RNA–Protein interactions for RNA: ENST00000328514.11

GINS3-202, Transcript of GINS complex subunit 3, humanhuman

TSL 1 (best) BASIC

Gene GINS3, Length 1,932 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GINS3-202ENST00000328514 NISCHQ9Y2I1 1504 aa22.13■■□□□ 1.13
GINS3-202ENST00000328514 ABCC9O60706 1549 aa18.98■□□□□ 0.63
GINS3-202ENST00000328514 HRCP23327 699 aa18.98■□□□□ 0.63
GINS3-202ENST00000328514 SHROOM4Q9ULL8 1493 aa18.95■□□□□ 0.62
GINS3-202ENST00000328514 ZCCHC6Q5VYS8 1495 aaKnown RBP18.84■□□□□ 0.61
GINS3-202ENST00000328514 SUPT5HO00267 1087 aaKnown RBP18.83■□□□□ 0.6
GINS3-202ENST00000328514 MYO15BQ96JP2 1530 aa18.73■□□□□ 0.59
GINS3-202ENST00000328514 CHIC1Q5VXU3 224 aa18.7■□□□□ 0.58
GINS3-202ENST00000328514 CCDC180Q9P1Z9 1646 aa18.65■□□□□ 0.58
GINS3-202ENST00000328514 DNAJC5BQ9UF47 199 aa18.64■□□□□ 0.57
GINS3-202ENST00000328514 DCAF1Q9Y4B6 1507 aa18.52■□□□□ 0.56
GINS3-202ENST00000328514 PCGF6Q9BYE7 350 aa18.5■□□□□ 0.55
GINS3-202ENST00000328514 PPARGC1BQ86YN6 1023 aaKnown RBP18.32■□□□□ 0.52
GINS3-202ENST00000328514 TRIM26Q12899 539 aaPredicted RBP18.17■□□□□ 0.5
GINS3-202ENST00000328514 PELP1Q8IZL8 1130 aaKnown RBP18.14■□□□□ 0.49
GINS3-202ENST00000328514 ZEB1P37275 1124 aaPredicted RBP18.06■□□□□ 0.48
GINS3-202ENST00000328514 LOC105371045A0A1W2PR82 267 aa18.04■□□□□ 0.48
GINS3-202ENST00000328514 DCAF8L2P0C7V8 631 aa17.89■□□□□ 0.45
GINS3-202ENST00000328514 DNAJC5Q9H3Z4 198 aa17.8■□□□□ 0.44
GINS3-202ENST00000328514 SCAF1Q9H7N4 1312 aaKnown RBP17.72■□□□□ 0.43
GINS3-202ENST00000328514 RSF1Q96T23 1441 aaPredicted RBP17.67■□□□□ 0.42
GINS3-202ENST00000328514 RB1CC1Q8TDY2 1594 aa17.6■□□□□ 0.41
GINS3-202ENST00000328514 TRIM41Q8WV44 630 aa17.59■□□□□ 0.41
GINS3-202ENST00000328514 PABPN1Q86U42 306 aaKnown RBP eCLIP17.51■□□□□ 0.39
GINS3-202ENST00000328514 ACIN1Q9UKV3 1341 aaKnown RBP17.44■□□□□ 0.38
GINS3-202ENST00000328514 MYT1Q01538 1121 aa17.43■□□□□ 0.38
GINS3-202ENST00000328514 SCRIBQ14160 1630 aa17.38■□□□□ 0.37
GINS3-202ENST00000328514 FAM9AQ8IZU1 332 aaPredicted RBP17.33■□□□□ 0.36
GINS3-202ENST00000328514 NEUROD1Q13562 356 aa17.31■□□□□ 0.36
GINS3-202ENST00000328514 CENPBP07199 599 aaPredicted RBP17.26■□□□□ 0.35
GINS3-202ENST00000328514 WRNQ14191 1432 aaPredicted RBP eCLIP17.23■□□□□ 0.35
GINS3-202ENST00000328514 CCER1Q8TC90 406 aaPredicted RBP17.23■□□□□ 0.35
GINS3-202ENST00000328514 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.21■□□□□ 0.35
GINS3-202ENST00000328514 DIEXFQ68CQ4 756 aaKnown RBP17.21■□□□□ 0.35
GINS3-202ENST00000328514 EIF4G1Q04637 1599 aaKnown RBP17.2■□□□□ 0.34
GINS3-202ENST00000328514 UNC13AQ9UPW8 1703 aa17.2■□□□□ 0.34
GINS3-202ENST00000328514 NACADO15069 1562 aa17.18■□□□□ 0.34
GINS3-202ENST00000328514 CECR2Q9BXF3 1484 aa17.18■□□□□ 0.34
GINS3-202ENST00000328514 GTF3C3Q9Y5Q9 886 aa17.17■□□□□ 0.34
GINS3-202ENST00000328514 MROH2BQ7Z745 1585 aa17.17■□□□□ 0.34
GINS3-202ENST00000328514 BAZ1AQ9NRL2 1556 aaPredicted RBP17.11■□□□□ 0.33
GINS3-202ENST00000328514 BICRAQ9NZM4 1560 aa17.11■□□□□ 0.33
GINS3-202ENST00000328514 WIZO95785 1651 aa17.08■□□□□ 0.32
GINS3-202ENST00000328514 CC2D2AQ9P2K1 1620 aa17.07■□□□□ 0.32
GINS3-202ENST00000328514 EHMT2Q96KQ7 1210 aa17.04■□□□□ 0.32
GINS3-202ENST00000328514 CEP162Q5TB80 1403 aa16.99■□□□□ 0.31
GINS3-202ENST00000328514 ZNF316A6NFI3 1004 aaPredicted RBP16.99■□□□□ 0.31
GINS3-202ENST00000328514 TNIKQ9UKE5 1360 aa16.99■□□□□ 0.31
GINS3-202ENST00000328514 EEA1Q15075 1411 aa16.95■□□□□ 0.3
GINS3-202ENST00000328514 TOP2AP11388 1531 aaKnown RBP16.9■□□□□ 0.3
GINS3-202ENST00000328514 CCDC88BA6NC98 1476 aa16.9■□□□□ 0.3
GINS3-202ENST00000328514 ABCC8Q09428 1581 aa16.84■□□□□ 0.29
GINS3-202ENST00000328514 SMARCA2P51531 1590 aa16.8■□□□□ 0.28
GINS3-202ENST00000328514 SOGA1O94964 1423 aa16.8■□□□□ 0.28
GINS3-202ENST00000328514 GOLGA3Q08378 1498 aa16.78■□□□□ 0.28
GINS3-202ENST00000328514 CSRNP3Q8WYN3 585 aa16.77■□□□□ 0.28
GINS3-202ENST00000328514 CLSPNQ9HAW4 1339 aa16.76■□□□□ 0.27
GINS3-202ENST00000328514 MIER1Q8N108 512 aa16.75■□□□□ 0.27
GINS3-202ENST00000328514 SMARCA4P51532 1647 aa16.74■□□□□ 0.27
GINS3-202ENST00000328514 CUX2O14529 1486 aa16.71■□□□□ 0.26
GINS3-202ENST00000328514 KIF21BO75037 1637 aa16.67■□□□□ 0.26
GINS3-202ENST00000328514 YTHDC1Q96MU7 727 aaKnown RBP16.67■□□□□ 0.26
GINS3-202ENST00000328514 RUSC2Q8N2Y8 1516 aa16.67■□□□□ 0.26
GINS3-202ENST00000328514 TTBK1Q5TCY1 1321 aaPredicted RBP16.66■□□□□ 0.26
GINS3-202ENST00000328514 UBTFP17480 764 aaKnown RBP16.64■□□□□ 0.26
GINS3-202ENST00000328514 CEP164Q9UPV0 1460 aa16.64■□□□□ 0.25
GINS3-202ENST00000328514 VPS8Q8N3P4 1428 aa16.61■□□□□ 0.25
GINS3-202ENST00000328514 BAZ1BQ9UIG0 1483 aaKnown RBP16.59■□□□□ 0.25
GINS3-202ENST00000328514 CLIP1P30622 1438 aa16.56■□□□□ 0.24
GINS3-202ENST00000328514 HNRNPUL2Q1KMD3 747 aaKnown RBP16.53■□□□□ 0.24
GINS3-202ENST00000328514 PEG3Q9GZU2 1588 aa16.49■□□□□ 0.23
GINS3-202ENST00000328514 SUPT16HQ9Y5B9 1047 aaKnown RBP16.49■□□□□ 0.23
GINS3-202ENST00000328514 SYNJ1O43426 1573 aa16.46■□□□□ 0.23
GINS3-202ENST00000328514 ERCC6Q03468 1493 aa16.46■□□□□ 0.23
GINS3-202ENST00000328514 DHX57Q6P158 1386 aaKnown RBP16.45■□□□□ 0.22
GINS3-202ENST00000328514 APLP2Q06481 763 aa16.41■□□□□ 0.22
GINS3-202ENST00000328514 RAPGEF2Q9Y4G8 1499 aa16.39■□□□□ 0.21
GINS3-202ENST00000328514 TSHZ2Q9NRE2 1034 aa16.35■□□□□ 0.21
GINS3-202ENST00000328514 ERICH3Q5RHP9 1530 aa16.34■□□□□ 0.21
GINS3-202ENST00000328514 RRBP1Q9P2E9 1410 aaKnown RBP16.33■□□□□ 0.21
GINS3-202ENST00000328514 ANP32EQ9BTT0 268 aa16.32■□□□□ 0.2
GINS3-202ENST00000328514 TOP2BQ02880 1626 aa16.28■□□□□ 0.2
GINS3-202ENST00000328514 ARAP1Q96P48 1450 aa16.27■□□□□ 0.19
GINS3-202ENST00000328514 PRXQ9BXM0 1461 aa16.27■□□□□ 0.19
GINS3-202ENST00000328514 BIVM-ERCC5R4GMW8 1640 aa16.22■□□□□ 0.19
GINS3-202ENST00000328514 ATAD2BQ9ULI0 1458 aa16.19■□□□□ 0.18
GINS3-202ENST00000328514 CCNB3Q8WWL7 1395 aa16.16■□□□□ 0.18
GINS3-202ENST00000328514 KANK4Q5T7N3 995 aaPredicted RBP16.16■□□□□ 0.18
GINS3-202ENST00000328514 MAPKBP1O60336 1514 aa16.13■□□□□ 0.17
GINS3-202ENST00000328514 MAP3K1Q13233 1512 aa16.1■□□□□ 0.17
GINS3-202ENST00000328514 TIMELESSQ9UNS1 1208 aa16.06■□□□□ 0.16
GINS3-202ENST00000328514 BCL11AQ9H165 835 aa16.06■□□□□ 0.16
GINS3-202ENST00000328514 RAB3GAP2Q9H2M9 1393 aa16.05■□□□□ 0.16
GINS3-202ENST00000328514 KCNH8Q96L42 1107 aa16.05■□□□□ 0.16
GINS3-202ENST00000328514 THOC2Q8NI27 1593 aaKnown RBP16.05■□□□□ 0.16
GINS3-202ENST00000328514 ARHGAP35Q9NRY4 1499 aa16.04■□□□□ 0.16
GINS3-202ENST00000328514 KIF27Q86VH2 1401 aa16.02■□□□□ 0.16
GINS3-202ENST00000328514 CCER2I3L3R5 266 aa16.02■□□□□ 0.16
GINS3-202ENST00000328514 NESP48681 1621 aa16.02■□□□□ 0.16
GINS3-202ENST00000328514 RANGAP1P46060 587 aaPredicted RBP16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms