RNA–Protein interactions for RNA: ENST00000296742.11

CAGE1-201, Transcript of cancer antigen 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CAGE1, Length 2,821 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAGE1-201ENST00000296742 NISCHQ9Y2I1 1504 aa25.97■■□□□ 1.75
CAGE1-201ENST00000296742 SHROOM4Q9ULL8 1493 aa22.16■■□□□ 1.14
CAGE1-201ENST00000296742 CCDC180Q9P1Z9 1646 aa22.12■■□□□ 1.13
CAGE1-201ENST00000296742 DCAF8L2P0C7V8 631 aa22.01■■□□□ 1.11
CAGE1-201ENST00000296742 ZCCHC6Q5VYS8 1495 aaKnown RBP21.86■■□□□ 1.09
CAGE1-201ENST00000296742 SUPT5HO00267 1087 aaKnown RBP21.55■■□□□ 1.04
CAGE1-201ENST00000296742 DCAF1Q9Y4B6 1507 aa21.17■□□□□ 0.98
CAGE1-201ENST00000296742 ABCC9O60706 1549 aa21.12■□□□□ 0.97
CAGE1-201ENST00000296742 SCRIBQ14160 1630 aa20.89■□□□□ 0.94
CAGE1-201ENST00000296742 HRCP23327 699 aa20.87■□□□□ 0.93
CAGE1-201ENST00000296742 MYO15BQ96JP2 1530 aa20.67■□□□□ 0.9
CAGE1-201ENST00000296742 CHIC1Q5VXU3 224 aa20.63■□□□□ 0.89
CAGE1-201ENST00000296742 NACADO15069 1562 aa20.6■□□□□ 0.89
CAGE1-201ENST00000296742 PPARGC1BQ86YN6 1023 aaKnown RBP20.54■□□□□ 0.88
CAGE1-201ENST00000296742 PCGF6Q9BYE7 350 aa20.52■□□□□ 0.88
CAGE1-201ENST00000296742 RSF1Q96T23 1441 aaPredicted RBP20.47■□□□□ 0.87
CAGE1-201ENST00000296742 CECR2Q9BXF3 1484 aa20.4■□□□□ 0.86
CAGE1-201ENST00000296742 RB1CC1Q8TDY2 1594 aa20.39■□□□□ 0.85
CAGE1-201ENST00000296742 MROH2BQ7Z745 1585 aa20.24■□□□□ 0.83
CAGE1-201ENST00000296742 PABPN1Q86U42 306 aaKnown RBP eCLIP20.22■□□□□ 0.83
CAGE1-201ENST00000296742 PELP1Q8IZL8 1130 aaKnown RBP20.16■□□□□ 0.82
CAGE1-201ENST00000296742 LOC105371045A0A1W2PR82 267 aa20.14■□□□□ 0.81
CAGE1-201ENST00000296742 WIZO95785 1651 aa20.11■□□□□ 0.81
CAGE1-201ENST00000296742 UNC13AQ9UPW8 1703 aa20.09■□□□□ 0.81
CAGE1-201ENST00000296742 TRIM41Q8WV44 630 aa20.01■□□□□ 0.79
CAGE1-201ENST00000296742 FAM9AQ8IZU1 332 aaPredicted RBP19.98■□□□□ 0.79
CAGE1-201ENST00000296742 BAZ1AQ9NRL2 1556 aaPredicted RBP19.95■□□□□ 0.78
CAGE1-201ENST00000296742 EHMT2Q96KQ7 1210 aa19.94■□□□□ 0.78
CAGE1-201ENST00000296742 BICRAQ9NZM4 1560 aa19.88■□□□□ 0.77
CAGE1-201ENST00000296742 SMARCA4P51532 1647 aa19.85■□□□□ 0.77
CAGE1-201ENST00000296742 SCAF1Q9H7N4 1312 aaKnown RBP19.8■□□□□ 0.76
CAGE1-201ENST00000296742 TRIM26Q12899 539 aaPredicted RBP19.76■□□□□ 0.75
CAGE1-201ENST00000296742 CCDC88BA6NC98 1476 aa19.7■□□□□ 0.74
CAGE1-201ENST00000296742 TOP2AP11388 1531 aaKnown RBP19.69■□□□□ 0.74
CAGE1-201ENST00000296742 SMARCA2P51531 1590 aa19.61■□□□□ 0.73
CAGE1-201ENST00000296742 ZEB1P37275 1124 aaPredicted RBP19.59■□□□□ 0.73
CAGE1-201ENST00000296742 ABCC8Q09428 1581 aa19.58■□□□□ 0.73
CAGE1-201ENST00000296742 EIF4G1Q04637 1599 aaKnown RBP19.53■□□□□ 0.72
CAGE1-201ENST00000296742 ATAD2BQ9ULI0 1458 aa19.48■□□□□ 0.71
CAGE1-201ENST00000296742 BAZ1BQ9UIG0 1483 aaKnown RBP19.42■□□□□ 0.7
CAGE1-201ENST00000296742 PEG3Q9GZU2 1588 aa19.39■□□□□ 0.7
CAGE1-201ENST00000296742 MYT1Q01538 1121 aa19.36■□□□□ 0.69
CAGE1-201ENST00000296742 SOGA1O94964 1423 aa19.33■□□□□ 0.69
CAGE1-201ENST00000296742 ACIN1Q9UKV3 1341 aaKnown RBP19.29■□□□□ 0.68
CAGE1-201ENST00000296742 RUSC2Q8N2Y8 1516 aa19.28■□□□□ 0.68
CAGE1-201ENST00000296742 NEUROD1Q13562 356 aa19.26■□□□□ 0.67
CAGE1-201ENST00000296742 WRNQ14191 1432 aaPredicted RBP eCLIP19.24■□□□□ 0.67
CAGE1-201ENST00000296742 GTF3C3Q9Y5Q9 886 aa19.19■□□□□ 0.66
CAGE1-201ENST00000296742 CSRNP3Q8WYN3 585 aa19.17■□□□□ 0.66
CAGE1-201ENST00000296742 UBTFP17480 764 aaKnown RBP19.16■□□□□ 0.66
CAGE1-201ENST00000296742 TTBK1Q5TCY1 1321 aaPredicted RBP19.16■□□□□ 0.66
CAGE1-201ENST00000296742 SYNJ1O43426 1573 aa19.14■□□□□ 0.66
CAGE1-201ENST00000296742 NCAPD3P42695 1498 aa19.12■□□□□ 0.65
CAGE1-201ENST00000296742 CENPBP07199 599 aaPredicted RBP19.06■□□□□ 0.64
CAGE1-201ENST00000296742 RANGAP1P46060 587 aaPredicted RBP19.05■□□□□ 0.64
CAGE1-201ENST00000296742 HMGXB3Q12766 1538 aa19.03■□□□□ 0.64
CAGE1-201ENST00000296742 CEP162Q5TB80 1403 aa19.01■□□□□ 0.63
CAGE1-201ENST00000296742 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.01■□□□□ 0.63
CAGE1-201ENST00000296742 DIEXFQ68CQ4 756 aaKnown RBP18.97■□□□□ 0.63
CAGE1-201ENST00000296742 CCER1Q8TC90 406 aaPredicted RBP18.97■□□□□ 0.63
CAGE1-201ENST00000296742 EEA1Q15075 1411 aa18.97■□□□□ 0.63
CAGE1-201ENST00000296742 TNIKQ9UKE5 1360 aa18.95■□□□□ 0.62
CAGE1-201ENST00000296742 CC2D2AQ9P2K1 1620 aa18.91■□□□□ 0.62
CAGE1-201ENST00000296742 GOLGA3Q08378 1498 aa18.91■□□□□ 0.62
CAGE1-201ENST00000296742 CFTRP13569 1480 aa18.88■□□□□ 0.61
CAGE1-201ENST00000296742 TOP2BQ02880 1626 aa18.87■□□□□ 0.61
CAGE1-201ENST00000296742 RAPGEF2Q9Y4G8 1499 aa18.85■□□□□ 0.61
CAGE1-201ENST00000296742 CUX1P39880 1505 aa18.85■□□□□ 0.61
CAGE1-201ENST00000296742 CEP164Q9UPV0 1460 aa18.83■□□□□ 0.61
CAGE1-201ENST00000296742 DNAJC5BQ9UF47 199 aa18.79■□□□□ 0.6
CAGE1-201ENST00000296742 CADPSQ9ULU8 1353 aa18.79■□□□□ 0.6
CAGE1-201ENST00000296742 YTHDC1Q96MU7 727 aaKnown RBP18.77■□□□□ 0.6
CAGE1-201ENST00000296742 BIVM-ERCC5R4GMW8 1640 aa18.77■□□□□ 0.6
CAGE1-201ENST00000296742 CLIP1P30622 1438 aa18.74■□□□□ 0.59
CAGE1-201ENST00000296742 KIF21BO75037 1637 aa18.74■□□□□ 0.59
CAGE1-201ENST00000296742 NESP48681 1621 aa18.7■□□□□ 0.58
CAGE1-201ENST00000296742 KIF27Q86VH2 1401 aa18.66■□□□□ 0.58
CAGE1-201ENST00000296742 CUX2O14529 1486 aa18.62■□□□□ 0.57
CAGE1-201ENST00000296742 PRXQ9BXM0 1461 aa18.62■□□□□ 0.57
CAGE1-201ENST00000296742 FANCD2Q9BXW9 1451 aa18.62■□□□□ 0.57
CAGE1-201ENST00000296742 FGD5Q6ZNL6 1462 aa18.59■□□□□ 0.57
CAGE1-201ENST00000296742 APLP2Q06481 763 aa18.58■□□□□ 0.57
CAGE1-201ENST00000296742 PRDM2Q13029 1718 aa18.57■□□□□ 0.56
CAGE1-201ENST00000296742 ZNF316A6NFI3 1004 aaPredicted RBP18.56■□□□□ 0.56
CAGE1-201ENST00000296742 VPS8Q8N3P4 1428 aa18.56■□□□□ 0.56
CAGE1-201ENST00000296742 HNRNPUL2Q1KMD3 747 aaKnown RBP18.55■□□□□ 0.56
CAGE1-201ENST00000296742 IGF1RP08069 1367 aa18.54■□□□□ 0.56
CAGE1-201ENST00000296742 RAD54L2Q9Y4B4 1467 aa18.52■□□□□ 0.56
CAGE1-201ENST00000296742 ERICH3Q5RHP9 1530 aa18.5■□□□□ 0.55
CAGE1-201ENST00000296742 MIER1Q8N108 512 aa18.48■□□□□ 0.55
CAGE1-201ENST00000296742 CARMIL1Q5VZK9 1371 aa18.46■□□□□ 0.55
CAGE1-201ENST00000296742 ARAP1Q96P48 1450 aa18.45■□□□□ 0.54
CAGE1-201ENST00000296742 KANK4Q5T7N3 995 aaPredicted RBP18.44■□□□□ 0.54
CAGE1-201ENST00000296742 P3H3Q8IVL6 736 aa18.44■□□□□ 0.54
CAGE1-201ENST00000296742 TOPBP1Q92547 1522 aa18.43■□□□□ 0.54
CAGE1-201ENST00000296742 POLA1P09884 1462 aaPredicted RBP18.42■□□□□ 0.54
CAGE1-201ENST00000296742 DNMBPQ6XZF7 1577 aa18.38■□□□□ 0.53
CAGE1-201ENST00000296742 ARHGAP35Q9NRY4 1499 aa18.37■□□□□ 0.53
CAGE1-201ENST00000296742 URB2Q14146 1524 aaKnown RBP18.37■□□□□ 0.53
CAGE1-201ENST00000296742 TDRD9Q8NDG6 1382 aaKnown RBP18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms