RNA–Protein interactions for RNA: ENST00000339140.4

FOXR2-201, Transcript of forkhead box R2, humanhuman

APPRIS P1 BASIC

Gene FOXR2, Length 1,926 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXR2-201ENST00000339140 NISCHQ9Y2I1 1504 aa18.26■□□□□ 0.51
FOXR2-201ENST00000339140 CCDC180Q9P1Z9 1646 aa16.03■□□□□ 0.16
FOXR2-201ENST00000339140 ZCCHC6Q5VYS8 1495 aaKnown RBP15.32■□□□□ 0.04
FOXR2-201ENST00000339140 DCAF1Q9Y4B6 1507 aa15.15■□□□□ 0.02
FOXR2-201ENST00000339140 HRCP23327 699 aa15.14■□□□□ 0.01
FOXR2-201ENST00000339140 ABCC9O60706 1549 aa15.14■□□□□ 0.01
FOXR2-201ENST00000339140 SHROOM4Q9ULL8 1493 aa15.06■□□□□ 0
FOXR2-201ENST00000339140 MYO15BQ96JP2 1530 aa15.02□□□□□ -0.01
FOXR2-201ENST00000339140 SUPT5HO00267 1087 aaKnown RBP15□□□□□ -0.01
FOXR2-201ENST00000339140 DCAF8L2P0C7V8 631 aa15□□□□□ -0.01
FOXR2-201ENST00000339140 NACADO15069 1562 aa14.93□□□□□ -0.02
FOXR2-201ENST00000339140 CHIC1Q5VXU3 224 aa14.83□□□□□ -0.04
FOXR2-201ENST00000339140 RB1CC1Q8TDY2 1594 aa14.81□□□□□ -0.04
FOXR2-201ENST00000339140 PCGF6Q9BYE7 350 aa14.77□□□□□ -0.04
FOXR2-201ENST00000339140 PELP1Q8IZL8 1130 aaKnown RBP14.64□□□□□ -0.07
FOXR2-201ENST00000339140 SCRIBQ14160 1630 aa14.63□□□□□ -0.07
FOXR2-201ENST00000339140 PPARGC1BQ86YN6 1023 aaKnown RBP14.59□□□□□ -0.07
FOXR2-201ENST00000339140 UNC13AQ9UPW8 1703 aa14.55□□□□□ -0.08
FOXR2-201ENST00000339140 TRIM26Q12899 539 aaPredicted RBP14.5□□□□□ -0.09
FOXR2-201ENST00000339140 ZEB1P37275 1124 aaPredicted RBP14.47□□□□□ -0.09
FOXR2-201ENST00000339140 BICRAQ9NZM4 1560 aa14.37□□□□□ -0.11
FOXR2-201ENST00000339140 LOC105371045A0A1W2PR82 267 aa14.33□□□□□ -0.11
FOXR2-201ENST00000339140 AEBP2Q6ZN18 517 aaPredicted RBP14.26□□□□□ -0.13
FOXR2-201ENST00000339140 PABPN1Q86U42 306 aaKnown RBP eCLIP14.23□□□□□ -0.13
FOXR2-201ENST00000339140 CECR2Q9BXF3 1484 aa14.15□□□□□ -0.14
FOXR2-201ENST00000339140 SCAF1Q9H7N4 1312 aaKnown RBP14.14□□□□□ -0.15
FOXR2-201ENST00000339140 MYT1Q01538 1121 aa14.13□□□□□ -0.15
FOXR2-201ENST00000339140 BAZ1AQ9NRL2 1556 aaPredicted RBP14.11□□□□□ -0.15
FOXR2-201ENST00000339140 RSF1Q96T23 1441 aaPredicted RBP14.09□□□□□ -0.15
FOXR2-201ENST00000339140 MROH2BQ7Z745 1585 aa14.07□□□□□ -0.16
FOXR2-201ENST00000339140 SMARCA4P51532 1647 aa14.06□□□□□ -0.16
FOXR2-201ENST00000339140 TRIM41Q8WV44 630 aa14.02□□□□□ -0.17
FOXR2-201ENST00000339140 WIZO95785 1651 aa13.97□□□□□ -0.17
FOXR2-201ENST00000339140 ACIN1Q9UKV3 1341 aaKnown RBP13.95□□□□□ -0.18
FOXR2-201ENST00000339140 PEG3Q9GZU2 1588 aa13.93□□□□□ -0.18
FOXR2-201ENST00000339140 EIF4G1Q04637 1599 aaKnown RBP13.92□□□□□ -0.18
FOXR2-201ENST00000339140 CENPBP07199 599 aaPredicted RBP13.9□□□□□ -0.18
FOXR2-201ENST00000339140 SMARCA2P51531 1590 aa13.85□□□□□ -0.19
FOXR2-201ENST00000339140 ATAD2BQ9ULI0 1458 aa13.84□□□□□ -0.19
FOXR2-201ENST00000339140 TOP2AP11388 1531 aaKnown RBP13.83□□□□□ -0.2
FOXR2-201ENST00000339140 NEUROD1Q13562 356 aa13.81□□□□□ -0.2
FOXR2-201ENST00000339140 FAM9AQ8IZU1 332 aaPredicted RBP13.81□□□□□ -0.2
FOXR2-201ENST00000339140 CCER1Q8TC90 406 aaPredicted RBP13.79□□□□□ -0.2
FOXR2-201ENST00000339140 NCAPD3P42695 1498 aa13.76□□□□□ -0.21
FOXR2-201ENST00000339140 DIEXFQ68CQ4 756 aaKnown RBP13.76□□□□□ -0.21
FOXR2-201ENST00000339140 GTF3C3Q9Y5Q9 886 aa13.75□□□□□ -0.21
FOXR2-201ENST00000339140 BAZ1BQ9UIG0 1483 aaKnown RBP13.75□□□□□ -0.21
FOXR2-201ENST00000339140 CC2D2AQ9P2K1 1620 aa13.75□□□□□ -0.21
FOXR2-201ENST00000339140 HMGXB3Q12766 1538 aa13.74□□□□□ -0.21
FOXR2-201ENST00000339140 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.72□□□□□ -0.21
FOXR2-201ENST00000339140 CCDC88BA6NC98 1476 aa13.67□□□□□ -0.22
FOXR2-201ENST00000339140 WRNQ14191 1432 aaPredicted RBP eCLIP13.66□□□□□ -0.22
FOXR2-201ENST00000339140 EHMT2Q96KQ7 1210 aa13.6□□□□□ -0.23
FOXR2-201ENST00000339140 DNAJC5BQ9UF47 199 aa13.58□□□□□ -0.23
FOXR2-201ENST00000339140 ZNF316A6NFI3 1004 aaPredicted RBP13.57□□□□□ -0.24
FOXR2-201ENST00000339140 CEP162Q5TB80 1403 aa13.49□□□□□ -0.25
FOXR2-201ENST00000339140 TNIKQ9UKE5 1360 aa13.48□□□□□ -0.25
FOXR2-201ENST00000339140 EEA1Q15075 1411 aa13.48□□□□□ -0.25
FOXR2-201ENST00000339140 CLSPNQ9HAW4 1339 aa13.45□□□□□ -0.26
FOXR2-201ENST00000339140 PRDM2Q13029 1718 aa13.42□□□□□ -0.26
FOXR2-201ENST00000339140 CFTRP13569 1480 aa13.41□□□□□ -0.26
FOXR2-201ENST00000339140 CADPSQ9ULU8 1353 aa13.38□□□□□ -0.27
FOXR2-201ENST00000339140 YTHDC1Q96MU7 727 aaKnown RBP13.37□□□□□ -0.27
FOXR2-201ENST00000339140 MIER1Q8N108 512 aa13.35□□□□□ -0.27
FOXR2-201ENST00000339140 GOLGA3Q08378 1498 aa13.34□□□□□ -0.27
FOXR2-201ENST00000339140 ABCC8Q09428 1581 aa13.33□□□□□ -0.27
FOXR2-201ENST00000339140 LAMC3Q9Y6N6 1575 aa13.32□□□□□ -0.28
FOXR2-201ENST00000339140 CSRNP3Q8WYN3 585 aa13.32□□□□□ -0.28
FOXR2-201ENST00000339140 TTBK1Q5TCY1 1321 aaPredicted RBP13.31□□□□□ -0.28
FOXR2-201ENST00000339140 SOGA1O94964 1423 aa13.29□□□□□ -0.28
FOXR2-201ENST00000339140 UBTFP17480 764 aaKnown RBP13.29□□□□□ -0.28
FOXR2-201ENST00000339140 NESP48681 1621 aa13.26□□□□□ -0.29
FOXR2-201ENST00000339140 CEP164Q9UPV0 1460 aa13.23□□□□□ -0.29
FOXR2-201ENST00000339140 KIF21BO75037 1637 aa13.23□□□□□ -0.29
FOXR2-201ENST00000339140 SYNJ1O43426 1573 aa13.22□□□□□ -0.29
FOXR2-201ENST00000339140 FANCD2Q9BXW9 1451 aa13.22□□□□□ -0.29
FOXR2-201ENST00000339140 BIVM-ERCC5R4GMW8 1640 aa13.22□□□□□ -0.29
FOXR2-201ENST00000339140 TOP2BQ02880 1626 aa13.21□□□□□ -0.29
FOXR2-201ENST00000339140 PDS5BQ9NTI5 1447 aa13.2□□□□□ -0.3
FOXR2-201ENST00000339140 VPS8Q8N3P4 1428 aa13.19□□□□□ -0.3
FOXR2-201ENST00000339140 HNRNPUL2Q1KMD3 747 aaKnown RBP13.19□□□□□ -0.3
FOXR2-201ENST00000339140 CUX1P39880 1505 aa13.17□□□□□ -0.3
FOXR2-201ENST00000339140 RUSC2Q8N2Y8 1516 aa13.17□□□□□ -0.3
FOXR2-201ENST00000339140 CLIP1P30622 1438 aa13.17□□□□□ -0.3
FOXR2-201ENST00000339140 APLP2Q06481 763 aa13.17□□□□□ -0.3
FOXR2-201ENST00000339140 KIF21AQ7Z4S6 1674 aa13.16□□□□□ -0.3
FOXR2-201ENST00000339140 SUPT16HQ9Y5B9 1047 aaKnown RBP13.15□□□□□ -0.3
FOXR2-201ENST00000339140 DNMBPQ6XZF7 1577 aa13.11□□□□□ -0.31
FOXR2-201ENST00000339140 ANP32EQ9BTT0 268 aa13.09□□□□□ -0.31
FOXR2-201ENST00000339140 TOPBP1Q92547 1522 aa13.08□□□□□ -0.32
FOXR2-201ENST00000339140 DNAJC5Q9H3Z4 198 aa13.07□□□□□ -0.32
FOXR2-201ENST00000339140 URB2Q14146 1524 aaKnown RBP13.07□□□□□ -0.32
FOXR2-201ENST00000339140 DHX57Q6P158 1386 aaKnown RBP13.06□□□□□ -0.32
FOXR2-201ENST00000339140 TSHZ2Q9NRE2 1034 aa13.05□□□□□ -0.32
FOXR2-201ENST00000339140 FGD5Q6ZNL6 1462 aa13.04□□□□□ -0.32
FOXR2-201ENST00000339140 MRC2Q9UBG0 1479 aa13.03□□□□□ -0.32
FOXR2-201ENST00000339140 POLA1P09884 1462 aaPredicted RBP13□□□□□ -0.33
FOXR2-201ENST00000339140 ERCC6Q03468 1493 aa13□□□□□ -0.33
FOXR2-201ENST00000339140 WDR62O43379 1518 aa12.98□□□□□ -0.33
FOXR2-201ENST00000339140 CUX2O14529 1486 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms