
VPS53-203ENST00000401468 DNAJC5BQ9UF47 199 aa19.27■□□□□ 0.68
VPS53-203ENST00000401468 RB1CC1Q8TDY2 1594 aa18.99■□□□□ 0.63
VPS53-203ENST00000401468 DCAF8L2P0C7V8 631 aa18.95■□□□□ 0.62
VPS53-203ENST00000401468 UNC13AQ9UPW8 1703 aa18.9■□□□□ 0.62
VPS53-203ENST00000401468 NACADO15069 1562 aa18.82■□□□□ 0.6
VPS53-203ENST00000401468 SCAF1Q9H7N4 1312 aaKnown RBP18.71■□□□□ 0.59
VPS53-203ENST00000401468 MAPK8IP2Q13387 824 aaPredicted RBP18.7■□□□□ 0.58
VPS53-203ENST00000401468 PABPN1Q86U42 306 aaKnown RBP eCLIP18.64■□□□□ 0.57
VPS53-203ENST00000401468 DMRT2Q9Y5R5 561 aa18.56■□□□□ 0.56
VPS53-203ENST00000401468 ZCCHC6Q5VYS8 1495 aaKnown RBP18.55■□□□□ 0.56
VPS53-203ENST00000401468 BICRAQ9NZM4 1560 aa18.52■□□□□ 0.56
VPS53-203ENST00000401468 MYO15BQ96JP2 1530 aa18.45■□□□□ 0.54
VPS53-203ENST00000401468 SCRIBQ14160 1630 aa18.45■□□□□ 0.54
VPS53-203ENST00000401468 PPP4R3CPQ6ZMV5 832 aa18.42■□□□□ 0.54
VPS53-203ENST00000401468 DNAJC5Q9H3Z4 198 aa18.41■□□□□ 0.54
VPS53-203ENST00000401468 DCAF1Q9Y4B6 1507 aa18.33■□□□□ 0.52
VPS53-203ENST00000401468 CC2D2AQ9P2K1 1620 aa18.09■□□□□ 0.49
VPS53-203ENST00000401468 CNKSR2Q8WXI2 1034 aa18.05■□□□□ 0.48
VPS53-203ENST00000401468 EIF4G1Q04637 1599 aaKnown RBP18.02■□□□□ 0.48
VPS53-203ENST00000401468 SHROOM4Q9ULL8 1493 aa17.97■□□□□ 0.47
VPS53-203ENST00000401468 CECR2Q9BXF3 1484 aa17.91■□□□□ 0.46
VPS53-203ENST00000401468 HOXD11P31277 338 aaPredicted RBP17.91■□□□□ 0.46
VPS53-203ENST00000401468 DCAF8L1A6NGE4 600 aa17.88■□□□□ 0.45
VPS53-203ENST00000401468 RNF216Q9NWF9 866 aaPredicted RBP17.84■□□□□ 0.45
VPS53-203ENST00000401468 NCBP3Q53F19 620 aaKnown RBP17.79■□□□□ 0.44
VPS53-203ENST00000401468 SMARCA4P51532 1647 aa17.5■□□□□ 0.39
VPS53-203ENST00000401468 NPM3O75607 178 aaKnown RBP17.5■□□□□ 0.39
VPS53-203ENST00000401468 CACNB1Q02641 598 aaPredicted RBP17.39■□□□□ 0.37
VPS53-203ENST00000401468 ATAD2BQ9ULI0 1458 aa17.37■□□□□ 0.37
VPS53-203ENST00000401468 RNF39Q9H2S5 420 aa17.35■□□□□ 0.37
VPS53-203ENST00000401468 CUX2O14529 1486 aa17.35■□□□□ 0.37
VPS53-203ENST00000401468 SMARCA2P51531 1590 aa17.32■□□□□ 0.36
VPS53-203ENST00000401468 MROH2BQ7Z745 1585 aa17.32■□□□□ 0.36
VPS53-203ENST00000401468 BAZ1AQ9NRL2 1556 aaPredicted RBP17.32■□□□□ 0.36
VPS53-203ENST00000401468 NCAPD3P42695 1498 aa17.31■□□□□ 0.36
VPS53-203ENST00000401468 KCNA4P22459 653 aa17.3■□□□□ 0.36
VPS53-203ENST00000401468 HMGXB3Q12766 1538 aa17.27■□□□□ 0.36
VPS53-203ENST00000401468 NESP48681 1621 aa17.27■□□□□ 0.36
VPS53-203ENST00000401468 BAZ1BQ9UIG0 1483 aaKnown RBP17.25■□□□□ 0.35
VPS53-203ENST00000401468 WIZO95785 1651 aa17.24■□□□□ 0.35
VPS53-203ENST00000401468 ERCC6Q03468 1493 aa17.2■□□□□ 0.34
VPS53-203ENST00000401468 PEG3Q9GZU2 1588 aa17.19■□□□□ 0.34
VPS53-203ENST00000401468 KIF21AQ7Z4S6 1674 aa17.16■□□□□ 0.34
VPS53-203ENST00000401468 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.14■□□□□ 0.33
VPS53-203ENST00000401468 C1QBPQ07021 282 aaKnown RBP17.11■□□□□ 0.33
VPS53-203ENST00000401468 TRIM41Q8WV44 630 aa17.11■□□□□ 0.33
VPS53-203ENST00000401468 THOC2Q8NI27 1593 aaKnown RBP17.03■□□□□ 0.32
VPS53-203ENST00000401468 LAMC3Q9Y6N6 1575 aa17.01■□□□□ 0.31
VPS53-203ENST00000401468 RSF1Q96T23 1441 aaPredicted RBP16.91■□□□□ 0.3
VPS53-203ENST00000401468 TOP2AP11388 1531 aaKnown RBP16.86■□□□□ 0.29
VPS53-203ENST00000401468 CADPSQ9ULU8 1353 aa16.83■□□□□ 0.28
VPS53-203ENST00000401468 PRDM2Q13029 1718 aa16.82■□□□□ 0.28
VPS53-203ENST00000401468 PDS5BQ9NTI5 1447 aa16.82■□□□□ 0.28
VPS53-203ENST00000401468 MRC2Q9UBG0 1479 aa16.76■□□□□ 0.27
VPS53-203ENST00000401468 U3KPZ7 1027 aaPredicted RBP16.75■□□□□ 0.27
VPS53-203ENST00000401468 CEP164Q9UPV0 1460 aa16.73■□□□□ 0.27
VPS53-203ENST00000401468 FANCD2Q9BXW9 1451 aa16.73■□□□□ 0.27
VPS53-203ENST00000401468 WDR62O43379 1518 aa16.72■□□□□ 0.27
VPS53-203ENST00000401468 CCDC88BA6NC98 1476 aa16.67■□□□□ 0.26
VPS53-203ENST00000401468 CFTRP13569 1480 aa16.67■□□□□ 0.26
VPS53-203ENST00000401468 SLC4A2P04920 1241 aa16.66■□□□□ 0.26
VPS53-203ENST00000401468 URB2Q14146 1524 aaKnown RBP16.64■□□□□ 0.25
VPS53-203ENST00000401468 CAPN15O75808 1086 aa16.48■□□□□ 0.23
VPS53-203ENST00000401468 SPINK5Q9NQ38 1064 aaPredicted RBP16.48■□□□□ 0.23
VPS53-203ENST00000401468 TOPBP1Q92547 1522 aa16.45■□□□□ 0.22
VPS53-203ENST00000401468 ZNF608Q9ULD9 1512 aaPredicted RBP16.45■□□□□ 0.22
VPS53-203ENST00000401468 SUPT5HO00267 1087 aaKnown RBP16.41■□□□□ 0.22
VPS53-203ENST00000401468 EIF4G3O43432 1585 aaKnown RBP16.4■□□□□ 0.22
VPS53-203ENST00000401468 DNMBPQ6XZF7 1577 aa16.4■□□□□ 0.22
VPS53-203ENST00000401468 CHD1O14646 1710 aa16.39■□□□□ 0.21
VPS53-203ENST00000401468 SLC4A1APQ9BWU0 796 aaKnown RBP16.38■□□□□ 0.21
VPS53-203ENST00000401468 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.35■□□□□ 0.21
VPS53-203ENST00000401468 HNRNPUL2Q1KMD3 747 aaKnown RBP16.35■□□□□ 0.21
VPS53-203ENST00000401468 TARBP1Q13395 1621 aaKnown RBP16.34■□□□□ 0.21
VPS53-203ENST00000401468 APLP2Q06481 763 aa16.34■□□□□ 0.21
VPS53-203ENST00000401468 IFT140Q96RY7 1462 aa16.33■□□□□ 0.2
VPS53-203ENST00000401468 RIMBP3CA6NJZ7 1639 aa16.32■□□□□ 0.2
VPS53-203ENST00000401468 RIMBP3BA6NNM3 1639 aa16.32■□□□□ 0.2
VPS53-203ENST00000401468 RIMBP3Q9UFD9 1639 aa16.32■□□□□ 0.2
VPS53-203ENST00000401468 DSG3P32926 999 aa16.3■□□□□ 0.2
VPS53-203ENST00000401468 RAD54L2Q9Y4B4 1467 aa16.29■□□□□ 0.2
VPS53-203ENST00000401468 AQRO60306 1485 aaKnown RBP eCLIP16.28■□□□□ 0.27e-8■■■■■ 27.9
VPS53-203ENST00000401468 POLA1P09884 1462 aaPredicted RBP16.28■□□□□ 0.2
VPS53-203ENST00000401468 OSCARQ8IYS5 282 aa16.27■□□□□ 0.2
VPS53-203ENST00000401468 CUX1P39880 1505 aa16.26■□□□□ 0.19
VPS53-203ENST00000401468 TRHP20396 242 aaPredicted RBP16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms