RNA–Protein interactions for RNA: ENST00000400306.2

LINC02408-201, Transcript of long intergenic non-protein coding RNA 2408, humanhuman

TSL 2 BASIC

Gene LINC02408, Length 1,766 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC02408-201ENST00000400306 AEBP2Q6ZN18 517 aaPredicted RBP22.14■■□□□ 1.13
LINC02408-201ENST00000400306 CHIC1Q5VXU3 224 aa21.31■■□□□ 1
LINC02408-201ENST00000400306 SENP3Q9H4L4 574 aaPredicted RBP18.91■□□□□ 0.62
LINC02408-201ENST00000400306 PHF23Q9BUL5 403 aaPredicted RBP18.68■□□□□ 0.58
LINC02408-201ENST00000400306 NISCHQ9Y2I1 1504 aa18.39■□□□□ 0.53
LINC02408-201ENST00000400306 FOXD1Q16676 465 aa17.56■□□□□ 0.4
LINC02408-201ENST00000400306 PLPPR3Q6T4P5 718 aa17.17■□□□□ 0.34
LINC02408-201ENST00000400306 ABCC9O60706 1549 aa16.72■□□□□ 0.27
LINC02408-201ENST00000400306 PPP6R1Q9UPN7 881 aa16.59■□□□□ 0.25
LINC02408-201ENST00000400306 ADRA2BP18089 450 aa16.56■□□□□ 0.24
LINC02408-201ENST00000400306 POTEDQ86YR6 584 aa16.51■□□□□ 0.23
LINC02408-201ENST00000400306 PIAS4Q8N2W9 510 aaPredicted RBP16.5■□□□□ 0.23
LINC02408-201ENST00000400306 MSH5O43196 834 aa16.38■□□□□ 0.21
LINC02408-201ENST00000400306 CCDC180Q9P1Z9 1646 aa16.26■□□□□ 0.19
LINC02408-201ENST00000400306 DNAJC5BQ9UF47 199 aa16.16■□□□□ 0.18
LINC02408-201ENST00000400306 RB1CC1Q8TDY2 1594 aa15.71■□□□□ 0.1
LINC02408-201ENST00000400306 UNC13AQ9UPW8 1703 aa15.5■□□□□ 0.07
LINC02408-201ENST00000400306 NACADO15069 1562 aa15.43■□□□□ 0.06
LINC02408-201ENST00000400306 PABPN1Q86U42 306 aaKnown RBP eCLIP15.39■□□□□ 0.05
LINC02408-201ENST00000400306 ZCCHC6Q5VYS8 1495 aaKnown RBP15.38■□□□□ 0.05
LINC02408-201ENST00000400306 DNAJC5Q9H3Z4 198 aa15.31■□□□□ 0.04
LINC02408-201ENST00000400306 DCAF8L2P0C7V8 631 aa15.3■□□□□ 0.04
LINC02408-201ENST00000400306 BICRAQ9NZM4 1560 aa15.26■□□□□ 0.03
LINC02408-201ENST00000400306 SCAF1Q9H7N4 1312 aaKnown RBP15.23■□□□□ 0.03
LINC02408-201ENST00000400306 DCAF1Q9Y4B6 1507 aa15.16■□□□□ 0.02
LINC02408-201ENST00000400306 CC2D2AQ9P2K1 1620 aa15.14■□□□□ 0.01
LINC02408-201ENST00000400306 MAPK8IP2Q13387 824 aaPredicted RBP15.13■□□□□ 0.01
LINC02408-201ENST00000400306 CECR2Q9BXF3 1484 aa15.13■□□□□ 0.01
LINC02408-201ENST00000400306 MYO15BQ96JP2 1530 aa15.09■□□□□ 0.01
LINC02408-201ENST00000400306 PPP4R3CPQ6ZMV5 832 aa15.07■□□□□ 0
LINC02408-201ENST00000400306 DMRT2Q9Y5R5 561 aa15.02□□□□□ -0.01
LINC02408-201ENST00000400306 SHROOM4Q9ULL8 1493 aa14.98□□□□□ -0.01
LINC02408-201ENST00000400306 EIF4G1Q04637 1599 aaKnown RBP14.93□□□□□ -0.02
LINC02408-201ENST00000400306 SCRIBQ14160 1630 aa14.91□□□□□ -0.02
LINC02408-201ENST00000400306 CNKSR2Q8WXI2 1034 aa14.75□□□□□ -0.05
LINC02408-201ENST00000400306 CUX2O14529 1486 aa14.7□□□□□ -0.06
LINC02408-201ENST00000400306 NCBP3Q53F19 620 aaKnown RBP14.61□□□□□ -0.07
LINC02408-201ENST00000400306 HOXD11P31277 338 aaPredicted RBP14.56□□□□□ -0.08
LINC02408-201ENST00000400306 RNF216Q9NWF9 866 aaPredicted RBP14.54□□□□□ -0.08
LINC02408-201ENST00000400306 ERCC6Q03468 1493 aa14.49□□□□□ -0.09
LINC02408-201ENST00000400306 DCAF8L1A6NGE4 600 aa14.42□□□□□ -0.1
LINC02408-201ENST00000400306 TRIM41Q8WV44 630 aa14.39□□□□□ -0.11
LINC02408-201ENST00000400306 NPM3O75607 178 aaKnown RBP14.34□□□□□ -0.11
LINC02408-201ENST00000400306 KCNA4P22459 653 aa14.29□□□□□ -0.12
LINC02408-201ENST00000400306 THOC2Q8NI27 1593 aaKnown RBP14.26□□□□□ -0.13
LINC02408-201ENST00000400306 SMARCA4P51532 1647 aa14.24□□□□□ -0.13
LINC02408-201ENST00000400306 MROH2BQ7Z745 1585 aa14.22□□□□□ -0.13
LINC02408-201ENST00000400306 BAZ1AQ9NRL2 1556 aaPredicted RBP14.22□□□□□ -0.13
LINC02408-201ENST00000400306 NESP48681 1621 aa14.19□□□□□ -0.14
LINC02408-201ENST00000400306 NCAPD3P42695 1498 aa14.19□□□□□ -0.14
LINC02408-201ENST00000400306 KIF21AQ7Z4S6 1674 aa14.13□□□□□ -0.15
LINC02408-201ENST00000400306 RSF1Q96T23 1441 aaPredicted RBP14.12□□□□□ -0.15
LINC02408-201ENST00000400306 WIZO95785 1651 aa14.12□□□□□ -0.15
LINC02408-201ENST00000400306 HMGXB3Q12766 1538 aa14.1□□□□□ -0.15
LINC02408-201ENST00000400306 SMARCA2P51531 1590 aa14.09□□□□□ -0.15
LINC02408-201ENST00000400306 ATAD2BQ9ULI0 1458 aa14.06□□□□□ -0.16
LINC02408-201ENST00000400306 SUPT5HO00267 1087 aaKnown RBP14.05□□□□□ -0.16
LINC02408-201ENST00000400306 LAMC3Q9Y6N6 1575 aa14.05□□□□□ -0.16
LINC02408-201ENST00000400306 PEG3Q9GZU2 1588 aa14.03□□□□□ -0.16
LINC02408-201ENST00000400306 BAZ1BQ9UIG0 1483 aaKnown RBP13.96□□□□□ -0.17
LINC02408-201ENST00000400306 RNF39Q9H2S5 420 aa13.96□□□□□ -0.17
LINC02408-201ENST00000400306 TOP2AP11388 1531 aaKnown RBP13.92□□□□□ -0.18
LINC02408-201ENST00000400306 PDS5BQ9NTI5 1447 aa13.91□□□□□ -0.18
LINC02408-201ENST00000400306 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.91□□□□□ -0.18
LINC02408-201ENST00000400306 CACNB1Q02641 598 aaPredicted RBP13.9□□□□□ -0.18
LINC02408-201ENST00000400306 WDR62O43379 1518 aa13.88□□□□□ -0.19
LINC02408-201ENST00000400306 MRC2Q9UBG0 1479 aa13.87□□□□□ -0.19
LINC02408-201ENST00000400306 RIMBP3CA6NJZ7 1639 aa13.86□□□□□ -0.19
LINC02408-201ENST00000400306 RIMBP3BA6NNM3 1639 aa13.86□□□□□ -0.19
LINC02408-201ENST00000400306 RIMBP3Q9UFD9 1639 aa13.86□□□□□ -0.19
LINC02408-201ENST00000400306 OSCARQ8IYS5 282 aa13.84□□□□□ -0.19
LINC02408-201ENST00000400306 C1QBPQ07021 282 aaKnown RBP13.81□□□□□ -0.2
LINC02408-201ENST00000400306 CCDC88BA6NC98 1476 aa13.77□□□□□ -0.21
LINC02408-201ENST00000400306 CADPSQ9ULU8 1353 aa13.71□□□□□ -0.22
LINC02408-201ENST00000400306 ARHGEF11O15085 1522 aa13.69□□□□□ -0.22
LINC02408-201ENST00000400306 CEP164Q9UPV0 1460 aa13.68□□□□□ -0.22
LINC02408-201ENST00000400306 TRHP20396 242 aaPredicted RBP13.63□□□□□ -0.23
LINC02408-201ENST00000400306 SLC4A2P04920 1241 aa13.61□□□□□ -0.23
LINC02408-201ENST00000400306 U3KPZ7 1027 aaPredicted RBP13.6□□□□□ -0.23
LINC02408-201ENST00000400306 FANCD2Q9BXW9 1451 aa13.59□□□□□ -0.23
LINC02408-201ENST00000400306 SLC4A1APQ9BWU0 796 aaKnown RBP13.57□□□□□ -0.24
LINC02408-201ENST00000400306 CFTRP13569 1480 aa13.57□□□□□ -0.24
LINC02408-201ENST00000400306 PRDM2Q13029 1718 aa13.57□□□□□ -0.24
LINC02408-201ENST00000400306 CYB5RLQ6IPT4 315 aa13.55□□□□□ -0.24
LINC02408-201ENST00000400306 URB2Q14146 1524 aaKnown RBP13.53□□□□□ -0.24
LINC02408-201ENST00000400306 CHD1O14646 1710 aa13.53□□□□□ -0.24
LINC02408-201ENST00000400306 ARAP1Q96P48 1450 aa13.5□□□□□ -0.25
LINC02408-201ENST00000400306 ZNF608Q9ULD9 1512 aaPredicted RBP13.45□□□□□ -0.26
LINC02408-201ENST00000400306 EIF4G3O43432 1585 aaKnown RBP13.43□□□□□ -0.26
LINC02408-201ENST00000400306 IFT140Q96RY7 1462 aa13.42□□□□□ -0.26
LINC02408-201ENST00000400306 ABCC8Q09428 1581 aa13.41□□□□□ -0.26
LINC02408-201ENST00000400306 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.37□□□□□ -0.27
LINC02408-201ENST00000400306 HNRNPUL2Q1KMD3 747 aaKnown RBP13.37□□□□□ -0.27
LINC02408-201ENST00000400306 APLP2Q06481 763 aa13.35□□□□□ -0.27
LINC02408-201ENST00000400306 CAPN15O75808 1086 aa13.34□□□□□ -0.27
LINC02408-201ENST00000400306 SPINK5Q9NQ38 1064 aaPredicted RBP13.32□□□□□ -0.28
LINC02408-201ENST00000400306 CUX1P39880 1505 aa13.32□□□□□ -0.28
LINC02408-201ENST00000400306 SYNJ1O43426 1573 aa13.32□□□□□ -0.28
LINC02408-201ENST00000400306 WRNQ14191 1432 aaPredicted RBP eCLIP13.3□□□□□ -0.28
LINC02408-201ENST00000400306 DNMBPQ6XZF7 1577 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms