RNA–Protein interactions for RNA: ENST00000397459.6

CNTN4-201, Transcript of contactin 4, humanhuman

TSL 1 (best) BASIC

Gene CNTN4, Length 2,322 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN4-201ENST00000397459 NISCHQ9Y2I1 1504 aa16.87■□□□□ 0.29
CNTN4-201ENST00000397459 CCDC180Q9P1Z9 1646 aa14.59□□□□□ -0.07
CNTN4-201ENST00000397459 ZCCHC6Q5VYS8 1495 aaKnown RBP14.19□□□□□ -0.14
CNTN4-201ENST00000397459 DCAF8L2P0C7V8 631 aa13.97□□□□□ -0.17
CNTN4-201ENST00000397459 SHROOM4Q9ULL8 1493 aa13.94□□□□□ -0.18
CNTN4-201ENST00000397459 DCAF1Q9Y4B6 1507 aa13.91□□□□□ -0.18
CNTN4-201ENST00000397459 ABCC9O60706 1549 aa13.77□□□□□ -0.21
CNTN4-201ENST00000397459 MYO15BQ96JP2 1530 aa13.68□□□□□ -0.22
CNTN4-201ENST00000397459 SUPT5HO00267 1087 aaKnown RBP13.64□□□□□ -0.23
CNTN4-201ENST00000397459 NACADO15069 1562 aa13.58□□□□□ -0.24
CNTN4-201ENST00000397459 SCRIBQ14160 1630 aa13.51□□□□□ -0.25
CNTN4-201ENST00000397459 CHIC1Q5VXU3 224 aa13.49□□□□□ -0.25
CNTN4-201ENST00000397459 RB1CC1Q8TDY2 1594 aa13.43□□□□□ -0.26
CNTN4-201ENST00000397459 HRCP23327 699 aa13.36□□□□□ -0.27
CNTN4-201ENST00000397459 UNC13AQ9UPW8 1703 aa13.21□□□□□ -0.3
CNTN4-201ENST00000397459 RSF1Q96T23 1441 aaPredicted RBP13.16□□□□□ -0.3
CNTN4-201ENST00000397459 CECR2Q9BXF3 1484 aa13.14□□□□□ -0.31
CNTN4-201ENST00000397459 BICRAQ9NZM4 1560 aa13.07□□□□□ -0.32
CNTN4-201ENST00000397459 PCGF6Q9BYE7 350 aa13.07□□□□□ -0.32
CNTN4-201ENST00000397459 MROH2BQ7Z745 1585 aa13.06□□□□□ -0.32
CNTN4-201ENST00000397459 PABPN1Q86U42 306 aaKnown RBP eCLIP13.05□□□□□ -0.32
CNTN4-201ENST00000397459 TRIM26Q12899 539 aaPredicted RBP13.05□□□□□ -0.32
CNTN4-201ENST00000397459 ZEB1P37275 1124 aaPredicted RBP13.02□□□□□ -0.32
CNTN4-201ENST00000397459 BAZ1AQ9NRL2 1556 aaPredicted RBP12.99□□□□□ -0.33
CNTN4-201ENST00000397459 WIZO95785 1651 aa12.97□□□□□ -0.33
CNTN4-201ENST00000397459 SMARCA4P51532 1647 aa12.93□□□□□ -0.34
CNTN4-201ENST00000397459 TRIM41Q8WV44 630 aa12.88□□□□□ -0.35
CNTN4-201ENST00000397459 LOC105371045A0A1W2PR82 267 aa12.88□□□□□ -0.35
CNTN4-201ENST00000397459 TOP2AP11388 1531 aaKnown RBP12.8□□□□□ -0.36
CNTN4-201ENST00000397459 PEG3Q9GZU2 1588 aa12.75□□□□□ -0.37
CNTN4-201ENST00000397459 PELP1Q8IZL8 1130 aaKnown RBP12.74□□□□□ -0.37
CNTN4-201ENST00000397459 EIF4G1Q04637 1599 aaKnown RBP12.72□□□□□ -0.37
CNTN4-201ENST00000397459 CCDC88BA6NC98 1476 aa12.71□□□□□ -0.37
CNTN4-201ENST00000397459 ATAD2BQ9ULI0 1458 aa12.7□□□□□ -0.38
CNTN4-201ENST00000397459 SMARCA2P51531 1590 aa12.7□□□□□ -0.38
CNTN4-201ENST00000397459 PPARGC1BQ86YN6 1023 aaKnown RBP12.7□□□□□ -0.38
CNTN4-201ENST00000397459 EEA1Q15075 1411 aa12.66□□□□□ -0.38
CNTN4-201ENST00000397459 BAZ1BQ9UIG0 1483 aaKnown RBP12.63□□□□□ -0.39
CNTN4-201ENST00000397459 WRNQ14191 1432 aaPredicted RBP eCLIP12.62□□□□□ -0.39
CNTN4-201ENST00000397459 MYT1Q01538 1121 aa12.59□□□□□ -0.39
CNTN4-201ENST00000397459 NCAPD3P42695 1498 aa12.55□□□□□ -0.4
CNTN4-201ENST00000397459 HMGXB3Q12766 1538 aa12.53□□□□□ -0.4
CNTN4-201ENST00000397459 FAM9AQ8IZU1 332 aaPredicted RBP12.52□□□□□ -0.41
CNTN4-201ENST00000397459 TNIKQ9UKE5 1360 aa12.5□□□□□ -0.41
CNTN4-201ENST00000397459 ABCC8Q09428 1581 aa12.5□□□□□ -0.41
CNTN4-201ENST00000397459 CC2D2AQ9P2K1 1620 aa12.44□□□□□ -0.42
CNTN4-201ENST00000397459 CEP162Q5TB80 1403 aa12.42□□□□□ -0.42
CNTN4-201ENST00000397459 GOLGA3Q08378 1498 aa12.41□□□□□ -0.42
CNTN4-201ENST00000397459 KIF21BO75037 1637 aa12.38□□□□□ -0.43
CNTN4-201ENST00000397459 CCER1Q8TC90 406 aaPredicted RBP12.36□□□□□ -0.43
CNTN4-201ENST00000397459 CEP164Q9UPV0 1460 aa12.36□□□□□ -0.43
CNTN4-201ENST00000397459 CSRNP3Q8WYN3 585 aa12.36□□□□□ -0.43
CNTN4-201ENST00000397459 SYNJ1O43426 1573 aa12.33□□□□□ -0.44
CNTN4-201ENST00000397459 CFTRP13569 1480 aa12.32□□□□□ -0.44
CNTN4-201ENST00000397459 SOGA1O94964 1423 aa12.3□□□□□ -0.44
CNTN4-201ENST00000397459 CENPBP07199 599 aaPredicted RBP12.29□□□□□ -0.44
CNTN4-201ENST00000397459 EHMT2Q96KQ7 1210 aa12.29□□□□□ -0.44
CNTN4-201ENST00000397459 RUSC2Q8N2Y8 1516 aa12.26□□□□□ -0.45
CNTN4-201ENST00000397459 CADPSQ9ULU8 1353 aa12.26□□□□□ -0.45
CNTN4-201ENST00000397459 TOP2BQ02880 1626 aa12.24□□□□□ -0.45
CNTN4-201ENST00000397459 ACIN1Q9UKV3 1341 aaKnown RBP12.23□□□□□ -0.45
CNTN4-201ENST00000397459 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.23□□□□□ -0.45
CNTN4-201ENST00000397459 SCAF1Q9H7N4 1312 aaKnown RBP12.23□□□□□ -0.45
CNTN4-201ENST00000397459 PRDM2Q13029 1718 aa12.22□□□□□ -0.45
CNTN4-201ENST00000397459 VPS8Q8N3P4 1428 aa12.22□□□□□ -0.45
CNTN4-201ENST00000397459 BIVM-ERCC5R4GMW8 1640 aa12.22□□□□□ -0.45
CNTN4-201ENST00000397459 UBTFP17480 764 aaKnown RBP12.21□□□□□ -0.45
CNTN4-201ENST00000397459 DIEXFQ68CQ4 756 aaKnown RBP12.21□□□□□ -0.45
CNTN4-201ENST00000397459 CUX1P39880 1505 aa12.2□□□□□ -0.46
CNTN4-201ENST00000397459 ERICH3Q5RHP9 1530 aa12.2□□□□□ -0.46
CNTN4-201ENST00000397459 CLIP1P30622 1438 aa12.19□□□□□ -0.46
CNTN4-201ENST00000397459 CLSPNQ9HAW4 1339 aa12.19□□□□□ -0.46
CNTN4-201ENST00000397459 DNAJC5BQ9UF47 199 aa12.19□□□□□ -0.46
CNTN4-201ENST00000397459 TTBK1Q5TCY1 1321 aaPredicted RBP12.16□□□□□ -0.46
CNTN4-201ENST00000397459 ZNF316A6NFI3 1004 aaPredicted RBP12.16□□□□□ -0.46
CNTN4-201ENST00000397459 NESP48681 1621 aa12.14□□□□□ -0.47
CNTN4-201ENST00000397459 APLP2Q06481 763 aa12.13□□□□□ -0.47
CNTN4-201ENST00000397459 FANCD2Q9BXW9 1451 aa12.12□□□□□ -0.47
CNTN4-201ENST00000397459 LAMC3Q9Y6N6 1575 aa12.08□□□□□ -0.48
CNTN4-201ENST00000397459 PRXQ9BXM0 1461 aa12.06□□□□□ -0.48
CNTN4-201ENST00000397459 RAPGEF2Q9Y4G8 1499 aa12.05□□□□□ -0.48
CNTN4-201ENST00000397459 NEUROD1Q13562 356 aa12.05□□□□□ -0.48
CNTN4-201ENST00000397459 FGD5Q6ZNL6 1462 aa12.04□□□□□ -0.48
CNTN4-201ENST00000397459 KIF27Q86VH2 1401 aa12.04□□□□□ -0.48
CNTN4-201ENST00000397459 DNMBPQ6XZF7 1577 aa12.02□□□□□ -0.49
CNTN4-201ENST00000397459 TOPBP1Q92547 1522 aa12.01□□□□□ -0.49
CNTN4-201ENST00000397459 PDS5BQ9NTI5 1447 aa12□□□□□ -0.49
CNTN4-201ENST00000397459 CUX2O14529 1486 aa12□□□□□ -0.49
CNTN4-201ENST00000397459 MAP3K1Q13233 1512 aa11.98□□□□□ -0.49
CNTN4-201ENST00000397459 RRBP1Q9P2E9 1410 aaKnown RBP11.98□□□□□ -0.49
CNTN4-201ENST00000397459 GTF3C3Q9Y5Q9 886 aa11.98□□□□□ -0.49
CNTN4-201ENST00000397459 URB2Q14146 1524 aaKnown RBP11.98□□□□□ -0.49
CNTN4-201ENST00000397459 POLA1P09884 1462 aaPredicted RBP11.96□□□□□ -0.49
CNTN4-201ENST00000397459 KIF21AQ7Z4S6 1674 aa11.96□□□□□ -0.49
CNTN4-201ENST00000397459 RAD54L2Q9Y4B4 1467 aa11.96□□□□□ -0.5
CNTN4-201ENST00000397459 ARAP1Q96P48 1450 aa11.95□□□□□ -0.5
CNTN4-201ENST00000397459 IGF1RP08069 1367 aa11.95□□□□□ -0.5
CNTN4-201ENST00000397459 ABCA10Q8WWZ4 1543 aa11.92□□□□□ -0.5
CNTN4-201ENST00000397459 HNRNPUL2Q1KMD3 747 aaKnown RBP11.91□□□□□ -0.5
CNTN4-201ENST00000397459 DHX57Q6P158 1386 aaKnown RBP11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms