RNA–Protein interactions for RNA: ENST00000332296.7

PRAMEF1-201, Transcript of PRAME family member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRAMEF1, Length 2,160 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAMEF1-201ENST00000332296 NISCHQ9Y2I1 1504 aa21.71■■□□□ 1.07
PRAMEF1-201ENST00000332296 CHIC1Q5VXU3 224 aa20.58■□□□□ 0.88
PRAMEF1-201ENST00000332296 AEBP2Q6ZN18 517 aaPredicted RBP19.81■□□□□ 0.76
PRAMEF1-201ENST00000332296 CCDC180Q9P1Z9 1646 aa19.05■□□□□ 0.64
PRAMEF1-201ENST00000332296 PHF23Q9BUL5 403 aaPredicted RBP18.44■□□□□ 0.54
PRAMEF1-201ENST00000332296 ABCC9O60706 1549 aa18.28■□□□□ 0.52
PRAMEF1-201ENST00000332296 ZCCHC6Q5VYS8 1495 aaKnown RBP18.17■□□□□ 0.5
PRAMEF1-201ENST00000332296 DCAF8L2P0C7V8 631 aa18.08■□□□□ 0.49
PRAMEF1-201ENST00000332296 DCAF1Q9Y4B6 1507 aa17.91■□□□□ 0.46
PRAMEF1-201ENST00000332296 NACADO15069 1562 aa17.8■□□□□ 0.44
PRAMEF1-201ENST00000332296 MYO15BQ96JP2 1530 aa17.79■□□□□ 0.44
PRAMEF1-201ENST00000332296 SHROOM4Q9ULL8 1493 aa17.76■□□□□ 0.43
PRAMEF1-201ENST00000332296 RB1CC1Q8TDY2 1594 aa17.72■□□□□ 0.43
PRAMEF1-201ENST00000332296 EHMT2Q96KQ7 1210 aa17.67■□□□□ 0.42
PRAMEF1-201ENST00000332296 SCRIBQ14160 1630 aa17.52■□□□□ 0.4
PRAMEF1-201ENST00000332296 UNC13AQ9UPW8 1703 aa17.41■□□□□ 0.38
PRAMEF1-201ENST00000332296 SUPT5HO00267 1087 aaKnown RBP17.39■□□□□ 0.37
PRAMEF1-201ENST00000332296 PLPPR3Q6T4P5 718 aa17.29■□□□□ 0.36
PRAMEF1-201ENST00000332296 SLC24A1O60721 1099 aa17.22■□□□□ 0.35
PRAMEF1-201ENST00000332296 PABPN1Q86U42 306 aaKnown RBP eCLIP17.2■□□□□ 0.34
PRAMEF1-201ENST00000332296 BICRAQ9NZM4 1560 aa17.19■□□□□ 0.34
PRAMEF1-201ENST00000332296 KCNA4P22459 653 aa16.96■□□□□ 0.31
PRAMEF1-201ENST00000332296 CECR2Q9BXF3 1484 aa16.9■□□□□ 0.3
PRAMEF1-201ENST00000332296 BAZ1AQ9NRL2 1556 aaPredicted RBP16.78■□□□□ 0.28
PRAMEF1-201ENST00000332296 MROH2BQ7Z745 1585 aa16.78■□□□□ 0.28
PRAMEF1-201ENST00000332296 SMARCA4P51532 1647 aa16.76■□□□□ 0.27
PRAMEF1-201ENST00000332296 CSRNP3Q8WYN3 585 aa16.75■□□□□ 0.27
PRAMEF1-201ENST00000332296 RSF1Q96T23 1441 aaPredicted RBP16.74■□□□□ 0.27
PRAMEF1-201ENST00000332296 EIF4G1Q04637 1599 aaKnown RBP16.7■□□□□ 0.26
PRAMEF1-201ENST00000332296 WIZO95785 1651 aa16.65■□□□□ 0.26
PRAMEF1-201ENST00000332296 HRCP23327 699 aa16.54■□□□□ 0.24
PRAMEF1-201ENST00000332296 CC2D2AQ9P2K1 1620 aa16.54■□□□□ 0.24
PRAMEF1-201ENST00000332296 PEG3Q9GZU2 1588 aa16.53■□□□□ 0.24
PRAMEF1-201ENST00000332296 ATAD2BQ9ULI0 1458 aa16.53■□□□□ 0.24
PRAMEF1-201ENST00000332296 SMARCA2P51531 1590 aa16.51■□□□□ 0.23
PRAMEF1-201ENST00000332296 PCGF6Q9BYE7 350 aa16.48■□□□□ 0.23
PRAMEF1-201ENST00000332296 LOC105371045A0A1W2PR82 267 aa16.45■□□□□ 0.22
PRAMEF1-201ENST00000332296 ADRA2BP18089 450 aa16.44■□□□□ 0.22
PRAMEF1-201ENST00000332296 BAZ1BQ9UIG0 1483 aaKnown RBP16.43■□□□□ 0.22
PRAMEF1-201ENST00000332296 TOP2AP11388 1531 aaKnown RBP16.43■□□□□ 0.22
PRAMEF1-201ENST00000332296 NCAPD3P42695 1498 aa16.41■□□□□ 0.22
PRAMEF1-201ENST00000332296 RTN4Q9NQC3 1192 aaKnown RBP16.4■□□□□ 0.22
PRAMEF1-201ENST00000332296 HMGXB3Q12766 1538 aa16.37■□□□□ 0.21
PRAMEF1-201ENST00000332296 DNAJC5BQ9UF47 199 aa16.36■□□□□ 0.21
PRAMEF1-201ENST00000332296 SENP3Q9H4L4 574 aaPredicted RBP16.28■□□□□ 0.2
PRAMEF1-201ENST00000332296 SLC4A1APQ9BWU0 796 aaKnown RBP16.27■□□□□ 0.2
PRAMEF1-201ENST00000332296 CCDC88BA6NC98 1476 aa16.27■□□□□ 0.2
PRAMEF1-201ENST00000332296 PPARGC1BQ86YN6 1023 aaKnown RBP16.25■□□□□ 0.19
PRAMEF1-201ENST00000332296 TRIM41Q8WV44 630 aa16.16■□□□□ 0.18
PRAMEF1-201ENST00000332296 TRIM26Q12899 539 aaPredicted RBP16.12■□□□□ 0.17
PRAMEF1-201ENST00000332296 AMER1Q5JTC6 1135 aaPredicted RBP16.1■□□□□ 0.17
PRAMEF1-201ENST00000332296 FAM9AQ8IZU1 332 aaPredicted RBP16.07■□□□□ 0.16
PRAMEF1-201ENST00000332296 CADPSQ9ULU8 1353 aa15.99■□□□□ 0.15
PRAMEF1-201ENST00000332296 CFTRP13569 1480 aa15.99■□□□□ 0.15
PRAMEF1-201ENST00000332296 NESP48681 1621 aa15.97■□□□□ 0.15
PRAMEF1-201ENST00000332296 PRDM2Q13029 1718 aa15.94■□□□□ 0.14
PRAMEF1-201ENST00000332296 LAMC3Q9Y6N6 1575 aa15.92■□□□□ 0.14
PRAMEF1-201ENST00000332296 ABCC8Q09428 1581 aa15.87■□□□□ 0.13
PRAMEF1-201ENST00000332296 PPP6R1Q9UPN7 881 aa15.84■□□□□ 0.13
PRAMEF1-201ENST00000332296 FANCD2Q9BXW9 1451 aa15.83■□□□□ 0.12
PRAMEF1-201ENST00000332296 PDS5BQ9NTI5 1447 aa15.8■□□□□ 0.12
PRAMEF1-201ENST00000332296 KIF21AQ7Z4S6 1674 aa15.79■□□□□ 0.12
PRAMEF1-201ENST00000332296 WRNQ14191 1432 aaPredicted RBP eCLIP15.77■□□□□ 0.12
PRAMEF1-201ENST00000332296 ZEB1P37275 1124 aaPredicted RBP15.75■□□□□ 0.11
PRAMEF1-201ENST00000332296 CEP164Q9UPV0 1460 aa15.75■□□□□ 0.11
PRAMEF1-201ENST00000332296 SYNJ1O43426 1573 aa15.73■□□□□ 0.11
PRAMEF1-201ENST00000332296 ZBTB22O15209 634 aa15.73■□□□□ 0.11
PRAMEF1-201ENST00000332296 CUX1P39880 1505 aa15.7■□□□□ 0.1
PRAMEF1-201ENST00000332296 ERCC6Q03468 1493 aa15.7■□□□□ 0.1
PRAMEF1-201ENST00000332296 TOP2BQ02880 1626 aa15.68■□□□□ 0.1
PRAMEF1-201ENST00000332296 BIVM-ERCC5R4GMW8 1640 aa15.67■□□□□ 0.1
PRAMEF1-201ENST00000332296 URB2Q14146 1524 aaKnown RBP15.64■□□□□ 0.09
PRAMEF1-201ENST00000332296 DNMBPQ6XZF7 1577 aa15.63■□□□□ 0.09
PRAMEF1-201ENST00000332296 TOPBP1Q92547 1522 aa15.63■□□□□ 0.09
PRAMEF1-201ENST00000332296 MRC2Q9UBG0 1479 aa15.61■□□□□ 0.09
PRAMEF1-201ENST00000332296 SOGA1O94964 1423 aa15.6■□□□□ 0.09
PRAMEF1-201ENST00000332296 FGD5Q6ZNL6 1462 aa15.57■□□□□ 0.08
PRAMEF1-201ENST00000332296 THOC2Q8NI27 1593 aaKnown RBP15.57■□□□□ 0.08
PRAMEF1-201ENST00000332296 CEP162Q5TB80 1403 aa15.56■□□□□ 0.08
PRAMEF1-201ENST00000332296 RUSC2Q8N2Y8 1516 aa15.55■□□□□ 0.08
PRAMEF1-201ENST00000332296 WDR62O43379 1518 aa15.54■□□□□ 0.08
PRAMEF1-201ENST00000332296 POLA1P09884 1462 aaPredicted RBP15.53■□□□□ 0.08
PRAMEF1-201ENST00000332296 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.52■□□□□ 0.07
PRAMEF1-201ENST00000332296 PPP4R3CPQ6ZMV5 832 aa15.51■□□□□ 0.07
PRAMEF1-201ENST00000332296 RAD54L2Q9Y4B4 1467 aa15.5■□□□□ 0.07
PRAMEF1-201ENST00000332296 TNIKQ9UKE5 1360 aa15.49■□□□□ 0.07
PRAMEF1-201ENST00000332296 TTBK1Q5TCY1 1321 aaPredicted RBP15.47■□□□□ 0.07
PRAMEF1-201ENST00000332296 EEA1Q15075 1411 aa15.47■□□□□ 0.07
PRAMEF1-201ENST00000332296 CUX2O14529 1486 aa15.44■□□□□ 0.06
PRAMEF1-201ENST00000332296 NCBP3Q53F19 620 aaKnown RBP15.43■□□□□ 0.06
PRAMEF1-201ENST00000332296 CCER1Q8TC90 406 aaPredicted RBP15.43■□□□□ 0.06
PRAMEF1-201ENST00000332296 TARBP1Q13395 1621 aaKnown RBP15.42■□□□□ 0.06
PRAMEF1-201ENST00000332296 GOLGA3Q08378 1498 aa15.41■□□□□ 0.06
PRAMEF1-201ENST00000332296 ABCA10Q8WWZ4 1543 aa15.41■□□□□ 0.06
PRAMEF1-201ENST00000332296 WDR97A6NE52 1622 aa15.4■□□□□ 0.06
PRAMEF1-201ENST00000332296 KIF27Q86VH2 1401 aa15.39■□□□□ 0.05
PRAMEF1-201ENST00000332296 IFT140Q96RY7 1462 aa15.38■□□□□ 0.05
PRAMEF1-201ENST00000332296 UBTFP17480 764 aaKnown RBP15.38■□□□□ 0.05
PRAMEF1-201ENST00000332296 TDRD9Q8NDG6 1382 aaKnown RBP15.37■□□□□ 0.05
PRAMEF1-201ENST00000332296 NPM3O75607 178 aaKnown RBP15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms