RNA–Protein interactions for RNA: ENST00000393104.6

PDCD4-202, Transcript of programmed cell death 4, humanhuman

TSL 1 (best) BASIC

Gene PDCD4, Length 3,697 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDCD4-202ENST00000393104 NISCHQ9Y2I1 1504 aa24.18■■□□□ 1.46
PDCD4-202ENST00000393104 CCDC180Q9P1Z9 1646 aa21.39■■□□□ 1.01
PDCD4-202ENST00000393104 ZCCHC6Q5VYS8 1495 aaKnown RBP20.38■□□□□ 0.85
PDCD4-202ENST00000393104 DCAF1Q9Y4B6 1507 aa20.27■□□□□ 0.84
PDCD4-202ENST00000393104 MYO15BQ96JP2 1530 aa20.08■□□□□ 0.8
PDCD4-202ENST00000393104 SHROOM4Q9ULL8 1493 aa19.78■□□□□ 0.76
PDCD4-202ENST00000393104 NACADO15069 1562 aa19.77■□□□□ 0.75
PDCD4-202ENST00000393104 ABCC9O60706 1549 aa19.61■□□□□ 0.73
PDCD4-202ENST00000393104 RB1CC1Q8TDY2 1594 aa19.53■□□□□ 0.72
PDCD4-202ENST00000393104 HRCP23327 699 aa19.49■□□□□ 0.71
PDCD4-202ENST00000393104 SUPT5HO00267 1087 aaKnown RBP19.47■□□□□ 0.71
PDCD4-202ENST00000393104 CHIC1Q5VXU3 224 aa19.37■□□□□ 0.69
PDCD4-202ENST00000393104 SCRIBQ14160 1630 aa19.23■□□□□ 0.67
PDCD4-202ENST00000393104 UNC13AQ9UPW8 1703 aa19.22■□□□□ 0.67
PDCD4-202ENST00000393104 DCAF8L2P0C7V8 631 aa19.18■□□□□ 0.66
PDCD4-202ENST00000393104 PPARGC1BQ86YN6 1023 aaKnown RBP19.16■□□□□ 0.66
PDCD4-202ENST00000393104 PCGF6Q9BYE7 350 aa19.07■□□□□ 0.64
PDCD4-202ENST00000393104 BICRAQ9NZM4 1560 aa18.95■□□□□ 0.62
PDCD4-202ENST00000393104 LOC105371045A0A1W2PR82 267 aa18.84■□□□□ 0.61
PDCD4-202ENST00000393104 BAZ1AQ9NRL2 1556 aaPredicted RBP18.71■□□□□ 0.58
PDCD4-202ENST00000393104 RSF1Q96T23 1441 aaPredicted RBP18.64■□□□□ 0.57
PDCD4-202ENST00000393104 SMARCA4P51532 1647 aa18.64■□□□□ 0.57
PDCD4-202ENST00000393104 PEG3Q9GZU2 1588 aa18.59■□□□□ 0.57
PDCD4-202ENST00000393104 CECR2Q9BXF3 1484 aa18.58■□□□□ 0.57
PDCD4-202ENST00000393104 MROH2BQ7Z745 1585 aa18.57■□□□□ 0.56
PDCD4-202ENST00000393104 TRIM26Q12899 539 aaPredicted RBP18.56■□□□□ 0.56
PDCD4-202ENST00000393104 WIZO95785 1651 aa18.44■□□□□ 0.54
PDCD4-202ENST00000393104 TOP2AP11388 1531 aaKnown RBP18.4■□□□□ 0.54
PDCD4-202ENST00000393104 SCAF1Q9H7N4 1312 aaKnown RBP18.38■□□□□ 0.53
PDCD4-202ENST00000393104 SMARCA2P51531 1590 aa18.33■□□□□ 0.53
PDCD4-202ENST00000393104 EIF4G1Q04637 1599 aaKnown RBP18.3■□□□□ 0.52
PDCD4-202ENST00000393104 PABPN1Q86U42 306 aaKnown RBP eCLIP18.29■□□□□ 0.52
PDCD4-202ENST00000393104 HMGXB3Q12766 1538 aa18.25■□□□□ 0.51
PDCD4-202ENST00000393104 ATAD2BQ9ULI0 1458 aa18.22■□□□□ 0.51
PDCD4-202ENST00000393104 NCAPD3P42695 1498 aa18.15■□□□□ 0.5
PDCD4-202ENST00000393104 ZEB1P37275 1124 aaPredicted RBP18.13■□□□□ 0.49
PDCD4-202ENST00000393104 BAZ1BQ9UIG0 1483 aaKnown RBP18.07■□□□□ 0.48
PDCD4-202ENST00000393104 CCDC88BA6NC98 1476 aa18.03■□□□□ 0.48
PDCD4-202ENST00000393104 TRIM41Q8WV44 630 aa18.03■□□□□ 0.48
PDCD4-202ENST00000393104 PELP1Q8IZL8 1130 aaKnown RBP18.01■□□□□ 0.47
PDCD4-202ENST00000393104 CC2D2AQ9P2K1 1620 aa17.99■□□□□ 0.47
PDCD4-202ENST00000393104 FAM9AQ8IZU1 332 aaPredicted RBP17.95■□□□□ 0.46
PDCD4-202ENST00000393104 PRDM2Q13029 1718 aa17.94■□□□□ 0.46
PDCD4-202ENST00000393104 NEUROD1Q13562 356 aa17.91■□□□□ 0.46
PDCD4-202ENST00000393104 ACIN1Q9UKV3 1341 aaKnown RBP17.84■□□□□ 0.45
PDCD4-202ENST00000393104 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.81■□□□□ 0.44
PDCD4-202ENST00000393104 EHMT2Q96KQ7 1210 aa17.79■□□□□ 0.44
PDCD4-202ENST00000393104 WRNQ14191 1432 aaPredicted RBP eCLIP17.74■□□□□ 0.43
PDCD4-202ENST00000393104 CFTRP13569 1480 aa17.72■□□□□ 0.43
PDCD4-202ENST00000393104 ABCC8Q09428 1581 aa17.66■□□□□ 0.42
PDCD4-202ENST00000393104 BIVM-ERCC5R4GMW8 1640 aa17.65■□□□□ 0.42
PDCD4-202ENST00000393104 GTF3C3Q9Y5Q9 886 aa17.63■□□□□ 0.41
PDCD4-202ENST00000393104 LAMC3Q9Y6N6 1575 aa17.6■□□□□ 0.41
PDCD4-202ENST00000393104 DIEXFQ68CQ4 756 aaKnown RBP17.59■□□□□ 0.41
PDCD4-202ENST00000393104 TOP2BQ02880 1626 aa17.57■□□□□ 0.4
PDCD4-202ENST00000393104 CCER1Q8TC90 406 aaPredicted RBP17.56■□□□□ 0.4
PDCD4-202ENST00000393104 CEP162Q5TB80 1403 aa17.55■□□□□ 0.4
PDCD4-202ENST00000393104 SOGA1O94964 1423 aa17.55■□□□□ 0.4
PDCD4-202ENST00000393104 RUSC2Q8N2Y8 1516 aa17.55■□□□□ 0.4
PDCD4-202ENST00000393104 CADPSQ9ULU8 1353 aa17.55■□□□□ 0.4
PDCD4-202ENST00000393104 SYNJ1O43426 1573 aa17.53■□□□□ 0.4
PDCD4-202ENST00000393104 TNIKQ9UKE5 1360 aa17.46■□□□□ 0.39
PDCD4-202ENST00000393104 EEA1Q15075 1411 aa17.45■□□□□ 0.38
PDCD4-202ENST00000393104 CUX1P39880 1505 aa17.41■□□□□ 0.38
PDCD4-202ENST00000393104 DNMBPQ6XZF7 1577 aa17.36■□□□□ 0.37
PDCD4-202ENST00000393104 ZNF316A6NFI3 1004 aaPredicted RBP17.35■□□□□ 0.37
PDCD4-202ENST00000393104 FANCD2Q9BXW9 1451 aa17.35■□□□□ 0.37
PDCD4-202ENST00000393104 TTBK1Q5TCY1 1321 aaPredicted RBP17.33■□□□□ 0.36
PDCD4-202ENST00000393104 MIER1Q8N108 512 aa17.32■□□□□ 0.36
PDCD4-202ENST00000393104 CENPBP07199 599 aaPredicted RBP17.31■□□□□ 0.36
PDCD4-202ENST00000393104 KIF21AQ7Z4S6 1674 aa17.3■□□□□ 0.36
PDCD4-202ENST00000393104 KIF21BO75037 1637 aa17.28■□□□□ 0.36
PDCD4-202ENST00000393104 PDS5BQ9NTI5 1447 aa17.28■□□□□ 0.36
PDCD4-202ENST00000393104 WDR97A6NE52 1622 aa17.27■□□□□ 0.36
PDCD4-202ENST00000393104 CEP164Q9UPV0 1460 aa17.27■□□□□ 0.36
PDCD4-202ENST00000393104 NESP48681 1621 aa17.26■□□□□ 0.35
PDCD4-202ENST00000393104 CSRNP3Q8WYN3 585 aa17.23■□□□□ 0.35
PDCD4-202ENST00000393104 GOLGA3Q08378 1498 aa17.22■□□□□ 0.35
PDCD4-202ENST00000393104 TOPBP1Q92547 1522 aa17.22■□□□□ 0.35
PDCD4-202ENST00000393104 URB2Q14146 1524 aaKnown RBP17.17■□□□□ 0.34
PDCD4-202ENST00000393104 DNAJC5BQ9UF47 199 aa17.16■□□□□ 0.34
PDCD4-202ENST00000393104 ERICH3Q5RHP9 1530 aa17.16■□□□□ 0.34
PDCD4-202ENST00000393104 FGD5Q6ZNL6 1462 aa17.16■□□□□ 0.34
PDCD4-202ENST00000393104 CLIP1P30622 1438 aa17.16■□□□□ 0.34
PDCD4-202ENST00000393104 WDR62O43379 1518 aa17.15■□□□□ 0.34
PDCD4-202ENST00000393104 ABCA10Q8WWZ4 1543 aa17.14■□□□□ 0.33
PDCD4-202ENST00000393104 YTHDC1Q96MU7 727 aaKnown RBP17.14■□□□□ 0.33
PDCD4-202ENST00000393104 MRC2Q9UBG0 1479 aa17.13■□□□□ 0.33
PDCD4-202ENST00000393104 THOC2Q8NI27 1593 aaKnown RBP17.11■□□□□ 0.33
PDCD4-202ENST00000393104 POLA1P09884 1462 aaPredicted RBP17.1■□□□□ 0.33
PDCD4-202ENST00000393104 ABCA5Q8WWZ7 1642 aa17.09■□□□□ 0.33
PDCD4-202ENST00000393104 VPS8Q8N3P4 1428 aa17.09■□□□□ 0.33
PDCD4-202ENST00000393104 TARBP1Q13395 1621 aaKnown RBP17.09■□□□□ 0.33
PDCD4-202ENST00000393104 MYT1Q01538 1121 aa17.09■□□□□ 0.33
PDCD4-202ENST00000393104 KIF27Q86VH2 1401 aa17.08■□□□□ 0.32
PDCD4-202ENST00000393104 PRXQ9BXM0 1461 aa17.07■□□□□ 0.32
PDCD4-202ENST00000393104 RAPGEF2Q9Y4G8 1499 aa17.07■□□□□ 0.32
PDCD4-202ENST00000393104 CUL7Q14999 1698 aa17.05■□□□□ 0.32
PDCD4-202ENST00000393104 HNRNPUL2Q1KMD3 747 aaKnown RBP17.03■□□□□ 0.32
PDCD4-202ENST00000393104 UBTFP17480 764 aaKnown RBP17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms