RNA–Protein interactions for RNA: ENST00000046640.7

CTNS-201, Transcript of cystinosin, lysosomal cystine transporter, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTNS, Length 2,866 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNS-201ENST00000046640 NISCHQ9Y2I1 1504 aa27.47■■□□□ 1.99
CTNS-201ENST00000046640 SHROOM4Q9ULL8 1493 aa23.65■■□□□ 1.38
CTNS-201ENST00000046640 DCAF8L2P0C7V8 631 aa23.32■■□□□ 1.32
CTNS-201ENST00000046640 CCDC180Q9P1Z9 1646 aa23.26■■□□□ 1.31
CTNS-201ENST00000046640 ZCCHC6Q5VYS8 1495 aaKnown RBP23.15■■□□□ 1.3
CTNS-201ENST00000046640 SUPT5HO00267 1087 aaKnown RBP23.11■■□□□ 1.29
CTNS-201ENST00000046640 DCAF1Q9Y4B6 1507 aa22.36■■□□□ 1.17
CTNS-201ENST00000046640 CHIC1Q5VXU3 224 aa22.19■■□□□ 1.14
CTNS-201ENST00000046640 ABCC9O60706 1549 aa22.12■■□□□ 1.13
CTNS-201ENST00000046640 SCRIBQ14160 1630 aa22.06■■□□□ 1.12
CTNS-201ENST00000046640 MYO15BQ96JP2 1530 aa22.02■■□□□ 1.12
CTNS-201ENST00000046640 RSF1Q96T23 1441 aaPredicted RBP21.74■■□□□ 1.07
CTNS-201ENST00000046640 LOC105371045A0A1W2PR82 267 aa21.69■■□□□ 1.06
CTNS-201ENST00000046640 NACADO15069 1562 aa21.65■■□□□ 1.06
CTNS-201ENST00000046640 CECR2Q9BXF3 1484 aa21.58■■□□□ 1.05
CTNS-201ENST00000046640 PCGF6Q9BYE7 350 aa21.54■■□□□ 1.04
CTNS-201ENST00000046640 HRCP23327 699 aa21.48■■□□□ 1.03
CTNS-201ENST00000046640 RB1CC1Q8TDY2 1594 aa21.47■■□□□ 1.03
CTNS-201ENST00000046640 TRIM41Q8WV44 630 aa21.43■■□□□ 1.02
CTNS-201ENST00000046640 MROH2BQ7Z745 1585 aa21.43■■□□□ 1.02
CTNS-201ENST00000046640 FAM9AQ8IZU1 332 aaPredicted RBP21.42■■□□□ 1.02
CTNS-201ENST00000046640 EHMT2Q96KQ7 1210 aa21.4■■□□□ 1.02
CTNS-201ENST00000046640 PPARGC1BQ86YN6 1023 aaKnown RBP21.32■■□□□ 1
CTNS-201ENST00000046640 WIZO95785 1651 aa21.29■■□□□ 1
CTNS-201ENST00000046640 PABPN1Q86U42 306 aaKnown RBP eCLIP21.25■□□□□ 0.99
CTNS-201ENST00000046640 BAZ1AQ9NRL2 1556 aaPredicted RBP21.08■□□□□ 0.97
CTNS-201ENST00000046640 UNC13AQ9UPW8 1703 aa21.04■□□□□ 0.96
CTNS-201ENST00000046640 SMARCA4P51532 1647 aa20.94■□□□□ 0.94
CTNS-201ENST00000046640 TRIM26Q12899 539 aaPredicted RBP20.91■□□□□ 0.94
CTNS-201ENST00000046640 CCDC88BA6NC98 1476 aa20.88■□□□□ 0.93
CTNS-201ENST00000046640 TOP2AP11388 1531 aaKnown RBP20.85■□□□□ 0.93
CTNS-201ENST00000046640 BICRAQ9NZM4 1560 aa20.83■□□□□ 0.93
CTNS-201ENST00000046640 ABCC8Q09428 1581 aa20.82■□□□□ 0.92
CTNS-201ENST00000046640 SMARCA2P51531 1590 aa20.77■□□□□ 0.92
CTNS-201ENST00000046640 EIF4G1Q04637 1599 aaKnown RBP20.73■□□□□ 0.91
CTNS-201ENST00000046640 TTBK1Q5TCY1 1321 aaPredicted RBP20.61■□□□□ 0.89
CTNS-201ENST00000046640 SOGA1O94964 1423 aa20.61■□□□□ 0.89
CTNS-201ENST00000046640 RUSC2Q8N2Y8 1516 aa20.53■□□□□ 0.88
CTNS-201ENST00000046640 ATAD2BQ9ULI0 1458 aa20.52■□□□□ 0.87
CTNS-201ENST00000046640 UBTFP17480 764 aaKnown RBP20.5■□□□□ 0.87
CTNS-201ENST00000046640 BAZ1BQ9UIG0 1483 aaKnown RBP20.48■□□□□ 0.87
CTNS-201ENST00000046640 CSRNP3Q8WYN3 585 aa20.47■□□□□ 0.87
CTNS-201ENST00000046640 WRNQ14191 1432 aaPredicted RBP eCLIP20.44■□□□□ 0.86
CTNS-201ENST00000046640 PEG3Q9GZU2 1588 aa20.43■□□□□ 0.86
CTNS-201ENST00000046640 RANGAP1P46060 587 aaPredicted RBP20.36■□□□□ 0.85
CTNS-201ENST00000046640 CEP162Q5TB80 1403 aa20.36■□□□□ 0.85
CTNS-201ENST00000046640 ZEB1P37275 1124 aaPredicted RBP20.34■□□□□ 0.85
CTNS-201ENST00000046640 SYNJ1O43426 1573 aa20.31■□□□□ 0.84
CTNS-201ENST00000046640 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.29■□□□□ 0.84
CTNS-201ENST00000046640 TNIKQ9UKE5 1360 aa20.27■□□□□ 0.84
CTNS-201ENST00000046640 EEA1Q15075 1411 aa20.24■□□□□ 0.83
CTNS-201ENST00000046640 GOLGA3Q08378 1498 aa20.19■□□□□ 0.82
CTNS-201ENST00000046640 CCER1Q8TC90 406 aaPredicted RBP20.18■□□□□ 0.82
CTNS-201ENST00000046640 NCAPD3P42695 1498 aa20.1■□□□□ 0.81
CTNS-201ENST00000046640 CEP164Q9UPV0 1460 aa20.08■□□□□ 0.81
CTNS-201ENST00000046640 SCAF1Q9H7N4 1312 aaKnown RBP20.08■□□□□ 0.81
CTNS-201ENST00000046640 RAPGEF2Q9Y4G8 1499 aa20.08■□□□□ 0.8
CTNS-201ENST00000046640 CLIP1P30622 1438 aa20.03■□□□□ 0.8
CTNS-201ENST00000046640 PELP1Q8IZL8 1130 aaKnown RBP20.02■□□□□ 0.8
CTNS-201ENST00000046640 HMGXB3Q12766 1538 aa20■□□□□ 0.79
CTNS-201ENST00000046640 TOP2BQ02880 1626 aa19.99■□□□□ 0.79
CTNS-201ENST00000046640 HNRNPUL2Q1KMD3 747 aaKnown RBP19.97■□□□□ 0.79
CTNS-201ENST00000046640 KIF21BO75037 1637 aa19.96■□□□□ 0.79
CTNS-201ENST00000046640 APLP2Q06481 763 aa19.95■□□□□ 0.78
CTNS-201ENST00000046640 CUX1P39880 1505 aa19.93■□□□□ 0.78
CTNS-201ENST00000046640 CFTRP13569 1480 aa19.9■□□□□ 0.78
CTNS-201ENST00000046640 BIVM-ERCC5R4GMW8 1640 aa19.87■□□□□ 0.77
CTNS-201ENST00000046640 VPS8Q8N3P4 1428 aa19.85■□□□□ 0.77
CTNS-201ENST00000046640 KIF27Q86VH2 1401 aa19.81■□□□□ 0.76
CTNS-201ENST00000046640 PRXQ9BXM0 1461 aa19.79■□□□□ 0.76
CTNS-201ENST00000046640 CADPSQ9ULU8 1353 aa19.79■□□□□ 0.76
CTNS-201ENST00000046640 NEUROD1Q13562 356 aa19.78■□□□□ 0.76
CTNS-201ENST00000046640 DIEXFQ68CQ4 756 aaKnown RBP19.77■□□□□ 0.76
CTNS-201ENST00000046640 CC2D2AQ9P2K1 1620 aa19.77■□□□□ 0.76
CTNS-201ENST00000046640 CUX2O14529 1486 aa19.73■□□□□ 0.75
CTNS-201ENST00000046640 KANK4Q5T7N3 995 aaPredicted RBP19.73■□□□□ 0.75
CTNS-201ENST00000046640 ACIN1Q9UKV3 1341 aaKnown RBP19.72■□□□□ 0.75
CTNS-201ENST00000046640 ERICH3Q5RHP9 1530 aa19.68■□□□□ 0.74
CTNS-201ENST00000046640 ARAP1Q96P48 1450 aa19.67■□□□□ 0.74
CTNS-201ENST00000046640 IGF1RP08069 1367 aa19.65■□□□□ 0.74
CTNS-201ENST00000046640 FGD5Q6ZNL6 1462 aa19.64■□□□□ 0.74
CTNS-201ENST00000046640 DNAJC5BQ9UF47 199 aa19.64■□□□□ 0.73
CTNS-201ENST00000046640 GTF3C3Q9Y5Q9 886 aa19.64■□□□□ 0.73
CTNS-201ENST00000046640 NESP48681 1621 aa19.63■□□□□ 0.73
CTNS-201ENST00000046640 P3H3Q8IVL6 736 aa19.62■□□□□ 0.73
CTNS-201ENST00000046640 FANCD2Q9BXW9 1451 aa19.6■□□□□ 0.73
CTNS-201ENST00000046640 ITGAEP38570 1179 aa19.6■□□□□ 0.73
CTNS-201ENST00000046640 YTHDC1Q96MU7 727 aaKnown RBP19.59■□□□□ 0.73
CTNS-201ENST00000046640 CARMIL1Q5VZK9 1371 aa19.59■□□□□ 0.73
CTNS-201ENST00000046640 ATP1B4Q9UN42 357 aaPredicted RBP19.58■□□□□ 0.72
CTNS-201ENST00000046640 ARHGAP35Q9NRY4 1499 aa19.56■□□□□ 0.72
CTNS-201ENST00000046640 RAD54L2Q9Y4B4 1467 aa19.56■□□□□ 0.72
CTNS-201ENST00000046640 CENPBP07199 599 aaPredicted RBP19.55■□□□□ 0.72
CTNS-201ENST00000046640 PRDM2Q13029 1718 aa19.53■□□□□ 0.72
CTNS-201ENST00000046640 ZNF316A6NFI3 1004 aaPredicted RBP19.47■□□□□ 0.71
CTNS-201ENST00000046640 TOPBP1Q92547 1522 aa19.42■□□□□ 0.7
CTNS-201ENST00000046640 POLA1P09884 1462 aaPredicted RBP19.42■□□□□ 0.7
CTNS-201ENST00000046640 TDRD9Q8NDG6 1382 aaKnown RBP19.39■□□□□ 0.69
CTNS-201ENST00000046640 DNMBPQ6XZF7 1577 aa19.37■□□□□ 0.69
CTNS-201ENST00000046640 MIER1Q8N108 512 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms