RNA–Protein interactions for RNA: ENST00000330688.8

RARB-201, Transcript of retinoic acid receptor beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RARB, Length 3,084 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RARB-201ENST00000330688 NISCHQ9Y2I1 1504 aa21.04■□□□□ 0.96
RARB-201ENST00000330688 SHROOM4Q9ULL8 1493 aa17.88■□□□□ 0.45
RARB-201ENST00000330688 CCDC180Q9P1Z9 1646 aa17.86■□□□□ 0.45
RARB-201ENST00000330688 ZCCHC6Q5VYS8 1495 aaKnown RBP17.78■□□□□ 0.44
RARB-201ENST00000330688 SUPT5HO00267 1087 aaKnown RBP17.52■□□□□ 0.4
RARB-201ENST00000330688 DCAF8L2P0C7V8 631 aa17.45■□□□□ 0.38
RARB-201ENST00000330688 DCAF1Q9Y4B6 1507 aa17.26■□□□□ 0.35
RARB-201ENST00000330688 CHIC1Q5VXU3 224 aa17.04■□□□□ 0.32
RARB-201ENST00000330688 MYO15BQ96JP2 1530 aa16.93■□□□□ 0.3
RARB-201ENST00000330688 SCRIBQ14160 1630 aa16.74■□□□□ 0.27
RARB-201ENST00000330688 ABCC9O60706 1549 aa16.74■□□□□ 0.27
RARB-201ENST00000330688 RSF1Q96T23 1441 aaPredicted RBP16.64■□□□□ 0.25
RARB-201ENST00000330688 NACADO15069 1562 aa16.55■□□□□ 0.24
RARB-201ENST00000330688 LOC105371045A0A1W2PR82 267 aa16.53■□□□□ 0.24
RARB-201ENST00000330688 PCGF6Q9BYE7 350 aa16.43■□□□□ 0.22
RARB-201ENST00000330688 CECR2Q9BXF3 1484 aa16.42■□□□□ 0.22
RARB-201ENST00000330688 RB1CC1Q8TDY2 1594 aa16.41■□□□□ 0.22
RARB-201ENST00000330688 HRCP23327 699 aa16.4■□□□□ 0.22
RARB-201ENST00000330688 MROH2BQ7Z745 1585 aa16.35■□□□□ 0.21
RARB-201ENST00000330688 TRIM41Q8WV44 630 aa16.33■□□□□ 0.2
RARB-201ENST00000330688 WIZO95785 1651 aa16.24■□□□□ 0.19
RARB-201ENST00000330688 FAM9AQ8IZU1 332 aaPredicted RBP16.18■□□□□ 0.18
RARB-201ENST00000330688 BAZ1AQ9NRL2 1556 aaPredicted RBP16.14■□□□□ 0.17
RARB-201ENST00000330688 TRIM26Q12899 539 aaPredicted RBP16.14■□□□□ 0.17
RARB-201ENST00000330688 PPARGC1BQ86YN6 1023 aaKnown RBP16.07■□□□□ 0.16
RARB-201ENST00000330688 EHMT2Q96KQ7 1210 aa16.03■□□□□ 0.16
RARB-201ENST00000330688 UNC13AQ9UPW8 1703 aa16.01■□□□□ 0.15
RARB-201ENST00000330688 SMARCA4P51532 1647 aa16.01■□□□□ 0.15
RARB-201ENST00000330688 EIF4G1Q04637 1599 aaKnown RBP16■□□□□ 0.15
RARB-201ENST00000330688 TOP2AP11388 1531 aaKnown RBP15.99■□□□□ 0.15
RARB-201ENST00000330688 CCDC88BA6NC98 1476 aa15.94■□□□□ 0.14
RARB-201ENST00000330688 PABPN1Q86U42 306 aaKnown RBP eCLIP15.91■□□□□ 0.14
RARB-201ENST00000330688 SMARCA2P51531 1590 aa15.9■□□□□ 0.14
RARB-201ENST00000330688 BICRAQ9NZM4 1560 aa15.87■□□□□ 0.13
RARB-201ENST00000330688 ABCC8Q09428 1581 aa15.86■□□□□ 0.13
RARB-201ENST00000330688 ZEB1P37275 1124 aaPredicted RBP15.74■□□□□ 0.11
RARB-201ENST00000330688 SOGA1O94964 1423 aa15.73■□□□□ 0.11
RARB-201ENST00000330688 PEG3Q9GZU2 1588 aa15.72■□□□□ 0.11
RARB-201ENST00000330688 RUSC2Q8N2Y8 1516 aa15.66■□□□□ 0.1
RARB-201ENST00000330688 CSRNP3Q8WYN3 585 aa15.64■□□□□ 0.09
RARB-201ENST00000330688 ATAD2BQ9ULI0 1458 aa15.64■□□□□ 0.09
RARB-201ENST00000330688 EEA1Q15075 1411 aa15.63■□□□□ 0.09
RARB-201ENST00000330688 WRNQ14191 1432 aaPredicted RBP eCLIP15.62■□□□□ 0.091e-7■■■■■ 66.8
RARB-201ENST00000330688 CEP162Q5TB80 1403 aa15.61■□□□□ 0.09
RARB-201ENST00000330688 TNIKQ9UKE5 1360 aa15.61■□□□□ 0.09
RARB-201ENST00000330688 BAZ1BQ9UIG0 1483 aaKnown RBP15.57■□□□□ 0.08
RARB-201ENST00000330688 UBTFP17480 764 aaKnown RBP15.55■□□□□ 0.08
RARB-201ENST00000330688 SYNJ1O43426 1573 aa15.53■□□□□ 0.08
RARB-201ENST00000330688 GOLGA3Q08378 1498 aa15.51■□□□□ 0.07
RARB-201ENST00000330688 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.5■□□□□ 0.07
RARB-201ENST00000330688 TTBK1Q5TCY1 1321 aaPredicted RBP15.5■□□□□ 0.07
RARB-201ENST00000330688 CCER1Q8TC90 406 aaPredicted RBP15.44■□□□□ 0.06
RARB-201ENST00000330688 CEP164Q9UPV0 1460 aa15.43■□□□□ 0.06
RARB-201ENST00000330688 KIF21BO75037 1637 aa15.39■□□□□ 0.05
RARB-201ENST00000330688 NCAPD3P42695 1498 aa15.35■□□□□ 0.05
RARB-201ENST00000330688 RAPGEF2Q9Y4G8 1499 aa15.34■□□□□ 0.05
RARB-201ENST00000330688 TOP2BQ02880 1626 aa15.34■□□□□ 0.05
RARB-201ENST00000330688 CLIP1P30622 1438 aa15.34■□□□□ 0.05
RARB-201ENST00000330688 HMGXB3Q12766 1538 aa15.31■□□□□ 0.04
RARB-201ENST00000330688 BIVM-ERCC5R4GMW8 1640 aa15.27■□□□□ 0.04
RARB-201ENST00000330688 VPS8Q8N3P4 1428 aa15.27■□□□□ 0.03
RARB-201ENST00000330688 RANGAP1P46060 587 aaPredicted RBP15.25■□□□□ 0.03
RARB-201ENST00000330688 CUX1P39880 1505 aa15.22■□□□□ 0.03
RARB-201ENST00000330688 CFTRP13569 1480 aa15.21■□□□□ 0.03
RARB-201ENST00000330688 PRXQ9BXM0 1461 aa15.21■□□□□ 0.03
RARB-201ENST00000330688 APLP2Q06481 763 aa15.18■□□□□ 0.02
RARB-201ENST00000330688 HNRNPUL2Q1KMD3 747 aaKnown RBP15.18■□□□□ 0.02
RARB-201ENST00000330688 ERICH3Q5RHP9 1530 aa15.17■□□□□ 0.02
RARB-201ENST00000330688 KIF27Q86VH2 1401 aa15.14■□□□□ 0.01
RARB-201ENST00000330688 DIEXFQ68CQ4 756 aaKnown RBP15.11■□□□□ 0.01
RARB-201ENST00000330688 ARAP1Q96P48 1450 aa15.1■□□□□ 0.01
RARB-201ENST00000330688 SCAF1Q9H7N4 1312 aaKnown RBP15.06■□□□□ 0
RARB-201ENST00000330688 CADPSQ9ULU8 1353 aa15.06■□□□□ 0
RARB-201ENST00000330688 KANK4Q5T7N3 995 aaPredicted RBP15.04■□□□□ -0
RARB-201ENST00000330688 ZNF316A6NFI3 1004 aaPredicted RBP15.03■□□□□ -0
RARB-201ENST00000330688 IGF1RP08069 1367 aa15.01□□□□□ -0.01
RARB-201ENST00000330688 CUX2O14529 1486 aa15□□□□□ -0.01
RARB-201ENST00000330688 PRDM2Q13029 1718 aa14.99□□□□□ -0.01
RARB-201ENST00000330688 ARHGAP35Q9NRY4 1499 aa14.99□□□□□ -0.01
RARB-201ENST00000330688 FGD5Q6ZNL6 1462 aa14.95□□□□□ -0.02
RARB-201ENST00000330688 CC2D2AQ9P2K1 1620 aa14.95□□□□□ -0.02
RARB-201ENST00000330688 ACIN1Q9UKV3 1341 aaKnown RBP14.95□□□□□ -0.02
RARB-201ENST00000330688 NEUROD1Q13562 356 aa14.94□□□□□ -0.02
RARB-201ENST00000330688 CARMIL1Q5VZK9 1371 aa14.93□□□□□ -0.02
RARB-201ENST00000330688 RRBP1Q9P2E9 1410 aaKnown RBP14.91□□□□□ -0.02
RARB-201ENST00000330688 FANCD2Q9BXW9 1451 aa14.89□□□□□ -0.03
RARB-201ENST00000330688 DHX57Q6P158 1386 aaKnown RBP14.89□□□□□ -0.03
RARB-201ENST00000330688 CLSPNQ9HAW4 1339 aa14.86□□□□□ -0.03
RARB-201ENST00000330688 CCNB3Q8WWL7 1395 aa14.85□□□□□ -0.03
RARB-201ENST00000330688 CENPBP07199 599 aaPredicted RBP14.84□□□□□ -0.03
RARB-201ENST00000330688 RAD54L2Q9Y4B4 1467 aa14.82□□□□□ -0.04
RARB-201ENST00000330688 MIER1Q8N108 512 aa14.81□□□□□ -0.04
RARB-201ENST00000330688 NESP48681 1621 aa14.81□□□□□ -0.04
RARB-201ENST00000330688 DNMBPQ6XZF7 1577 aa14.8□□□□□ -0.04
RARB-201ENST00000330688 ITGAEP38570 1179 aa14.79□□□□□ -0.04
RARB-201ENST00000330688 TIAM1Q13009 1591 aa14.79□□□□□ -0.04
RARB-201ENST00000330688 MAP3K1Q13233 1512 aa14.79□□□□□ -0.04
RARB-201ENST00000330688 TOPBP1Q92547 1522 aa14.79□□□□□ -0.04
RARB-201ENST00000330688 POLA1P09884 1462 aaPredicted RBP14.79□□□□□ -0.04
RARB-201ENST00000330688 ABCA10Q8WWZ4 1543 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms