RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 NISCHQ9Y2I1 1504 aa5.87□□□□□ -1.47
CSMD3-202ENST00000339701 CCDC180Q9P1Z9 1646 aa5.8□□□□□ -1.48
CSMD3-202ENST00000339701 DCAF8L2P0C7V8 631 aa5.72□□□□□ -1.49
CSMD3-202ENST00000339701 FAM9AQ8IZU1 332 aaPredicted RBP5.59□□□□□ -1.51
CSMD3-202ENST00000339701 PELP1Q8IZL8 1130 aaKnown RBP5.45□□□□□ -1.54
CSMD3-202ENST00000339701 MYT1Q01538 1121 aa5.42□□□□□ -1.54
CSMD3-202ENST00000339701 MYO15BQ96JP2 1530 aa5.42□□□□□ -1.54
CSMD3-202ENST00000339701 SHROOM4Q9ULL8 1493 aa5.37□□□□□ -1.55
CSMD3-202ENST00000339701 DCAF1Q9Y4B6 1507 aa5.34□□□□□ -1.55
CSMD3-202ENST00000339701 BAZ1BQ9UIG0 1483 aaKnown RBP5.25□□□□□ -1.57
CSMD3-202ENST00000339701 NACADO15069 1562 aa5.18□□□□□ -1.58
CSMD3-202ENST00000339701 YTHDC1Q96MU7 727 aaKnown RBP5.18□□□□□ -1.58
CSMD3-202ENST00000339701 CCER1Q8TC90 406 aaPredicted RBP5.15□□□□□ -1.58
CSMD3-202ENST00000339701 MYT1LQ9UL68 1186 aa5.08□□□□□ -1.6
CSMD3-202ENST00000339701 RB1CC1Q8TDY2 1594 aa5.08□□□□□ -1.6
CSMD3-202ENST00000339701 ACIN1Q9UKV3 1341 aaKnown RBP5.05□□□□□ -1.6
CSMD3-202ENST00000339701 AEBP2Q6ZN18 517 aaPredicted RBP5.04□□□□□ -1.6
CSMD3-202ENST00000339701 TTBK1Q5TCY1 1321 aaPredicted RBP5.03□□□□□ -1.6
CSMD3-202ENST00000339701 PRDM2Q13029 1718 aa5.03□□□□□ -1.6
CSMD3-202ENST00000339701 SMARCA2P51531 1590 aa5.03□□□□□ -1.6
CSMD3-202ENST00000339701 APLP2Q06481 763 aa5□□□□□ -1.61
CSMD3-202ENST00000339701 ZEB1P37275 1124 aaPredicted RBP4.99□□□□□ -1.61
CSMD3-202ENST00000339701 ZCCHC6Q5VYS8 1495 aaKnown RBP4.99□□□□□ -1.61
CSMD3-202ENST00000339701 ESF1Q9H501 851 aaKnown RBP4.92□□□□□ -1.62
CSMD3-202ENST00000339701 ATP1B4Q9UN42 357 aaPredicted RBP4.92□□□□□ -1.62
CSMD3-202ENST00000339701 SUPT5HO00267 1087 aaKnown RBP4.91□□□□□ -1.62
CSMD3-202ENST00000339701 CENPBP07199 599 aaPredicted RBP4.91□□□□□ -1.62
CSMD3-202ENST00000339701 NPM1P06748 294 aaKnown RBP eCLIP4.9□□□□□ -1.62
CSMD3-202ENST00000339701 WDR97A6NE52 1622 aa4.9□□□□□ -1.63
CSMD3-202ENST00000339701 SCAF1Q9H7N4 1312 aaKnown RBP4.9□□□□□ -1.63
CSMD3-202ENST00000339701 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-202ENST00000339701 HNRNPUL2Q1KMD3 747 aaKnown RBP4.89□□□□□ -1.63
CSMD3-202ENST00000339701 ABCC9O60706 1549 aa4.88□□□□□ -1.63
CSMD3-202ENST00000339701 TRHP20396 242 aaPredicted RBP4.86□□□□□ -1.63
CSMD3-202ENST00000339701 BAZ1AQ9NRL2 1556 aaPredicted RBP4.84□□□□□ -1.63
CSMD3-202ENST00000339701 FOXD1Q16676 465 aa4.84□□□□□ -1.63
CSMD3-202ENST00000339701 KIF21AQ7Z4S6 1674 aa4.84□□□□□ -1.63
CSMD3-202ENST00000339701 FBLN2P98095 1184 aa4.83□□□□□ -1.64
CSMD3-202ENST00000339701 CHIC1Q5VXU3 224 aa4.83□□□□□ -1.64
CSMD3-202ENST00000339701 DCAF8L1A6NGE4 600 aa4.83□□□□□ -1.64
CSMD3-202ENST00000339701 EEA1Q15075 1411 aa4.82□□□□□ -1.64
CSMD3-202ENST00000339701 BCANQ96GW7 911 aa4.81□□□□□ -1.64
CSMD3-202ENST00000339701 CLSPNQ9HAW4 1339 aa4.8□□□□□ -1.64
CSMD3-202ENST00000339701 ERICH6Q7L0X2 663 aa4.78□□□□□ -1.64
CSMD3-202ENST00000339701 ABCC8Q09428 1581 aa4.76□□□□□ -1.65
CSMD3-202ENST00000339701 NEFLP07196 543 aa4.76□□□□□ -1.65
CSMD3-202ENST00000339701 PEG3Q9GZU2 1588 aa4.76□□□□□ -1.65
CSMD3-202ENST00000339701 PABPN1Q86U42 306 aaKnown RBP eCLIP4.75□□□□□ -1.65
CSMD3-202ENST00000339701 ERCC6Q03468 1493 aa4.75□□□□□ -1.65
CSMD3-202ENST00000339701 TRIM41Q8WV44 630 aa4.74□□□□□ -1.65
CSMD3-202ENST00000339701 HMGXB3Q12766 1538 aa4.74□□□□□ -1.65
CSMD3-202ENST00000339701 PLPPR3Q6T4P5 718 aa4.74□□□□□ -1.65
CSMD3-202ENST00000339701 UNC13AQ9UPW8 1703 aa4.7□□□□□ -1.66
CSMD3-202ENST00000339701 EHMT2Q96KQ7 1210 aa4.7□□□□□ -1.66
CSMD3-202ENST00000339701 RANGAP1P46060 587 aaPredicted RBP4.7□□□□□ -1.66
CSMD3-202ENST00000339701 STAG3Q9UJ98 1225 aa4.69□□□□□ -1.66
CSMD3-202ENST00000339701 SLC4A1APQ9BWU0 796 aaKnown RBP4.68□□□□□ -1.66
CSMD3-202ENST00000339701 NEFMP07197 916 aa4.68□□□□□ -1.66
CSMD3-202ENST00000339701 ARID4BQ4LE39 1312 aaPredicted RBP4.68□□□□□ -1.66
CSMD3-202ENST00000339701 DAXXQ9UER7 740 aaPredicted RBP4.68□□□□□ -1.66
CSMD3-202ENST00000339701 CHMP7Q8WUX9 453 aaPredicted RBP4.66□□□□□ -1.66
CSMD3-202ENST00000339701 EIF5BO60841 1220 aaKnown RBP4.65□□□□□ -1.67
CSMD3-202ENST00000339701 GLIPR1L2Q4G1C9 344 aa4.65□□□□□ -1.67
CSMD3-202ENST00000339701 HAP1P54257 671 aaPredicted RBP4.64□□□□□ -1.67
CSMD3-202ENST00000339701 CEP162Q5TB80 1403 aa4.64□□□□□ -1.67
CSMD3-202ENST00000339701 CUL7Q14999 1698 aa4.64□□□□□ -1.67
CSMD3-202ENST00000339701 PHF23Q9BUL5 403 aaPredicted RBP4.64□□□□□ -1.67
CSMD3-202ENST00000339701 UBTFP17480 764 aaKnown RBP4.64□□□□□ -1.67
CSMD3-202ENST00000339701 SMARCA4P51532 1647 aa4.64□□□□□ -1.67
CSMD3-202ENST00000339701 TOP2AP11388 1531 aaKnown RBP4.63□□□□□ -1.67
CSMD3-202ENST00000339701 C14orf37Q86TY3 774 aa4.63□□□□□ -1.67
CSMD3-202ENST00000339701 SLC24A1O60721 1099 aa4.62□□□□□ -1.67
CSMD3-202ENST00000339701 GOLGA3Q08378 1498 aa4.62□□□□□ -1.67
CSMD3-202ENST00000339701 CC2D2AQ9P2K1 1620 aa4.61□□□□□ -1.67
CSMD3-202ENST00000339701 NPM2Q86SE8 214 aaKnown RBP4.61□□□□□ -1.67
CSMD3-202ENST00000339701 THOC2Q8NI27 1593 aaKnown RBP4.6□□□□□ -1.67
CSMD3-202ENST00000339701 CDK11AQ9UQ88 783 aaPredicted RBP4.59□□□□□ -1.67
CSMD3-202ENST00000339701 A0A0G2JS52 829 aa4.59□□□□□ -1.68
CSMD3-202ENST00000339701 ANP32EQ9BTT0 268 aa4.58□□□□□ -1.68
CSMD3-202ENST00000339701 SCRIBQ14160 1630 aa4.58□□□□□ -1.68
CSMD3-202ENST00000339701 RTL5Q5HYW3 569 aaPredicted RBP4.58□□□□□ -1.68
CSMD3-202ENST00000339701 LAMC3Q9Y6N6 1575 aa4.58□□□□□ -1.68
CSMD3-202ENST00000339701 GRWD1Q9BQ67 446 aaKnown RBP eCLIP4.58□□□□□ -1.68
CSMD3-202ENST00000339701 ERICH3Q5RHP9 1530 aa4.57□□□□□ -1.68
CSMD3-202ENST00000339701 KIF21BO75037 1637 aa4.54□□□□□ -1.68
CSMD3-202ENST00000339701 EFCAB5A4FU69 1503 aa4.54□□□□□ -1.68
CSMD3-202ENST00000339701 BIVM-ERCC5R4GMW8 1640 aa4.53□□□□□ -1.68
CSMD3-202ENST00000339701 KAT6BQ8WYB5 2073 aa4.53□□□□□ -1.68
CSMD3-202ENST00000339701 CTTNBP2Q8WZ74 1663 aa4.53□□□□□ -1.68
CSMD3-202ENST00000339701 MEX3CQ5U5Q3 659 aaKnown RBP4.52□□□□□ -1.69
CSMD3-202ENST00000339701 ANP32BQ92688 251 aaKnown RBP4.52□□□□□ -1.69
CSMD3-202ENST00000339701 NPHP1O15259 732 aa4.52□□□□□ -1.69
CSMD3-202ENST00000339701 SF3B2Q13435 895 aaKnown RBP4.51□□□□□ -1.69
CSMD3-202ENST00000339701 NCLP19338 710 aaKnown RBP4.51□□□□□ -1.69
CSMD3-202ENST00000339701 ITSN2Q9NZM3 1697 aa4.51□□□□□ -1.69
CSMD3-202ENST00000339701 HDGFP51858 240 aaKnown RBP4.5□□□□□ -1.69
CSMD3-202ENST00000339701 CFAP74Q9C0B2 1584 aa4.5□□□□□ -1.69
CSMD3-202ENST00000339701 PPP1R15AO75807 674 aaPredicted RBP4.49□□□□□ -1.69
CSMD3-202ENST00000339701 NEUROD1Q13562 356 aa4.49□□□□□ -1.69
CSMD3-202ENST00000339701 FHAD1B1AJZ9 1412 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms