RNA–Protein interactions for RNA: ENST00000281821.6

EPHA4-201, Transcript of EPH receptor A4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene EPHA4, Length 6,346 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-201ENST00000281821 NISCHQ9Y2I1 1504 aa16.05■□□□□ 0.16
EPHA4-201ENST00000281821 DCAF8L2P0C7V8 631 aa14.3□□□□□ -0.12
EPHA4-201ENST00000281821 CCDC180Q9P1Z9 1646 aa13.93□□□□□ -0.18
EPHA4-201ENST00000281821 ABCC9O60706 1549 aa13.62□□□□□ -0.23
EPHA4-201ENST00000281821 ZCCHC6Q5VYS8 1495 aaKnown RBP13.36□□□□□ -0.27
EPHA4-201ENST00000281821 NACADO15069 1562 aa13.34□□□□□ -0.27
EPHA4-201ENST00000281821 DCAF1Q9Y4B6 1507 aa13.33□□□□□ -0.28
EPHA4-201ENST00000281821 RB1CC1Q8TDY2 1594 aa13.32□□□□□ -0.28
EPHA4-201ENST00000281821 SHROOM4Q9ULL8 1493 aa13.3□□□□□ -0.28
EPHA4-201ENST00000281821 MYO15BQ96JP2 1530 aa13.29□□□□□ -0.28
EPHA4-201ENST00000281821 SUPT5HO00267 1087 aaKnown RBP13.14□□□□□ -0.31
EPHA4-201ENST00000281821 PABPN1Q86U42 306 aaKnown RBP eCLIP12.94□□□□□ -0.34
EPHA4-201ENST00000281821 SCRIBQ14160 1630 aa12.9□□□□□ -0.35
EPHA4-201ENST00000281821 FAM9AQ8IZU1 332 aaPredicted RBP12.82□□□□□ -0.36
EPHA4-201ENST00000281821 BAZ1AQ9NRL2 1556 aaPredicted RBP12.64□□□□□ -0.39
EPHA4-201ENST00000281821 TRIM41Q8WV44 630 aa12.55□□□□□ -0.4
EPHA4-201ENST00000281821 SMARCA2P51531 1590 aa12.52□□□□□ -0.41
EPHA4-201ENST00000281821 BAZ1BQ9UIG0 1483 aaKnown RBP12.48□□□□□ -0.41
EPHA4-201ENST00000281821 RSF1Q96T23 1441 aaPredicted RBP12.43□□□□□ -0.42
EPHA4-201ENST00000281821 APLP2Q06481 763 aa12.39□□□□□ -0.43
EPHA4-201ENST00000281821 NCAPD3P42695 1498 aa12.29□□□□□ -0.44
EPHA4-201ENST00000281821 CECR2Q9BXF3 1484 aa12.29□□□□□ -0.44
EPHA4-201ENST00000281821 PDS5BQ9NTI5 1447 aa12.28□□□□□ -0.44
EPHA4-201ENST00000281821 ATAD2BQ9ULI0 1458 aa12.27□□□□□ -0.44
EPHA4-201ENST00000281821 SMARCA4P51532 1647 aa12.22□□□□□ -0.45
EPHA4-201ENST00000281821 EIF4G1Q04637 1599 aaKnown RBP12.21□□□□□ -0.45
EPHA4-201ENST00000281821 UBTFP17480 764 aaKnown RBP12.2□□□□□ -0.46
EPHA4-201ENST00000281821 MROH2BQ7Z745 1585 aa12.2□□□□□ -0.46
EPHA4-201ENST00000281821 TOP2AP11388 1531 aaKnown RBP12.19□□□□□ -0.46
EPHA4-201ENST00000281821 CADPSQ9ULU8 1353 aa12.17□□□□□ -0.46
EPHA4-201ENST00000281821 CHIC1Q5VXU3 224 aa12.17□□□□□ -0.46
EPHA4-201ENST00000281821 ERCC6Q03468 1493 aa12.17□□□□□ -0.46
EPHA4-201ENST00000281821 HMGXB3Q12766 1538 aa12.16□□□□□ -0.46
EPHA4-201ENST00000281821 EEA1Q15075 1411 aa12.15□□□□□ -0.46
EPHA4-201ENST00000281821 BICRAQ9NZM4 1560 aa12.14□□□□□ -0.47
EPHA4-201ENST00000281821 ABCC8Q09428 1581 aa12.13□□□□□ -0.47
EPHA4-201ENST00000281821 WRNQ14191 1432 aaPredicted RBP eCLIP12.07□□□□□ -0.48
EPHA4-201ENST00000281821 CSRNP3Q8WYN3 585 aa12.04□□□□□ -0.48
EPHA4-201ENST00000281821 CCDC88BA6NC98 1476 aa12.01□□□□□ -0.49
EPHA4-201ENST00000281821 PEG3Q9GZU2 1588 aa11.99□□□□□ -0.49
EPHA4-201ENST00000281821 KIF27Q86VH2 1401 aa11.99□□□□□ -0.49
EPHA4-201ENST00000281821 CC2D2AQ9P2K1 1620 aa11.98□□□□□ -0.49
EPHA4-201ENST00000281821 CEP164Q9UPV0 1460 aa11.98□□□□□ -0.49
EPHA4-201ENST00000281821 FBLN2P98095 1184 aa11.94□□□□□ -0.5
EPHA4-201ENST00000281821 CHMP7Q8WUX9 453 aaPredicted RBP11.93□□□□□ -0.5
EPHA4-201ENST00000281821 CDK11AQ9UQ88 783 aaPredicted RBP11.91□□□□□ -0.5
EPHA4-201ENST00000281821 CFTRP13569 1480 aa11.91□□□□□ -0.5
EPHA4-201ENST00000281821 WIZO95785 1651 aa11.9□□□□□ -0.5
EPHA4-201ENST00000281821 FANCD2Q9BXW9 1451 aa11.9□□□□□ -0.5
EPHA4-201ENST00000281821 ATP1B4Q9UN42 357 aaPredicted RBP11.89□□□□□ -0.51
EPHA4-201ENST00000281821 EHMT2Q96KQ7 1210 aa11.88□□□□□ -0.51
EPHA4-201ENST00000281821 NPM1P06748 294 aaKnown RBP eCLIP11.86□□□□□ -0.51
EPHA4-201ENST00000281821 LAMC3Q9Y6N6 1575 aa11.85□□□□□ -0.51
EPHA4-201ENST00000281821 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.85□□□□□ -0.51
EPHA4-201ENST00000281821 HNRNPUL2Q1KMD3 747 aaKnown RBP11.85□□□□□ -0.51
EPHA4-201ENST00000281821 SOGA1O94964 1423 aa11.83□□□□□ -0.52
EPHA4-201ENST00000281821 RANGAP1P46060 587 aaPredicted RBP11.82□□□□□ -0.52
EPHA4-201ENST00000281821 UNC13AQ9UPW8 1703 aa11.81□□□□□ -0.52
EPHA4-201ENST00000281821 MRC2Q9UBG0 1479 aa11.79□□□□□ -0.52
EPHA4-201ENST00000281821 CUX2O14529 1486 aa11.78□□□□□ -0.52
EPHA4-201ENST00000281821 GOLGA3Q08378 1498 aa11.76□□□□□ -0.53
EPHA4-201ENST00000281821 IFT140Q96RY7 1462 aa11.73□□□□□ -0.53
EPHA4-201ENST00000281821 CARMIL1Q5VZK9 1371 aa11.73□□□□□ -0.53
EPHA4-201ENST00000281821 ACIN1Q9UKV3 1341 aaKnown RBP11.71□□□□□ -0.53
EPHA4-201ENST00000281821 CARMIL2Q6F5E8 1435 aa11.71□□□□□ -0.53
EPHA4-201ENST00000281821 DNAJC5BQ9UF47 199 aa11.69□□□□□ -0.54
EPHA4-201ENST00000281821 TNIKQ9UKE5 1360 aa11.66□□□□□ -0.54
EPHA4-201ENST00000281821 TDRD9Q8NDG6 1382 aaKnown RBP11.64□□□□□ -0.55
EPHA4-201ENST00000281821 DNMBPQ6XZF7 1577 aa11.63□□□□□ -0.55
EPHA4-201ENST00000281821 FHAD1B1AJZ9 1412 aa11.63□□□□□ -0.55
EPHA4-201ENST00000281821 GRIN2BQ13224 1484 aa11.63□□□□□ -0.55
EPHA4-201ENST00000281821 TTBK1Q5TCY1 1321 aaPredicted RBP11.62□□□□□ -0.55
EPHA4-201ENST00000281821 FGD5Q6ZNL6 1462 aa11.62□□□□□ -0.55
EPHA4-201ENST00000281821 OSCARQ8IYS5 282 aa11.62□□□□□ -0.55
EPHA4-201ENST00000281821 CLIP1P30622 1438 aa11.61□□□□□ -0.55
EPHA4-201ENST00000281821 RAPGEF2Q9Y4G8 1499 aa11.61□□□□□ -0.55
EPHA4-201ENST00000281821 GAPVD1Q14C86 1478 aa11.61□□□□□ -0.55
EPHA4-201ENST00000281821 MYT1LQ9UL68 1186 aa11.61□□□□□ -0.55
EPHA4-201ENST00000281821 TOPBP1Q92547 1522 aa11.6□□□□□ -0.55
EPHA4-201ENST00000281821 PLEKHD1A6NEE1 506 aa11.57□□□□□ -0.56
EPHA4-201ENST00000281821 ZEB1P37275 1124 aaPredicted RBP11.57□□□□□ -0.56
EPHA4-201ENST00000281821 LOC105371045A0A1W2PR82 267 aa11.56□□□□□ -0.56
EPHA4-201ENST00000281821 NESP48681 1621 aa11.56□□□□□ -0.56
EPHA4-201ENST00000281821 FMN1Q68DA7 1419 aa11.54□□□□□ -0.56
EPHA4-201ENST00000281821 TRIM26Q12899 539 aaPredicted RBP11.52□□□□□ -0.56
EPHA4-201ENST00000281821 ABCA10Q8WWZ4 1543 aa11.52□□□□□ -0.57
EPHA4-201ENST00000281821 POLA1P09884 1462 aaPredicted RBP11.52□□□□□ -0.57
EPHA4-201ENST00000281821 TOP2BQ02880 1626 aa11.52□□□□□ -0.57
EPHA4-201ENST00000281821 MTUS2Q5JR59 1369 aa11.51□□□□□ -0.57
EPHA4-201ENST00000281821 IGF1RP08069 1367 aa11.49□□□□□ -0.57
EPHA4-201ENST00000281821 MAGI1Q96QZ7 1491 aaPredicted RBP11.49□□□□□ -0.57
EPHA4-201ENST00000281821 P3H3Q8IVL6 736 aa11.49□□□□□ -0.57
EPHA4-201ENST00000281821 JPH4Q96JJ6 628 aa11.47□□□□□ -0.57
EPHA4-201ENST00000281821 CEP162Q5TB80 1403 aa11.46□□□□□ -0.57
EPHA4-201ENST00000281821 WDR97A6NE52 1622 aa11.44□□□□□ -0.58
EPHA4-201ENST00000281821 ERICH3Q5RHP9 1530 aa11.44□□□□□ -0.58
EPHA4-201ENST00000281821 RAD54L2Q9Y4B4 1467 aa11.43□□□□□ -0.58
EPHA4-201ENST00000281821 TSPY4P0CV99 314 aa11.43□□□□□ -0.58
EPHA4-201ENST00000281821 TSPY10P0CW01 314 aa11.43□□□□□ -0.58
EPHA4-201ENST00000281821 CUX1P39880 1505 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 164.4 ms