RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 NISCHQ9Y2I1 1504 aa6.72□□□□□ -1.33
VPS13C-203ENST00000395896 DCAF8L2P0C7V8 631 aa5.89□□□□□ -1.47
VPS13C-203ENST00000395896 CCDC180Q9P1Z9 1646 aa5.88□□□□□ -1.47
VPS13C-203ENST00000395896 ZCCHC6Q5VYS8 1495 aaKnown RBP5.61□□□□□ -1.51
VPS13C-203ENST00000395896 SUPT5HO00267 1087 aaKnown RBP5.6□□□□□ -1.51
VPS13C-203ENST00000395896 DCAF1Q9Y4B6 1507 aa5.59□□□□□ -1.51
VPS13C-203ENST00000395896 SHROOM4Q9ULL8 1493 aa5.58□□□□□ -1.52
VPS13C-203ENST00000395896 MYO15BQ96JP2 1530 aa5.55□□□□□ -1.52
VPS13C-203ENST00000395896 NACADO15069 1562 aa5.52□□□□□ -1.53
VPS13C-203ENST00000395896 RB1CC1Q8TDY2 1594 aa5.47□□□□□ -1.53
VPS13C-203ENST00000395896 ABCC9O60706 1549 aa5.47□□□□□ -1.53
VPS13C-203ENST00000395896 FAM9AQ8IZU1 332 aaPredicted RBP5.37□□□□□ -1.55
VPS13C-203ENST00000395896 TRIM41Q8WV44 630 aa5.37□□□□□ -1.55
VPS13C-203ENST00000395896 SCRIBQ14160 1630 aa5.34□□□□□ -1.55
VPS13C-203ENST00000395896 BAZ1AQ9NRL2 1556 aaPredicted RBP5.31□□□□□ -1.56
VPS13C-203ENST00000395896 APLP2Q06481 763 aa5.31□□□□□ -1.56
VPS13C-203ENST00000395896 CHIC1Q5VXU3 224 aa5.25□□□□□ -1.57
VPS13C-203ENST00000395896 RSF1Q96T23 1441 aaPredicted RBP5.21□□□□□ -1.57
VPS13C-203ENST00000395896 ZEB1P37275 1124 aaPredicted RBP5.21□□□□□ -1.58
VPS13C-203ENST00000395896 SMARCA2P51531 1590 aa5.21□□□□□ -1.58
VPS13C-203ENST00000395896 EEA1Q15075 1411 aa5.19□□□□□ -1.58
VPS13C-203ENST00000395896 UBTFP17480 764 aaKnown RBP5.19□□□□□ -1.58
VPS13C-203ENST00000395896 PABPN1Q86U42 306 aaKnown RBP eCLIP5.19□□□□□ -1.58
VPS13C-203ENST00000395896 BAZ1BQ9UIG0 1483 aaKnown RBP5.16□□□□□ -1.58
VPS13C-203ENST00000395896 SMARCA4P51532 1647 aa5.13□□□□□ -1.59
VPS13C-203ENST00000395896 TRIM26Q12899 539 aaPredicted RBP5.13□□□□□ -1.59
VPS13C-203ENST00000395896 TOP2AP11388 1531 aaKnown RBP5.1□□□□□ -1.59
VPS13C-203ENST00000395896 CSRNP3Q8WYN3 585 aa5.09□□□□□ -1.59
VPS13C-203ENST00000395896 MROH2BQ7Z745 1585 aa5.09□□□□□ -1.59
VPS13C-203ENST00000395896 PCGF6Q9BYE7 350 aa5.09□□□□□ -1.59
VPS13C-203ENST00000395896 CECR2Q9BXF3 1484 aa5.09□□□□□ -1.6
VPS13C-203ENST00000395896 UNC13AQ9UPW8 1703 aa5.07□□□□□ -1.6
VPS13C-203ENST00000395896 WRNQ14191 1432 aaPredicted RBP eCLIP5.07□□□□□ -1.6
VPS13C-203ENST00000395896 WIZO95785 1651 aa5.06□□□□□ -1.6
VPS13C-203ENST00000395896 ACIN1Q9UKV3 1341 aaKnown RBP5.05□□□□□ -1.6
VPS13C-203ENST00000395896 PEG3Q9GZU2 1588 aa5.04□□□□□ -1.6
VPS13C-203ENST00000395896 ABCC8Q09428 1581 aa5.04□□□□□ -1.6
VPS13C-203ENST00000395896 KIF27Q86VH2 1401 aa5.04□□□□□ -1.6
VPS13C-203ENST00000395896 ATAD2BQ9ULI0 1458 aa5.04□□□□□ -1.6
VPS13C-203ENST00000395896 HMGXB3Q12766 1538 aa5.03□□□□□ -1.6
VPS13C-203ENST00000395896 NCAPD3P42695 1498 aa5.03□□□□□ -1.6
VPS13C-203ENST00000395896 CEP164Q9UPV0 1460 aa5.03□□□□□ -1.6
VPS13C-203ENST00000395896 CCER1Q8TC90 406 aaPredicted RBP5.02□□□□□ -1.61
VPS13C-203ENST00000395896 EHMT2Q96KQ7 1210 aa5.02□□□□□ -1.61
VPS13C-203ENST00000395896 PDS5BQ9NTI5 1447 aa5.02□□□□□ -1.61
VPS13C-203ENST00000395896 EIF4G1Q04637 1599 aaKnown RBP5.02□□□□□ -1.61
VPS13C-203ENST00000395896 GOLGA3Q08378 1498 aa5.02□□□□□ -1.61
VPS13C-203ENST00000395896 CCDC88BA6NC98 1476 aa5.01□□□□□ -1.61
VPS13C-203ENST00000395896 LOC105371045A0A1W2PR82 267 aa5.01□□□□□ -1.61
VPS13C-203ENST00000395896 CDK11AQ9UQ88 783 aaPredicted RBP5□□□□□ -1.61
VPS13C-203ENST00000395896 CADPSQ9ULU8 1353 aa4.98□□□□□ -1.61
VPS13C-203ENST00000395896 BICRAQ9NZM4 1560 aa4.98□□□□□ -1.61
VPS13C-203ENST00000395896 PELP1Q8IZL8 1130 aaKnown RBP4.98□□□□□ -1.61
VPS13C-203ENST00000395896 TNIKQ9UKE5 1360 aa4.98□□□□□ -1.61
VPS13C-203ENST00000395896 ATP1B4Q9UN42 357 aaPredicted RBP4.97□□□□□ -1.61
VPS13C-203ENST00000395896 FHAD1B1AJZ9 1412 aa4.97□□□□□ -1.61
VPS13C-203ENST00000395896 CLIP1P30622 1438 aa4.96□□□□□ -1.62
VPS13C-203ENST00000395896 RANGAP1P46060 587 aaPredicted RBP4.95□□□□□ -1.62
VPS13C-203ENST00000395896 HRCP23327 699 aa4.94□□□□□ -1.62
VPS13C-203ENST00000395896 CFTRP13569 1480 aa4.94□□□□□ -1.62
VPS13C-203ENST00000395896 CEP162Q5TB80 1403 aa4.92□□□□□ -1.62
VPS13C-203ENST00000395896 CENPBP07199 599 aaPredicted RBP4.92□□□□□ -1.62
VPS13C-203ENST00000395896 CLSPNQ9HAW4 1339 aa4.92□□□□□ -1.62
VPS13C-203ENST00000395896 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP4.92□□□□□ -1.62
VPS13C-203ENST00000395896 HNRNPUL2Q1KMD3 747 aaKnown RBP4.92□□□□□ -1.62
VPS13C-203ENST00000395896 LAMC3Q9Y6N6 1575 aa4.91□□□□□ -1.62
VPS13C-203ENST00000395896 ERCC6Q03468 1493 aa4.91□□□□□ -1.62
VPS13C-203ENST00000395896 PRDM2Q13029 1718 aa4.9□□□□□ -1.63
VPS13C-203ENST00000395896 FMN1Q68DA7 1419 aa4.9□□□□□ -1.63
VPS13C-203ENST00000395896 ERICH3Q5RHP9 1530 aa4.89□□□□□ -1.63
VPS13C-203ENST00000395896 CC2D2AQ9P2K1 1620 aa4.89□□□□□ -1.63
VPS13C-203ENST00000395896 TOP2BQ02880 1626 aa4.89□□□□□ -1.63
VPS13C-203ENST00000395896 CUX2O14529 1486 aa4.89□□□□□ -1.63
VPS13C-203ENST00000395896 CHMP7Q8WUX9 453 aaPredicted RBP4.89□□□□□ -1.63
VPS13C-203ENST00000395896 VPS8Q8N3P4 1428 aa4.89□□□□□ -1.63
VPS13C-203ENST00000395896 FANCD2Q9BXW9 1451 aa4.88□□□□□ -1.63
VPS13C-203ENST00000395896 CARMIL1Q5VZK9 1371 aa4.88□□□□□ -1.63
VPS13C-203ENST00000395896 KIF21BO75037 1637 aa4.88□□□□□ -1.63
VPS13C-203ENST00000395896 MTUS2Q5JR59 1369 aa4.88□□□□□ -1.63
VPS13C-203ENST00000395896 SOGA1O94964 1423 aa4.87□□□□□ -1.63
VPS13C-203ENST00000395896 TTBK1Q5TCY1 1321 aaPredicted RBP4.87□□□□□ -1.63
VPS13C-203ENST00000395896 FBLN2P98095 1184 aa4.86□□□□□ -1.63
VPS13C-203ENST00000395896 RAPGEF2Q9Y4G8 1499 aa4.86□□□□□ -1.63
VPS13C-203ENST00000395896 CARMIL2Q6F5E8 1435 aa4.85□□□□□ -1.63
VPS13C-203ENST00000395896 DNMBPQ6XZF7 1577 aa4.84□□□□□ -1.63
VPS13C-203ENST00000395896 TIMELESSQ9UNS1 1208 aa4.84□□□□□ -1.64
VPS13C-203ENST00000395896 CUL7Q14999 1698 aa4.83□□□□□ -1.64
VPS13C-203ENST00000395896 BIVM-ERCC5R4GMW8 1640 aa4.83□□□□□ -1.64
VPS13C-203ENST00000395896 FAM50AQ14320 339 aaKnown RBP4.83□□□□□ -1.64
VPS13C-203ENST00000395896 NPM1P06748 294 aaKnown RBP eCLIP4.83□□□□□ -1.64
VPS13C-203ENST00000395896 FGD5Q6ZNL6 1462 aa4.82□□□□□ -1.64
VPS13C-203ENST00000395896 TSPY4P0CV99 314 aa4.82□□□□□ -1.64
VPS13C-203ENST00000395896 TSPY10P0CW01 314 aa4.82□□□□□ -1.64
VPS13C-203ENST00000395896 EFCAB5A4FU69 1503 aa4.81□□□□□ -1.64
VPS13C-203ENST00000395896 GAPVD1Q14C86 1478 aa4.81□□□□□ -1.64
VPS13C-203ENST00000395896 ITGAEP38570 1179 aa4.81□□□□□ -1.64
VPS13C-203ENST00000395896 SYNJ1O43426 1573 aa4.81□□□□□ -1.64
VPS13C-203ENST00000395896 PLEKHD1A6NEE1 506 aa4.81□□□□□ -1.64
VPS13C-203ENST00000395896 SLC24A1O60721 1099 aa4.81□□□□□ -1.64
VPS13C-203ENST00000395896 PPARGC1BQ86YN6 1023 aaKnown RBP4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms