RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 NISCHQ9Y2I1 1504 aa18.34■□□□□ 0.53
MSH4-201ENST00000263187 CCDC180Q9P1Z9 1646 aa16.31■□□□□ 0.2
MSH4-201ENST00000263187 SHROOM4Q9ULL8 1493 aa16.21■□□□□ 0.19
MSH4-201ENST00000263187 SUPT5HO00267 1087 aaKnown RBP15.97■□□□□ 0.15
MSH4-201ENST00000263187 DCAF8L2P0C7V8 631 aa15.78■□□□□ 0.12
MSH4-201ENST00000263187 ABCC9O60706 1549 aa15.49■□□□□ 0.07
MSH4-201ENST00000263187 ZCCHC6Q5VYS8 1495 aaKnown RBP15.37■□□□□ 0.05
MSH4-201ENST00000263187 CHIC1Q5VXU3 224 aa15.33■□□□□ 0.04
MSH4-201ENST00000263187 MYO15BQ96JP2 1530 aa15.3■□□□□ 0.04
MSH4-201ENST00000263187 DCAF1Q9Y4B6 1507 aa15.27■□□□□ 0.04
MSH4-201ENST00000263187 PCGF6Q9BYE7 350 aa15.22■□□□□ 0.03
MSH4-201ENST00000263187 NACADO15069 1562 aa15.19■□□□□ 0.02
MSH4-201ENST00000263187 LOC105371045A0A1W2PR82 267 aa15.12■□□□□ 0.01
MSH4-201ENST00000263187 RB1CC1Q8TDY2 1594 aa15.12■□□□□ 0.01
MSH4-201ENST00000263187 HRCP23327 699 aa15.07■□□□□ 0
MSH4-201ENST00000263187 PPARGC1BQ86YN6 1023 aaKnown RBP15.05■□□□□ -0
MSH4-201ENST00000263187 EHMT2Q96KQ7 1210 aa14.95□□□□□ -0.02
MSH4-201ENST00000263187 UNC13AQ9UPW8 1703 aa14.95□□□□□ -0.02
MSH4-201ENST00000263187 FAM9AQ8IZU1 332 aaPredicted RBP14.85□□□□□ -0.03
MSH4-201ENST00000263187 SCRIBQ14160 1630 aa14.76□□□□□ -0.05
MSH4-201ENST00000263187 BICRAQ9NZM4 1560 aa14.74□□□□□ -0.05
MSH4-201ENST00000263187 TRIM41Q8WV44 630 aa14.69□□□□□ -0.06
MSH4-201ENST00000263187 TRIM26Q12899 539 aaPredicted RBP14.63□□□□□ -0.07
MSH4-201ENST00000263187 RSF1Q96T23 1441 aaPredicted RBP14.57□□□□□ -0.08
MSH4-201ENST00000263187 TTBK1Q5TCY1 1321 aaPredicted RBP14.45□□□□□ -0.1
MSH4-201ENST00000263187 PABPN1Q86U42 306 aaKnown RBP eCLIP14.43□□□□□ -0.1
MSH4-201ENST00000263187 CECR2Q9BXF3 1484 aa14.41□□□□□ -0.1
MSH4-201ENST00000263187 MROH2BQ7Z745 1585 aa14.29□□□□□ -0.12
MSH4-201ENST00000263187 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.28□□□□□ -0.12
MSH4-201ENST00000263187 EIF4G1Q04637 1599 aaKnown RBP14.27□□□□□ -0.13
MSH4-201ENST00000263187 ZEB1P37275 1124 aaPredicted RBP14.24□□□□□ -0.13
MSH4-201ENST00000263187 SMARCA4P51532 1647 aa14.21□□□□□ -0.13
MSH4-201ENST00000263187 WIZO95785 1651 aa14.21□□□□□ -0.13
MSH4-201ENST00000263187 BAZ1AQ9NRL2 1556 aaPredicted RBP14.19□□□□□ -0.14
MSH4-201ENST00000263187 CCER1Q8TC90 406 aaPredicted RBP14.18□□□□□ -0.14
MSH4-201ENST00000263187 CC2D2AQ9P2K1 1620 aa14.15□□□□□ -0.14
MSH4-201ENST00000263187 PEG3Q9GZU2 1588 aa14.14□□□□□ -0.15
MSH4-201ENST00000263187 SCAF1Q9H7N4 1312 aaKnown RBP14.09□□□□□ -0.15
MSH4-201ENST00000263187 ABCC8Q09428 1581 aa14.06□□□□□ -0.16
MSH4-201ENST00000263187 UBTFP17480 764 aaKnown RBP14.06□□□□□ -0.16
MSH4-201ENST00000263187 RANGAP1P46060 587 aaPredicted RBP14.05□□□□□ -0.16
MSH4-201ENST00000263187 SMARCA2P51531 1590 aa14.02□□□□□ -0.16
MSH4-201ENST00000263187 CCDC88BA6NC98 1476 aa14.02□□□□□ -0.17
MSH4-201ENST00000263187 ATAD2BQ9ULI0 1458 aa14.01□□□□□ -0.17
MSH4-201ENST00000263187 DNAJC5BQ9UF47 199 aa14□□□□□ -0.17
MSH4-201ENST00000263187 HMGXB3Q12766 1538 aa14□□□□□ -0.17
MSH4-201ENST00000263187 SOGA1O94964 1423 aa13.99□□□□□ -0.17
MSH4-201ENST00000263187 NCAPD3P42695 1498 aa13.99□□□□□ -0.17
MSH4-201ENST00000263187 RUSC2Q8N2Y8 1516 aa13.93□□□□□ -0.18
MSH4-201ENST00000263187 DIEXFQ68CQ4 756 aaKnown RBP13.91□□□□□ -0.18
MSH4-201ENST00000263187 NEUROD1Q13562 356 aa13.9□□□□□ -0.18
MSH4-201ENST00000263187 HNRNPUL2Q1KMD3 747 aaKnown RBP13.9□□□□□ -0.18
MSH4-201ENST00000263187 CSRNP3Q8WYN3 585 aa13.9□□□□□ -0.18
MSH4-201ENST00000263187 CEP162Q5TB80 1403 aa13.9□□□□□ -0.18
MSH4-201ENST00000263187 TOP2AP11388 1531 aaKnown RBP13.88□□□□□ -0.19
MSH4-201ENST00000263187 BAZ1BQ9UIG0 1483 aaKnown RBP13.87□□□□□ -0.19
MSH4-201ENST00000263187 YTHDC1Q96MU7 727 aaKnown RBP13.86□□□□□ -0.19
MSH4-201ENST00000263187 ACIN1Q9UKV3 1341 aaKnown RBP13.82□□□□□ -0.2
MSH4-201ENST00000263187 GTF3C3Q9Y5Q9 886 aa13.79□□□□□ -0.2
MSH4-201ENST00000263187 TNIKQ9UKE5 1360 aa13.76□□□□□ -0.21
MSH4-201ENST00000263187 WRNQ14191 1432 aaPredicted RBP eCLIP13.7□□□□□ -0.22
MSH4-201ENST00000263187 APLP2Q06481 763 aa13.7□□□□□ -0.22
MSH4-201ENST00000263187 CENPBP07199 599 aaPredicted RBP13.7□□□□□ -0.22
MSH4-201ENST00000263187 ZNF316A6NFI3 1004 aaPredicted RBP13.69□□□□□ -0.22
MSH4-201ENST00000263187 GOLGA3Q08378 1498 aa13.66□□□□□ -0.22
MSH4-201ENST00000263187 PRDM2Q13029 1718 aa13.65□□□□□ -0.22
MSH4-201ENST00000263187 MIER1Q8N108 512 aa13.65□□□□□ -0.23
MSH4-201ENST00000263187 CLIP1P30622 1438 aa13.63□□□□□ -0.23
MSH4-201ENST00000263187 PELP1Q8IZL8 1130 aaKnown RBP13.62□□□□□ -0.23
MSH4-201ENST00000263187 LAMC3Q9Y6N6 1575 aa13.61□□□□□ -0.23
MSH4-201ENST00000263187 EEA1Q15075 1411 aa13.6□□□□□ -0.23
MSH4-201ENST00000263187 SYNJ1O43426 1573 aa13.59□□□□□ -0.23
MSH4-201ENST00000263187 ITGAEP38570 1179 aa13.58□□□□□ -0.24
MSH4-201ENST00000263187 RAPGEF2Q9Y4G8 1499 aa13.58□□□□□ -0.24
MSH4-201ENST00000263187 CFTRP13569 1480 aa13.57□□□□□ -0.24
MSH4-201ENST00000263187 CEP164Q9UPV0 1460 aa13.55□□□□□ -0.24
MSH4-201ENST00000263187 NESP48681 1621 aa13.53□□□□□ -0.24
MSH4-201ENST00000263187 CADPSQ9ULU8 1353 aa13.52□□□□□ -0.24
MSH4-201ENST00000263187 KANK4Q5T7N3 995 aaPredicted RBP13.51□□□□□ -0.25
MSH4-201ENST00000263187 KIF21AQ7Z4S6 1674 aa13.5□□□□□ -0.25
MSH4-201ENST00000263187 VPS8Q8N3P4 1428 aa13.49□□□□□ -0.25
MSH4-201ENST00000263187 KIF21BO75037 1637 aa13.42□□□□□ -0.26
MSH4-201ENST00000263187 THOC2Q8NI27 1593 aaKnown RBP13.41□□□□□ -0.26
MSH4-201ENST00000263187 ATP1B4Q9UN42 357 aaPredicted RBP13.41□□□□□ -0.26
MSH4-201ENST00000263187 PDS5BQ9NTI5 1447 aa13.39□□□□□ -0.27
MSH4-201ENST00000263187 FANCD2Q9BXW9 1451 aa13.38□□□□□ -0.27
MSH4-201ENST00000263187 P3H3Q8IVL6 736 aa13.37□□□□□ -0.27
MSH4-201ENST00000263187 DHX57Q6P158 1386 aaKnown RBP13.33□□□□□ -0.28
MSH4-201ENST00000263187 WDR62O43379 1518 aa13.33□□□□□ -0.28
MSH4-201ENST00000263187 ARAP1Q96P48 1450 aa13.31□□□□□ -0.28
MSH4-201ENST00000263187 MRC2Q9UBG0 1479 aa13.3□□□□□ -0.28
MSH4-201ENST00000263187 KCNH8Q96L42 1107 aa13.3□□□□□ -0.28
MSH4-201ENST00000263187 ERCC6Q03468 1493 aa13.29□□□□□ -0.28
MSH4-201ENST00000263187 URB2Q14146 1524 aaKnown RBP13.29□□□□□ -0.28
MSH4-201ENST00000263187 TOP2BQ02880 1626 aa13.28□□□□□ -0.28
MSH4-201ENST00000263187 FAM50AQ14320 339 aaKnown RBP13.28□□□□□ -0.28
MSH4-201ENST00000263187 HIRIP3Q9BW71 556 aaPredicted RBP13.28□□□□□ -0.28
MSH4-201ENST00000263187 BIVM-ERCC5R4GMW8 1640 aa13.28□□□□□ -0.28
MSH4-201ENST00000263187 DNMBPQ6XZF7 1577 aa13.27□□□□□ -0.28
MSH4-201ENST00000263187 PRXQ9BXM0 1461 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms