RNA–Protein interactions for RNA: ENSMUST00000109024.8

Lima1-202, Transcript of LIM domain and actin-binding protein 1, mousemouse

APPRIS P3 TSL 1 (best) BASIC

Gene Lima1, Length 4,109 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1-202ENSMUST00000109024 Rhox8Q6VSS7 320 aa17.26■□□□□ 0.35
Lima1-202ENSMUST00000109024 NischQ80TM9 1593 aa16.31■□□□□ 0.2
Lima1-202ENSMUST00000109024 Rpgrip1Q9EPQ2 1331 aa15.99■□□□□ 0.15
Lima1-202ENSMUST00000109024 Ehmt2Q9Z148 1263 aaKnown RBP15.92■□□□□ 0.14
Lima1-202ENSMUST00000109024 Ccdc136Q3TVA9 1136 aa15.67■□□□□ 0.1
Lima1-202ENSMUST00000109024 Abcc9P70170 1546 aa15.47■□□□□ 0.07
Lima1-202ENSMUST00000109024 Acin1Q9JIX8 1338 aaKnown RBP15.34■□□□□ 0.05
Lima1-202ENSMUST00000109024 Ccdc180J3QNE4 1664 aa15.31■□□□□ 0.04
Lima1-202ENSMUST00000109024 Trim41Q5NCC3 630 aa15.3■□□□□ 0.04
Lima1-202ENSMUST00000109024 Rtl1Q7M732 1744 aa15.2■□□□□ 0.02
Lima1-202ENSMUST00000109024 Cngb1E1AZ71 1325 aa15.17■□□□□ 0.02
Lima1-202ENSMUST00000109024 Gab3Q8BSM5 595 aa15.16■□□□□ 0.02
Lima1-202ENSMUST00000109024 Abcc8B2RUS7 1588 aa15.11■□□□□ 0.01
Lima1-202ENSMUST00000109024 Zeb1Q64318 1117 aa15.09■□□□□ 0.01
Lima1-202ENSMUST00000109024 HrcG5E8J6 738 aa15.09■□□□□ 0.01
Lima1-202ENSMUST00000109024 Esf1Q3V1V3 845 aaKnown RBP14.98□□□□□ -0.01
Lima1-202ENSMUST00000109024 Pcgf6Q99NA9 353 aa14.94□□□□□ -0.02
Lima1-202ENSMUST00000109024 Wdr66E9Q743 1299 aa14.9□□□□□ -0.02
Lima1-202ENSMUST00000109024 Las1lA2BE28 776 aaKnown RBP14.84□□□□□ -0.03
Lima1-202ENSMUST00000109024 Gm35339A0A140LHH9 1649 aa14.8□□□□□ -0.04
Lima1-202ENSMUST00000109024 NefmP08553 848 aa14.71□□□□□ -0.05
Lima1-202ENSMUST00000109024 Myt1lP97500 1187 aa14.69□□□□□ -0.06
Lima1-202ENSMUST00000109024 Supt5hO55201 1082 aaKnown RBP14.68□□□□□ -0.06
Lima1-202ENSMUST00000109024 Zcchc6Q5BLK4 1491 aaKnown RBP14.66□□□□□ -0.06
Lima1-202ENSMUST00000109024 UbtfP25976 765 aaKnown RBP14.65□□□□□ -0.06
Lima1-202ENSMUST00000109024 Npm2Q80W85 207 aa14.62□□□□□ -0.07
Lima1-202ENSMUST00000109024 Dcaf1Q80TR8 1506 aa14.47□□□□□ -0.09
Lima1-202ENSMUST00000109024 Mier1Q5UAK0 511 aa14.42□□□□□ -0.1
Lima1-202ENSMUST00000109024 Ppargc1bQ8VHJ7 1014 aa14.37□□□□□ -0.11
Lima1-202ENSMUST00000109024 Cdk11bP24788 784 aaKnown RBP14.33□□□□□ -0.12
Lima1-202ENSMUST00000109024 Rb1cc1Q9ESK9 1588 aa14.32□□□□□ -0.12
Lima1-202ENSMUST00000109024 Ube2uB1AUC4 352 aa14.31□□□□□ -0.12
Lima1-202ENSMUST00000109024 Chic1Q8CBW7 227 aa14.3□□□□□ -0.12
Lima1-202ENSMUST00000109024 CenpbP27790 599 aa14.28□□□□□ -0.12
Lima1-202ENSMUST00000109024 Cep164Q5DU05 1446 aa14.28□□□□□ -0.12
Lima1-202ENSMUST00000109024 Neurod1Q60867 357 aa14.27□□□□□ -0.12
Lima1-202ENSMUST00000109024 Nop58Q6DFW4 536 aaKnown RBP14.26□□□□□ -0.13
Lima1-202ENSMUST00000109024 Sall2Q9QX96 1004 aa14.18□□□□□ -0.14
Lima1-202ENSMUST00000109024 Il27Q8K3I6 234 aa14.18□□□□□ -0.14
Lima1-202ENSMUST00000109024 Ap3b1Q9Z1T1 1105 aa14.12□□□□□ -0.15
Lima1-202ENSMUST00000109024 TonslQ6NZL6 1363 aa14.12□□□□□ -0.15
Lima1-202ENSMUST00000109024 Brd4Q9ESU6 1400 aaKnown RBP14.05□□□□□ -0.16
Lima1-202ENSMUST00000109024 Baz1aO88379 1555 aa14.05□□□□□ -0.16
Lima1-202ENSMUST00000109024 Plekhg3Q4VAC9 1341 aa14.05□□□□□ -0.16
Lima1-202ENSMUST00000109024 Slc24a1Q91WD8 1130 aa14.04□□□□□ -0.16
Lima1-202ENSMUST00000109024 ClspnQ80YR7 1315 aa14.02□□□□□ -0.17
Lima1-202ENSMUST00000109024 Fam50aQ9WV03 339 aaKnown RBP14.01□□□□□ -0.17
Lima1-202ENSMUST00000109024 Stra8P70278 393 aa13.98□□□□□ -0.17
Lima1-202ENSMUST00000109024 Pelp1Q9DBD5 1123 aaKnown RBP13.98□□□□□ -0.17
Lima1-202ENSMUST00000109024 Csrnp3P59055 597 aa13.96□□□□□ -0.18
Lima1-202ENSMUST00000109024 NclP09405 707 aaKnown RBP13.95□□□□□ -0.18
Lima1-202ENSMUST00000109024 Anks4bQ8K3X6 423 aa13.95□□□□□ -0.18
Lima1-202ENSMUST00000109024 NacadQ5SWP3 1504 aa13.93□□□□□ -0.18
Lima1-202ENSMUST00000109024 Rsf1E9PWW9 1441 aaKnown RBP13.9□□□□□ -0.18
Lima1-202ENSMUST00000109024 Eid3Q3V124 375 aa13.89□□□□□ -0.19
Lima1-202ENSMUST00000109024 Tnnt3Q9QZ47 272 aa13.88□□□□□ -0.19
Lima1-202ENSMUST00000109024 Kdm5dQ62240 1548 aa13.87□□□□□ -0.19
Lima1-202ENSMUST00000109024 Gm38655A0A286YDK6 273 aa13.87□□□□□ -0.19
Lima1-202ENSMUST00000109024 Aebp2Q9Z248 504 aaKnown RBP13.84□□□□□ -0.19
Lima1-202ENSMUST00000109024 Clip1Q922J3 1391 aa13.83□□□□□ -0.19
Lima1-202ENSMUST00000109024 Mapk8ip2Q9ERE9 830 aa13.82□□□□□ -0.2
Lima1-202ENSMUST00000109024 Golga3P55937 1487 aa13.81□□□□□ -0.2
Lima1-202ENSMUST00000109024 Myt1Q8CFC2 1127 aa13.81□□□□□ -0.2
Lima1-202ENSMUST00000109024 Lmod2Q3UHZ5 550 aa13.79□□□□□ -0.2
Lima1-202ENSMUST00000109024 1700123L14RikQ3V2K7 440 aa13.74□□□□□ -0.21
Lima1-202ENSMUST00000109024 Ccdc88bQ4QRL3 1481 aa13.73□□□□□ -0.21
Lima1-202ENSMUST00000109024 Eif5bQ05D44 1216 aaKnown RBP13.72□□□□□ -0.21
Lima1-202ENSMUST00000109024 Aplp2Q06335 707 aa13.7□□□□□ -0.22
Lima1-202ENSMUST00000109024 NrdcQ8BHG1 1161 aa13.66□□□□□ -0.22
Lima1-202ENSMUST00000109024 ScribQ80U72 1612 aa13.61□□□□□ -0.23
Lima1-202ENSMUST00000109024 Npm1Q61937 292 aaKnown RBP13.58□□□□□ -0.24
Lima1-202ENSMUST00000109024 Ttbk1Q6PCN3 1308 aa13.55□□□□□ -0.24
Lima1-202ENSMUST00000109024 DiexfQ8BTT6 772 aaKnown RBP13.54□□□□□ -0.24
Lima1-202ENSMUST00000109024 Anp32aO35381 247 aa13.53□□□□□ -0.24
Lima1-202ENSMUST00000109024 Smarca2Q6DIC0 1577 aa13.52□□□□□ -0.25
Lima1-202ENSMUST00000109024 BlmO88700 1416 aa13.49□□□□□ -0.25
Lima1-202ENSMUST00000109024 Setd5Q5XJV7 1441 aa13.49□□□□□ -0.25
Lima1-202ENSMUST00000109024 Crybg2B7ZCC2 1516 aa13.48□□□□□ -0.25
Lima1-202ENSMUST00000109024 Cecr2E9Q2Z1 1453 aa13.48□□□□□ -0.25
Lima1-202ENSMUST00000109024 Sycp2Q9CUU3 1500 aa13.43□□□□□ -0.26
Lima1-202ENSMUST00000109024 Cep162Q6ZQ06 1403 aa13.42□□□□□ -0.26
Lima1-202ENSMUST00000109024 Amer1Q7TS75 1132 aa13.42□□□□□ -0.26
Lima1-202ENSMUST00000109024 Anp32bQ9EST5 272 aaKnown RBP13.41□□□□□ -0.26
Lima1-202ENSMUST00000109024 Ccer2J3QPU5 274 aa13.41□□□□□ -0.26
Lima1-202ENSMUST00000109024 Calr4Q3TQS0 420 aa13.4□□□□□ -0.26
Lima1-202ENSMUST00000109024 Chic2Q9D9G3 165 aa13.4□□□□□ -0.26
Lima1-202ENSMUST00000109024 Eea1Q8BL66 1411 aa13.39□□□□□ -0.27
Lima1-202ENSMUST00000109024 Rtl5Q5DTT4 599 aa13.38□□□□□ -0.27
Lima1-202ENSMUST00000109024 Hnrnpul2Q00PI9 745 aaKnown RBP13.37□□□□□ -0.27
Lima1-202ENSMUST00000109024 CftrP26361 1476 aa13.37□□□□□ -0.27
Lima1-202ENSMUST00000109024 NeflP08551 543 aa13.37□□□□□ -0.27
Lima1-202ENSMUST00000109024 Fam71e1A1L3C1 212 aa13.36□□□□□ -0.27
Lima1-202ENSMUST00000109024 SafbD3YXK2 937 aaKnown RBP13.36□□□□□ -0.27
Lima1-202ENSMUST00000109024 Zbtb7cQ8VCZ7 619 aa13.36□□□□□ -0.27
Lima1-202ENSMUST00000109024 Synj1Q8CHC4 1574 aa13.34□□□□□ -0.27
Lima1-202ENSMUST00000109024 Fmn1Q05860 1466 aa13.32□□□□□ -0.28
Lima1-202ENSMUST00000109024 Kif15Q6P9L6 1387 aa13.32□□□□□ -0.28
Lima1-202ENSMUST00000109024 Zbtb4Q5F293 982 aa13.32□□□□□ -0.28
Lima1-202ENSMUST00000109024 Ppp4r2Q0VGB7 417 aa13.31□□□□□ -0.28
Lima1-202ENSMUST00000109024 Mrs2Q5NCE8 434 aa13.31□□□□□ -0.28
Retrieved 100 of 22,080 RNA–protein pairs in 24.7 ms