RNA–Protein interactions for RNA: ENST00000371447.3

PDE6C-201, Transcript of phosphodiesterase 6C, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDE6C, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDE6C-201ENST00000371447 NISCHQ9Y2I1 1504 aa24.32■■□□□ 1.48
PDE6C-201ENST00000371447 SHROOM4Q9ULL8 1493 aa21.35■■□□□ 1.01
PDE6C-201ENST00000371447 DCAF8L2P0C7V8 631 aa21.25■□□□□ 0.99
PDE6C-201ENST00000371447 SUPT5HO00267 1087 aaKnown RBP20.88■□□□□ 0.93
PDE6C-201ENST00000371447 ZCCHC6Q5VYS8 1495 aaKnown RBP20.44■□□□□ 0.86
PDE6C-201ENST00000371447 CCDC180Q9P1Z9 1646 aa20.41■□□□□ 0.86
PDE6C-201ENST00000371447 ABCC9O60706 1549 aa19.88■□□□□ 0.77
PDE6C-201ENST00000371447 CHIC1Q5VXU3 224 aa19.82■□□□□ 0.76
PDE6C-201ENST00000371447 SCRIBQ14160 1630 aa19.66■□□□□ 0.74
PDE6C-201ENST00000371447 DCAF1Q9Y4B6 1507 aa19.61■□□□□ 0.73
PDE6C-201ENST00000371447 MYO15BQ96JP2 1530 aa19.58■□□□□ 0.73
PDE6C-201ENST00000371447 EHMT2Q96KQ7 1210 aa19.55■□□□□ 0.72
PDE6C-201ENST00000371447 LOC105371045A0A1W2PR82 267 aa19.52■□□□□ 0.72
PDE6C-201ENST00000371447 FAM9AQ8IZU1 332 aaPredicted RBP19.43■□□□□ 0.7
PDE6C-201ENST00000371447 RSF1Q96T23 1441 aaPredicted RBP19.31■□□□□ 0.68
PDE6C-201ENST00000371447 PCGF6Q9BYE7 350 aa19.29■□□□□ 0.68
PDE6C-201ENST00000371447 TRIM41Q8WV44 630 aa19.27■□□□□ 0.67
PDE6C-201ENST00000371447 CECR2Q9BXF3 1484 aa19.24■□□□□ 0.67
PDE6C-201ENST00000371447 PABPN1Q86U42 306 aaKnown RBP eCLIP19.23■□□□□ 0.67
PDE6C-201ENST00000371447 NACADO15069 1562 aa19.12■□□□□ 0.65
PDE6C-201ENST00000371447 RB1CC1Q8TDY2 1594 aa19.06■□□□□ 0.64
PDE6C-201ENST00000371447 MROH2BQ7Z745 1585 aa19.04■□□□□ 0.64
PDE6C-201ENST00000371447 PPARGC1BQ86YN6 1023 aaKnown RBP18.93■□□□□ 0.62
PDE6C-201ENST00000371447 WIZO95785 1651 aa18.89■□□□□ 0.62
PDE6C-201ENST00000371447 HRCP23327 699 aa18.8■□□□□ 0.6
PDE6C-201ENST00000371447 TTBK1Q5TCY1 1321 aaPredicted RBP18.79■□□□□ 0.6
PDE6C-201ENST00000371447 BAZ1AQ9NRL2 1556 aaPredicted RBP18.67■□□□□ 0.58
PDE6C-201ENST00000371447 TRIM26Q12899 539 aaPredicted RBP18.66■□□□□ 0.58
PDE6C-201ENST00000371447 RANGAP1P46060 587 aaPredicted RBP18.57■□□□□ 0.56
PDE6C-201ENST00000371447 CCDC88BA6NC98 1476 aa18.56■□□□□ 0.56
PDE6C-201ENST00000371447 ABCC8Q09428 1581 aa18.55■□□□□ 0.56
PDE6C-201ENST00000371447 SMARCA4P51532 1647 aa18.52■□□□□ 0.56
PDE6C-201ENST00000371447 UNC13AQ9UPW8 1703 aa18.51■□□□□ 0.55
PDE6C-201ENST00000371447 UBTFP17480 764 aaKnown RBP18.51■□□□□ 0.55
PDE6C-201ENST00000371447 TOP2AP11388 1531 aaKnown RBP18.43■□□□□ 0.54
PDE6C-201ENST00000371447 BICRAQ9NZM4 1560 aa18.42■□□□□ 0.54
PDE6C-201ENST00000371447 SOGA1O94964 1423 aa18.4■□□□□ 0.54
PDE6C-201ENST00000371447 SMARCA2P51531 1590 aa18.37■□□□□ 0.53
PDE6C-201ENST00000371447 RUSC2Q8N2Y8 1516 aa18.32■□□□□ 0.52
PDE6C-201ENST00000371447 CSRNP3Q8WYN3 585 aa18.32■□□□□ 0.52
PDE6C-201ENST00000371447 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.27■□□□□ 0.52
PDE6C-201ENST00000371447 BAZ1BQ9UIG0 1483 aaKnown RBP18.25■□□□□ 0.51
PDE6C-201ENST00000371447 ATAD2BQ9ULI0 1458 aa18.23■□□□□ 0.51
PDE6C-201ENST00000371447 WRNQ14191 1432 aaPredicted RBP eCLIP18.21■□□□□ 0.51
PDE6C-201ENST00000371447 EIF4G1Q04637 1599 aaKnown RBP18.18■□□□□ 0.5
PDE6C-201ENST00000371447 CCER1Q8TC90 406 aaPredicted RBP18.16■□□□□ 0.5
PDE6C-201ENST00000371447 CEP162Q5TB80 1403 aa18.13■□□□□ 0.49
PDE6C-201ENST00000371447 HNRNPUL2Q1KMD3 747 aaKnown RBP18.03■□□□□ 0.48
PDE6C-201ENST00000371447 ZEB1P37275 1124 aaPredicted RBP18.01■□□□□ 0.47
PDE6C-201ENST00000371447 SYNJ1O43426 1573 aa18■□□□□ 0.47
PDE6C-201ENST00000371447 APLP2Q06481 763 aa18■□□□□ 0.47
PDE6C-201ENST00000371447 TNIKQ9UKE5 1360 aa18■□□□□ 0.47
PDE6C-201ENST00000371447 GOLGA3Q08378 1498 aa17.94■□□□□ 0.46
PDE6C-201ENST00000371447 PEG3Q9GZU2 1588 aa17.93■□□□□ 0.46
PDE6C-201ENST00000371447 EEA1Q15075 1411 aa17.9■□□□□ 0.46
PDE6C-201ENST00000371447 RAPGEF2Q9Y4G8 1499 aa17.89■□□□□ 0.45
PDE6C-201ENST00000371447 CLIP1P30622 1438 aa17.88■□□□□ 0.45
PDE6C-201ENST00000371447 CEP164Q9UPV0 1460 aa17.83■□□□□ 0.45
PDE6C-201ENST00000371447 ATP1B4Q9UN42 357 aaPredicted RBP17.82■□□□□ 0.44
PDE6C-201ENST00000371447 NCAPD3P42695 1498 aa17.81■□□□□ 0.44
PDE6C-201ENST00000371447 ITGAEP38570 1179 aa17.79■□□□□ 0.44
PDE6C-201ENST00000371447 P3H3Q8IVL6 736 aa17.78■□□□□ 0.44
PDE6C-201ENST00000371447 DNAJC5BQ9UF47 199 aa17.74■□□□□ 0.43
PDE6C-201ENST00000371447 CUX1P39880 1505 aa17.69■□□□□ 0.42
PDE6C-201ENST00000371447 KANK4Q5T7N3 995 aaPredicted RBP17.68■□□□□ 0.42
PDE6C-201ENST00000371447 KIF27Q86VH2 1401 aa17.66■□□□□ 0.42
PDE6C-201ENST00000371447 TOP2BQ02880 1626 aa17.65■□□□□ 0.42
PDE6C-201ENST00000371447 CFTRP13569 1480 aa17.64■□□□□ 0.42
PDE6C-201ENST00000371447 CADPSQ9ULU8 1353 aa17.64■□□□□ 0.41
PDE6C-201ENST00000371447 HMGXB3Q12766 1538 aa17.64■□□□□ 0.41
PDE6C-201ENST00000371447 CUX2O14529 1486 aa17.63■□□□□ 0.41
PDE6C-201ENST00000371447 VPS8Q8N3P4 1428 aa17.63■□□□□ 0.41
PDE6C-201ENST00000371447 CC2D2AQ9P2K1 1620 aa17.59■□□□□ 0.41
PDE6C-201ENST00000371447 KIF21BO75037 1637 aa17.58■□□□□ 0.41
PDE6C-201ENST00000371447 NESP48681 1621 aa17.58■□□□□ 0.4
PDE6C-201ENST00000371447 DIEXFQ68CQ4 756 aaKnown RBP17.56■□□□□ 0.4
PDE6C-201ENST00000371447 PRXQ9BXM0 1461 aa17.52■□□□□ 0.4
PDE6C-201ENST00000371447 IGF1RP08069 1367 aa17.52■□□□□ 0.39
PDE6C-201ENST00000371447 CARMIL1Q5VZK9 1371 aa17.5■□□□□ 0.39
PDE6C-201ENST00000371447 FGD5Q6ZNL6 1462 aa17.5■□□□□ 0.39
PDE6C-201ENST00000371447 RAD54L2Q9Y4B4 1467 aa17.49■□□□□ 0.39
PDE6C-201ENST00000371447 ARAP1Q96P48 1450 aa17.49■□□□□ 0.39
PDE6C-201ENST00000371447 FANCD2Q9BXW9 1451 aa17.48■□□□□ 0.39
PDE6C-201ENST00000371447 YTHDC1Q96MU7 727 aaKnown RBP17.48■□□□□ 0.39
PDE6C-201ENST00000371447 BIVM-ERCC5R4GMW8 1640 aa17.47■□□□□ 0.39
PDE6C-201ENST00000371447 FAM50AQ14320 339 aaKnown RBP17.46■□□□□ 0.39
PDE6C-201ENST00000371447 PELP1Q8IZL8 1130 aaKnown RBP17.45■□□□□ 0.38
PDE6C-201ENST00000371447 ARID3CA6NKF2 412 aa17.44■□□□□ 0.38
PDE6C-201ENST00000371447 TDRD9Q8NDG6 1382 aaKnown RBP17.43■□□□□ 0.38
PDE6C-201ENST00000371447 ZNF316A6NFI3 1004 aaPredicted RBP17.39■□□□□ 0.37
PDE6C-201ENST00000371447 ARHGAP35Q9NRY4 1499 aa17.37■□□□□ 0.37
PDE6C-201ENST00000371447 ERICH3Q5RHP9 1530 aa17.35■□□□□ 0.37
PDE6C-201ENST00000371447 FHOD3Q2V2M9 1422 aa17.31■□□□□ 0.36
PDE6C-201ENST00000371447 SCAF1Q9H7N4 1312 aaKnown RBP17.29■□□□□ 0.36
PDE6C-201ENST00000371447 POLA1P09884 1462 aaPredicted RBP17.28■□□□□ 0.36
PDE6C-201ENST00000371447 NEUROD1Q13562 356 aa17.28■□□□□ 0.36
PDE6C-201ENST00000371447 TOPBP1Q92547 1522 aa17.27■□□□□ 0.35
PDE6C-201ENST00000371447 CCNB3Q8WWL7 1395 aa17.26■□□□□ 0.35
PDE6C-201ENST00000371447 MIER1Q8N108 512 aa17.25■□□□□ 0.35
PDE6C-201ENST00000371447 FBLN2P98095 1184 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms