RNA–Protein interactions for RNA: ENST00000373387.8

GARNL3-202, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GARNL3, Length 3,800 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-202ENST00000373387 NISCHQ9Y2I1 1504 aa15.64■□□□□ 0.09
GARNL3-202ENST00000373387 CCDC180Q9P1Z9 1646 aa13.4□□□□□ -0.26
GARNL3-202ENST00000373387 ZCCHC6Q5VYS8 1495 aaKnown RBP13.31□□□□□ -0.28
GARNL3-202ENST00000373387 SHROOM4Q9ULL8 1493 aa13.08□□□□□ -0.32
GARNL3-202ENST00000373387 DCAF1Q9Y4B6 1507 aa12.96□□□□□ -0.33
GARNL3-202ENST00000373387 MYO15BQ96JP2 1530 aa12.86□□□□□ -0.35
GARNL3-202ENST00000373387 SUPT5HO00267 1087 aaKnown RBP12.82□□□□□ -0.36
GARNL3-202ENST00000373387 CHIC1Q5VXU3 224 aa12.72□□□□□ -0.37
GARNL3-202ENST00000373387 ABCC9O60706 1549 aa12.62□□□□□ -0.39
GARNL3-202ENST00000373387 HRCP23327 699 aa12.54□□□□□ -0.4
GARNL3-202ENST00000373387 DCAF8L2P0C7V8 631 aa12.39□□□□□ -0.43
GARNL3-202ENST00000373387 RSF1Q96T23 1441 aaPredicted RBP12.37□□□□□ -0.43
GARNL3-202ENST00000373387 SCRIBQ14160 1630 aa12.36□□□□□ -0.43
GARNL3-202ENST00000373387 RB1CC1Q8TDY2 1594 aa12.33□□□□□ -0.44
GARNL3-202ENST00000373387 PCGF6Q9BYE7 350 aa12.3□□□□□ -0.44
GARNL3-202ENST00000373387 LOC105371045A0A1W2PR82 267 aa12.25□□□□□ -0.45
GARNL3-202ENST00000373387 NACADO15069 1562 aa12.23□□□□□ -0.45
GARNL3-202ENST00000373387 EIF4G1Q04637 1599 aaKnown RBP12.2□□□□□ -0.46
GARNL3-202ENST00000373387 PPARGC1BQ86YN6 1023 aaKnown RBP12.16□□□□□ -0.46
GARNL3-202ENST00000373387 TRIM26Q12899 539 aaPredicted RBP12.14□□□□□ -0.47
GARNL3-202ENST00000373387 MROH2BQ7Z745 1585 aa12.14□□□□□ -0.47
GARNL3-202ENST00000373387 CECR2Q9BXF3 1484 aa12.12□□□□□ -0.47
GARNL3-202ENST00000373387 BAZ1AQ9NRL2 1556 aaPredicted RBP12.12□□□□□ -0.47
GARNL3-202ENST00000373387 WIZO95785 1651 aa12.12□□□□□ -0.47
GARNL3-202ENST00000373387 UNC13AQ9UPW8 1703 aa12.01□□□□□ -0.49
GARNL3-202ENST00000373387 TRIM41Q8WV44 630 aa11.99□□□□□ -0.49
GARNL3-202ENST00000373387 TOP2AP11388 1531 aaKnown RBP11.94□□□□□ -0.5
GARNL3-202ENST00000373387 SMARCA4P51532 1647 aa11.92□□□□□ -0.5
GARNL3-202ENST00000373387 ZEB1P37275 1124 aaPredicted RBP11.91□□□□□ -0.5
GARNL3-202ENST00000373387 SMARCA2P51531 1590 aa11.9□□□□□ -0.5
GARNL3-202ENST00000373387 WRNQ14191 1432 aaPredicted RBP eCLIP11.83□□□□□ -0.52
GARNL3-202ENST00000373387 CCDC88BA6NC98 1476 aa11.81□□□□□ -0.52
GARNL3-202ENST00000373387 ABCC8Q09428 1581 aa11.81□□□□□ -0.52
GARNL3-202ENST00000373387 PEG3Q9GZU2 1588 aa11.8□□□□□ -0.52
GARNL3-202ENST00000373387 FAM9AQ8IZU1 332 aaPredicted RBP11.78□□□□□ -0.52
GARNL3-202ENST00000373387 BICRAQ9NZM4 1560 aa11.75□□□□□ -0.53
GARNL3-202ENST00000373387 EEA1Q15075 1411 aa11.7□□□□□ -0.54
GARNL3-202ENST00000373387 TNIKQ9UKE5 1360 aa11.68□□□□□ -0.54
GARNL3-202ENST00000373387 CEP162Q5TB80 1403 aa11.68□□□□□ -0.54
GARNL3-202ENST00000373387 SOGA1O94964 1423 aa11.67□□□□□ -0.54
GARNL3-202ENST00000373387 KIF21BO75037 1637 aa11.65□□□□□ -0.54
GARNL3-202ENST00000373387 RUSC2Q8N2Y8 1516 aa11.64□□□□□ -0.55
GARNL3-202ENST00000373387 SCAF1Q9H7N4 1312 aaKnown RBP11.62□□□□□ -0.55
GARNL3-202ENST00000373387 SYNJ1O43426 1573 aa11.62□□□□□ -0.55
GARNL3-202ENST00000373387 GOLGA3Q08378 1498 aa11.59□□□□□ -0.55
GARNL3-202ENST00000373387 EHMT2Q96KQ7 1210 aa11.57□□□□□ -0.56
GARNL3-202ENST00000373387 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.54□□□□□ -0.56
GARNL3-202ENST00000373387 BIVM-ERCC5R4GMW8 1640 aa11.53□□□□□ -0.56
GARNL3-202ENST00000373387 BAZ1BQ9UIG0 1483 aaKnown RBP11.52□□□□□ -0.57
GARNL3-202ENST00000373387 CEP164Q9UPV0 1460 aa11.52□□□□□ -0.57
GARNL3-202ENST00000373387 CSRNP3Q8WYN3 585 aa11.52□□□□□ -0.57
GARNL3-202ENST00000373387 ATAD2BQ9ULI0 1458 aa11.51□□□□□ -0.57
GARNL3-202ENST00000373387 TOP2BQ02880 1626 aa11.5□□□□□ -0.57
GARNL3-202ENST00000373387 PELP1Q8IZL8 1130 aaKnown RBP11.48□□□□□ -0.57
GARNL3-202ENST00000373387 CCER1Q8TC90 406 aaPredicted RBP11.47□□□□□ -0.57
GARNL3-202ENST00000373387 ACIN1Q9UKV3 1341 aaKnown RBP11.44□□□□□ -0.58
GARNL3-202ENST00000373387 VPS8Q8N3P4 1428 aa11.43□□□□□ -0.58
GARNL3-202ENST00000373387 ERICH3Q5RHP9 1530 aa11.42□□□□□ -0.58
GARNL3-202ENST00000373387 CLIP1P30622 1438 aa11.42□□□□□ -0.58
GARNL3-202ENST00000373387 RAPGEF2Q9Y4G8 1499 aa11.41□□□□□ -0.58
GARNL3-202ENST00000373387 NEUROD1Q13562 356 aa11.41□□□□□ -0.58
GARNL3-202ENST00000373387 DIEXFQ68CQ4 756 aaKnown RBP11.39□□□□□ -0.59
GARNL3-202ENST00000373387 PRDM2Q13029 1718 aa11.38□□□□□ -0.59
GARNL3-202ENST00000373387 HMGXB3Q12766 1538 aa11.37□□□□□ -0.59
GARNL3-202ENST00000373387 PRXQ9BXM0 1461 aa11.37□□□□□ -0.59
GARNL3-202ENST00000373387 ARAP1Q96P48 1450 aa11.34□□□□□ -0.59
GARNL3-202ENST00000373387 UBTFP17480 764 aaKnown RBP11.33□□□□□ -0.6
GARNL3-202ENST00000373387 PABPN1Q86U42 306 aaKnown RBP eCLIP11.33□□□□□ -0.6
GARNL3-202ENST00000373387 ZNF316A6NFI3 1004 aaPredicted RBP11.32□□□□□ -0.6
GARNL3-202ENST00000373387 CUX1P39880 1505 aa11.31□□□□□ -0.6
GARNL3-202ENST00000373387 CUX2O14529 1486 aa11.29□□□□□ -0.6
GARNL3-202ENST00000373387 NCAPD3P42695 1498 aa11.29□□□□□ -0.6
GARNL3-202ENST00000373387 TTBK1Q5TCY1 1321 aaPredicted RBP11.26□□□□□ -0.61
GARNL3-202ENST00000373387 RRBP1Q9P2E9 1410 aaKnown RBP11.25□□□□□ -0.61
GARNL3-202ENST00000373387 GTF3C3Q9Y5Q9 886 aa11.24□□□□□ -0.61
GARNL3-202ENST00000373387 CENPBP07199 599 aaPredicted RBP11.24□□□□□ -0.61
GARNL3-202ENST00000373387 CFTRP13569 1480 aa11.23□□□□□ -0.61
GARNL3-202ENST00000373387 CLSPNQ9HAW4 1339 aa11.23□□□□□ -0.61
GARNL3-202ENST00000373387 DHX57Q6P158 1386 aaKnown RBP11.22□□□□□ -0.61
GARNL3-202ENST00000373387 ARHGAP35Q9NRY4 1499 aa11.19□□□□□ -0.62
GARNL3-202ENST00000373387 MAP3K1Q13233 1512 aa11.19□□□□□ -0.62
GARNL3-202ENST00000373387 MIER1Q8N108 512 aa11.16□□□□□ -0.62
GARNL3-202ENST00000373387 HNRNPUL2Q1KMD3 747 aaKnown RBP11.16□□□□□ -0.62
GARNL3-202ENST00000373387 CFAP43Q8NDM7 1665 aa11.15□□□□□ -0.62
GARNL3-202ENST00000373387 KIF27Q86VH2 1401 aa11.15□□□□□ -0.62
GARNL3-202ENST00000373387 TIAM1Q13009 1591 aa11.13□□□□□ -0.63
GARNL3-202ENST00000373387 KANK4Q5T7N3 995 aaPredicted RBP11.12□□□□□ -0.63
GARNL3-202ENST00000373387 MAPKBP1O60336 1514 aa11.12□□□□□ -0.63
GARNL3-202ENST00000373387 CCNB3Q8WWL7 1395 aa11.06□□□□□ -0.64
GARNL3-202ENST00000373387 APLP2Q06481 763 aa11.05□□□□□ -0.64
GARNL3-202ENST00000373387 IGF1RP08069 1367 aa11.05□□□□□ -0.64
GARNL3-202ENST00000373387 PCF11O94913 1555 aaKnown RBP11.03□□□□□ -0.64
GARNL3-202ENST00000373387 LRRC9Q6ZRR7 1453 aa11.03□□□□□ -0.64
GARNL3-202ENST00000373387 WDR97A6NE52 1622 aa11.02□□□□□ -0.64
GARNL3-202ENST00000373387 CTTNBP2Q8WZ74 1663 aa11.02□□□□□ -0.64
GARNL3-202ENST00000373387 FGD5Q6ZNL6 1462 aa11.02□□□□□ -0.65
GARNL3-202ENST00000373387 CC2D2AQ9P2K1 1620 aa11□□□□□ -0.65
GARNL3-202ENST00000373387 LRRIQ1Q96JM4 1722 aa11□□□□□ -0.65
GARNL3-202ENST00000373387 YTHDC1Q96MU7 727 aaKnown RBP10.98□□□□□ -0.65
GARNL3-202ENST00000373387 CADPSQ9ULU8 1353 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms