RNA–Protein interactions for RNA: ENST00000359366.9

ATXN3-202, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 2,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-202ENST00000359366 AEBP2Q6ZN18 517 aaPredicted RBP13.9□□□□□ -0.18
ATXN3-202ENST00000359366 CHIC1Q5VXU3 224 aa13.13□□□□□ -0.31
ATXN3-202ENST00000359366 POTEDQ86YR6 584 aa12.16□□□□□ -0.46
ATXN3-202ENST00000359366 SENP3Q9H4L4 574 aaPredicted RBP12.13□□□□□ -0.47
ATXN3-202ENST00000359366 PHF23Q9BUL5 403 aaPredicted RBP11.79□□□□□ -0.52
ATXN3-202ENST00000359366 FOXD1Q16676 465 aa11.32□□□□□ -0.6
ATXN3-202ENST00000359366 NISCHQ9Y2I1 1504 aa11.21□□□□□ -0.62
ATXN3-202ENST00000359366 MSH5O43196 834 aa11.04□□□□□ -0.64
ATXN3-202ENST00000359366 PIAS4Q8N2W9 510 aaPredicted RBP10.43□□□□□ -0.74
ATXN3-202ENST00000359366 CACNB1Q02641 598 aaPredicted RBP9.98□□□□□ -0.81
ATXN3-202ENST00000359366 PPP6R1Q9UPN7 881 aa9.87□□□□□ -0.83
ATXN3-202ENST00000359366 ADRA2BP18089 450 aa9.82□□□□□ -0.84
ATXN3-202ENST00000359366 CCDC180Q9P1Z9 1646 aa9.63□□□□□ -0.87
ATXN3-202ENST00000359366 PLPPR3Q6T4P5 718 aa9.61□□□□□ -0.87
ATXN3-202ENST00000359366 DCAF8L2P0C7V8 631 aa9.49□□□□□ -0.89
ATXN3-202ENST00000359366 SHROOM4Q9ULL8 1493 aa9.45□□□□□ -0.9
ATXN3-202ENST00000359366 DMRT2Q9Y5R5 561 aa9.45□□□□□ -0.9
ATXN3-202ENST00000359366 ZCCHC6Q5VYS8 1495 aaKnown RBP9.41□□□□□ -0.9
ATXN3-202ENST00000359366 POTEHQ6S545 545 aa9.39□□□□□ -0.91
ATXN3-202ENST00000359366 ABCC9O60706 1549 aa9.28□□□□□ -0.92
ATXN3-202ENST00000359366 RNF39Q9H2S5 420 aa9.27□□□□□ -0.93
ATXN3-202ENST00000359366 MAPK8IP2Q13387 824 aaPredicted RBP9.26□□□□□ -0.93
ATXN3-202ENST00000359366 C1QBPQ07021 282 aaKnown RBP9.15□□□□□ -0.95
ATXN3-202ENST00000359366 SCAF1Q9H7N4 1312 aaKnown RBP9.14□□□□□ -0.95
ATXN3-202ENST00000359366 DCAF8L1A6NGE4 600 aa9.14□□□□□ -0.95
ATXN3-202ENST00000359366 DCAF1Q9Y4B6 1507 aa9.13□□□□□ -0.95
ATXN3-202ENST00000359366 SUPT5HO00267 1087 aaKnown RBP9.11□□□□□ -0.95
ATXN3-202ENST00000359366 SCRIBQ14160 1630 aa9.07□□□□□ -0.96
ATXN3-202ENST00000359366 NACADO15069 1562 aa8.98□□□□□ -0.97
ATXN3-202ENST00000359366 MYO15BQ96JP2 1530 aa8.97□□□□□ -0.97
ATXN3-202ENST00000359366 RB1CC1Q8TDY2 1594 aa8.91□□□□□ -0.98
ATXN3-202ENST00000359366 PABPN1Q86U42 306 aaKnown RBP eCLIP8.83□□□□□ -1
ATXN3-202ENST00000359366 UNC13AQ9UPW8 1703 aa8.82□□□□□ -1
ATXN3-202ENST00000359366 CECR2Q9BXF3 1484 aa8.81□□□□□ -1
ATXN3-202ENST00000359366 RSF1Q96T23 1441 aaPredicted RBP8.77□□□□□ -1.01
ATXN3-202ENST00000359366 HOXD11P31277 338 aaPredicted RBP8.75□□□□□ -1.01
ATXN3-202ENST00000359366 MROH2BQ7Z745 1585 aa8.73□□□□□ -1.01
ATXN3-202ENST00000359366 BICRAQ9NZM4 1560 aa8.71□□□□□ -1.02
ATXN3-202ENST00000359366 DNAJC5BQ9UF47 199 aa8.68□□□□□ -1.02
ATXN3-202ENST00000359366 WIZO95785 1651 aa8.68□□□□□ -1.02
ATXN3-202ENST00000359366 BAZ1AQ9NRL2 1556 aaPredicted RBP8.61□□□□□ -1.03
ATXN3-202ENST00000359366 SMARCA4P51532 1647 aa8.61□□□□□ -1.03
ATXN3-202ENST00000359366 TOP2AP11388 1531 aaKnown RBP8.49□□□□□ -1.05
ATXN3-202ENST00000359366 RNF216Q9NWF9 866 aaPredicted RBP8.49□□□□□ -1.05
ATXN3-202ENST00000359366 CCDC88BA6NC98 1476 aa8.48□□□□□ -1.05
ATXN3-202ENST00000359366 TRIM41Q8WV44 630 aa8.46□□□□□ -1.05
ATXN3-202ENST00000359366 SMARCA2P51531 1590 aa8.45□□□□□ -1.06
ATXN3-202ENST00000359366 ATAD2BQ9ULI0 1458 aa8.45□□□□□ -1.06
ATXN3-202ENST00000359366 LOC105371045A0A1W2PR82 267 aa8.45□□□□□ -1.06
ATXN3-202ENST00000359366 FAM9AQ8IZU1 332 aaPredicted RBP8.45□□□□□ -1.06
ATXN3-202ENST00000359366 EHMT2Q96KQ7 1210 aa8.45□□□□□ -1.06
ATXN3-202ENST00000359366 EIF4G1Q04637 1599 aaKnown RBP8.43□□□□□ -1.06
ATXN3-202ENST00000359366 PELP1Q8IZL8 1130 aaKnown RBP8.43□□□□□ -1.06
ATXN3-202ENST00000359366 BAZ1BQ9UIG0 1483 aaKnown RBP8.42□□□□□ -1.06
ATXN3-202ENST00000359366 MYT1Q01538 1121 aa8.42□□□□□ -1.06
ATXN3-202ENST00000359366 PEG3Q9GZU2 1588 aa8.41□□□□□ -1.06
ATXN3-202ENST00000359366 SP7Q8TDD2 431 aaPredicted RBP8.4□□□□□ -1.06
ATXN3-202ENST00000359366 ABCC8Q09428 1581 aa8.4□□□□□ -1.07
ATXN3-202ENST00000359366 DSG3P32926 999 aa8.39□□□□□ -1.07
ATXN3-202ENST00000359366 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.39□□□□□ -1.07
ATXN3-202ENST00000359366 CNKSR2Q8WXI2 1034 aa8.35□□□□□ -1.07
ATXN3-202ENST00000359366 CC2D2AQ9P2K1 1620 aa8.32□□□□□ -1.08
ATXN3-202ENST00000359366 NCAPD3P42695 1498 aa8.32□□□□□ -1.08
ATXN3-202ENST00000359366 HMGXB3Q12766 1538 aa8.28□□□□□ -1.08
ATXN3-202ENST00000359366 CAPN15O75808 1086 aa8.28□□□□□ -1.08
ATXN3-202ENST00000359366 PPP4R3CPQ6ZMV5 832 aa8.26□□□□□ -1.09
ATXN3-202ENST00000359366 SOGA1O94964 1423 aa8.25□□□□□ -1.09
ATXN3-202ENST00000359366 WRNQ14191 1432 aaPredicted RBP eCLIP8.24□□□□□ -1.09
ATXN3-202ENST00000359366 RUSC2Q8N2Y8 1516 aa8.24□□□□□ -1.09
ATXN3-202ENST00000359366 SYNJ1O43426 1573 aa8.24□□□□□ -1.09
ATXN3-202ENST00000359366 CHRDL2Q6WN34 429 aa8.22□□□□□ -1.09
ATXN3-202ENST00000359366 CFTRP13569 1480 aa8.18□□□□□ -1.1
ATXN3-202ENST00000359366 NESP48681 1621 aa8.18□□□□□ -1.1
ATXN3-202ENST00000359366 TTBK1Q5TCY1 1321 aaPredicted RBP8.17□□□□□ -1.1
ATXN3-202ENST00000359366 SPINK5Q9NQ38 1064 aaPredicted RBP8.16□□□□□ -1.1
ATXN3-202ENST00000359366 CADPSQ9ULU8 1353 aa8.15□□□□□ -1.1
ATXN3-202ENST00000359366 CUX1P39880 1505 aa8.15□□□□□ -1.11
ATXN3-202ENST00000359366 PPARGC1BQ86YN6 1023 aaKnown RBP8.14□□□□□ -1.11
ATXN3-202ENST00000359366 CSRNP3Q8WYN3 585 aa8.14□□□□□ -1.11
ATXN3-202ENST00000359366 RBM42Q9BTD8 480 aaKnown RBP8.13□□□□□ -1.11
ATXN3-202ENST00000359366 PCGF6Q9BYE7 350 aa8.13□□□□□ -1.11
ATXN3-202ENST00000359366 RANGAP1P46060 587 aaPredicted RBP8.13□□□□□ -1.11
ATXN3-202ENST00000359366 TOP2BQ02880 1626 aa8.12□□□□□ -1.11
ATXN3-202ENST00000359366 UBTFP17480 764 aaKnown RBP8.12□□□□□ -1.11
ATXN3-202ENST00000359366 PLSCR2Q9NRY7 297 aa8.12□□□□□ -1.11
ATXN3-202ENST00000359366 BIVM-ERCC5R4GMW8 1640 aa8.09□□□□□ -1.11
ATXN3-202ENST00000359366 PRDM2Q13029 1718 aa8.09□□□□□ -1.11
ATXN3-202ENST00000359366 FANCD2Q9BXW9 1451 aa8.09□□□□□ -1.11
ATXN3-202ENST00000359366 EEA1Q15075 1411 aa8.05□□□□□ -1.12
ATXN3-202ENST00000359366 RAPGEF2Q9Y4G8 1499 aa8.05□□□□□ -1.12
ATXN3-202ENST00000359366 FGD5Q6ZNL6 1462 aa8.05□□□□□ -1.12
ATXN3-202ENST00000359366 CEP162Q5TB80 1403 aa8.05□□□□□ -1.12
ATXN3-202ENST00000359366 U3KPZ7 1027 aaPredicted RBP8.04□□□□□ -1.12
ATXN3-202ENST00000359366 GOLGA3Q08378 1498 aa8.03□□□□□ -1.12
ATXN3-202ENST00000359366 RAD54L2Q9Y4B4 1467 aa8.03□□□□□ -1.12
ATXN3-202ENST00000359366 CUX2O14529 1486 aa8.03□□□□□ -1.12
ATXN3-202ENST00000359366 TNIKQ9UKE5 1360 aa8.02□□□□□ -1.13
ATXN3-202ENST00000359366 KIF21AQ7Z4S6 1674 aa8.01□□□□□ -1.13
ATXN3-202ENST00000359366 CEP164Q9UPV0 1460 aa8.01□□□□□ -1.13
ATXN3-202ENST00000359366 LAMC3Q9Y6N6 1575 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 161 ms