RNA–Protein interactions for RNA: ENSMUST00000034713.8

Ldlr-201, Transcript of Low-density lipoprotein receptor, mousemouse

APPRIS P2 TSL 1 (best) BASIC

Gene Ldlr, Length 4,627 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ldlr-201ENSMUST00000034713 Rhox8Q6VSS7 320 aa17.67■□□□□ 0.42
Ldlr-201ENSMUST00000034713 NischQ80TM9 1593 aa17.28■□□□□ 0.36
Ldlr-201ENSMUST00000034713 Rpgrip1Q9EPQ2 1331 aa16.59■□□□□ 0.25
Ldlr-201ENSMUST00000034713 Abcc9P70170 1546 aa16.38■□□□□ 0.21
Ldlr-201ENSMUST00000034713 Abcc8B2RUS7 1588 aa16.13■□□□□ 0.17
Ldlr-201ENSMUST00000034713 Gm35339A0A140LHH9 1649 aa16.03■□□□□ 0.16
Ldlr-201ENSMUST00000034713 Ccdc136Q3TVA9 1136 aa15.96■□□□□ 0.15
Ldlr-201ENSMUST00000034713 Trim41Q5NCC3 630 aa15.8■□□□□ 0.12
Ldlr-201ENSMUST00000034713 Esf1Q3V1V3 845 aaKnown RBP15.8■□□□□ 0.12
Ldlr-201ENSMUST00000034713 Ehmt2Q9Z148 1263 aaKnown RBP15.76■□□□□ 0.11
Ldlr-201ENSMUST00000034713 Cngb1E1AZ71 1325 aa15.65■□□□□ 0.1
Ldlr-201ENSMUST00000034713 Las1lA2BE28 776 aaKnown RBP15.63■□□□□ 0.09
Ldlr-201ENSMUST00000034713 Zcchc6Q5BLK4 1491 aaKnown RBP15.48■□□□□ 0.07
Ldlr-201ENSMUST00000034713 Rtl1Q7M732 1744 aa15.33■□□□□ 0.04
Ldlr-201ENSMUST00000034713 Acin1Q9JIX8 1338 aaKnown RBP15.31■□□□□ 0.04
Ldlr-201ENSMUST00000034713 Ccdc180J3QNE4 1664 aa15.24■□□□□ 0.03
Ldlr-201ENSMUST00000034713 Gab3Q8BSM5 595 aa15.23■□□□□ 0.03
Ldlr-201ENSMUST00000034713 NacadQ5SWP3 1504 aa15.22■□□□□ 0.03
Ldlr-201ENSMUST00000034713 Npm2Q80W85 207 aa15.2■□□□□ 0.02
Ldlr-201ENSMUST00000034713 Zeb1Q64318 1117 aa15.19■□□□□ 0.02
Ldlr-201ENSMUST00000034713 Rb1cc1Q9ESK9 1588 aa15.14■□□□□ 0.01
Ldlr-201ENSMUST00000034713 Wdr66E9Q743 1299 aa15.09■□□□□ 0.01
Ldlr-201ENSMUST00000034713 HrcG5E8J6 738 aa15.07■□□□□ 0
Ldlr-201ENSMUST00000034713 NefmP08553 848 aa15.02■□□□□ -0
Ldlr-201ENSMUST00000034713 Pelp1Q9DBD5 1123 aaKnown RBP15.02■□□□□ -0
Ldlr-201ENSMUST00000034713 Myt1lP97500 1187 aa14.99□□□□□ -0.01
Ldlr-201ENSMUST00000034713 Dcaf1Q80TR8 1506 aa14.99□□□□□ -0.01
Ldlr-201ENSMUST00000034713 Il27Q8K3I6 234 aa14.95□□□□□ -0.02
Ldlr-201ENSMUST00000034713 Kdm5dQ62240 1548 aa14.94□□□□□ -0.02
Ldlr-201ENSMUST00000034713 Brd4Q9ESU6 1400 aaKnown RBP14.89□□□□□ -0.03
Ldlr-201ENSMUST00000034713 Baz1aO88379 1555 aa14.88□□□□□ -0.03
Ldlr-201ENSMUST00000034713 CenpbP27790 599 aa14.84□□□□□ -0.03
Ldlr-201ENSMUST00000034713 Pcgf6Q99NA9 353 aa14.75□□□□□ -0.05
Ldlr-201ENSMUST00000034713 Npm1Q61937 292 aaKnown RBP14.7□□□□□ -0.06
Ldlr-201ENSMUST00000034713 Myt1Q8CFC2 1127 aa14.69□□□□□ -0.06
Ldlr-201ENSMUST00000034713 ScribQ80U72 1612 aa14.69□□□□□ -0.06
Ldlr-201ENSMUST00000034713 Stra8P70278 393 aa14.65□□□□□ -0.06
Ldlr-201ENSMUST00000034713 Ube2uB1AUC4 352 aa14.65□□□□□ -0.06
Ldlr-201ENSMUST00000034713 Sycp2Q9CUU3 1500 aa14.63□□□□□ -0.07
Ldlr-201ENSMUST00000034713 Ubl4bQ9CQ84 188 aa14.54□□□□□ -0.08
Ldlr-201ENSMUST00000034713 Cdk11bP24788 784 aaKnown RBP14.53□□□□□ -0.08
Ldlr-201ENSMUST00000034713 UbtfP25976 765 aaKnown RBP14.53□□□□□ -0.08
Ldlr-201ENSMUST00000034713 Crybg2B7ZCC2 1516 aa14.52□□□□□ -0.09
Ldlr-201ENSMUST00000034713 Ercc6F8VPZ5 1481 aa14.47□□□□□ -0.09
Ldlr-201ENSMUST00000034713 Pds5bQ4VA53 1446 aaKnown RBP14.46□□□□□ -0.09
Ldlr-201ENSMUST00000034713 Tnnt3Q9QZ47 272 aa14.42□□□□□ -0.1
Ldlr-201ENSMUST00000034713 Cep164Q5DU05 1446 aa14.38□□□□□ -0.11
Ldlr-201ENSMUST00000034713 Chic1Q8CBW7 227 aa14.37□□□□□ -0.11
Ldlr-201ENSMUST00000034713 Nop58Q6DFW4 536 aaKnown RBP14.36□□□□□ -0.11
Ldlr-201ENSMUST00000034713 Ap3b1Q9Z1T1 1105 aa14.36□□□□□ -0.11
Ldlr-201ENSMUST00000034713 Supt5hO55201 1082 aaKnown RBP14.36□□□□□ -0.11
Ldlr-201ENSMUST00000034713 Golga3P55937 1487 aa14.35□□□□□ -0.11
Ldlr-201ENSMUST00000034713 Rsf1E9PWW9 1441 aaKnown RBP14.34□□□□□ -0.11
Ldlr-201ENSMUST00000034713 Kif15Q6P9L6 1387 aa14.28□□□□□ -0.12
Ldlr-201ENSMUST00000034713 Amer1Q7TS75 1132 aa14.28□□□□□ -0.12
Ldlr-201ENSMUST00000034713 Ppargc1bQ8VHJ7 1014 aa14.23□□□□□ -0.13
Ldlr-201ENSMUST00000034713 Smarca2Q6DIC0 1577 aa14.22□□□□□ -0.13
Ldlr-201ENSMUST00000034713 Atad2bE9Q166 1460 aaKnown RBP14.2□□□□□ -0.14
Ldlr-201ENSMUST00000034713 TonslQ6NZL6 1363 aa14.18□□□□□ -0.14
Ldlr-201ENSMUST00000034713 Fam50aQ9WV03 339 aaKnown RBP14.18□□□□□ -0.14
Ldlr-201ENSMUST00000034713 Mier1Q5UAK0 511 aa14.16□□□□□ -0.14
Ldlr-201ENSMUST00000034713 Ccdc18Q640L5 1455 aa14.16□□□□□ -0.14
Ldlr-201ENSMUST00000034713 Rtl5Q5DTT4 599 aa14.15□□□□□ -0.14
Ldlr-201ENSMUST00000034713 Cecr2E9Q2Z1 1453 aa14.15□□□□□ -0.14
Ldlr-201ENSMUST00000034713 CftrP26361 1476 aa14.13□□□□□ -0.15
Ldlr-201ENSMUST00000034713 ClspnQ80YR7 1315 aa14.1□□□□□ -0.15
Ldlr-201ENSMUST00000034713 Smarca4Q3TKT4 1613 aaKnown RBP14.1□□□□□ -0.15
Ldlr-201ENSMUST00000034713 Lmod2Q3UHZ5 550 aa14.09□□□□□ -0.15
Ldlr-201ENSMUST00000034713 Clip1Q922J3 1391 aa14.08□□□□□ -0.16
Ldlr-201ENSMUST00000034713 Slc24a1Q91WD8 1130 aa14.08□□□□□ -0.16
Ldlr-201ENSMUST00000034713 Plekhg3Q4VAC9 1341 aa14.06□□□□□ -0.16
Ldlr-201ENSMUST00000034713 DiexfQ8BTT6 772 aaKnown RBP14.06□□□□□ -0.16
Ldlr-201ENSMUST00000034713 NclP09405 707 aaKnown RBP14.05□□□□□ -0.16
Ldlr-201ENSMUST00000034713 NrdcQ8BHG1 1161 aa14.05□□□□□ -0.16
Ldlr-201ENSMUST00000034713 Phldb1Q6PDH0 1371 aaKnown RBP14.03□□□□□ -0.16
Ldlr-201ENSMUST00000034713 Anp32bQ9EST5 272 aaKnown RBP14.01□□□□□ -0.17
Ldlr-201ENSMUST00000034713 Fmn1Q05860 1466 aa14□□□□□ -0.17
Ldlr-201ENSMUST00000034713 Anks4bQ8K3X6 423 aa13.99□□□□□ -0.17
Ldlr-201ENSMUST00000034713 Synj1Q8CHC4 1574 aa13.99□□□□□ -0.17
Ldlr-201ENSMUST00000034713 Neurod1Q60867 357 aa13.97□□□□□ -0.17
Ldlr-201ENSMUST00000034713 Cttnbp2B9EJA2 1648 aa13.93□□□□□ -0.18
Ldlr-201ENSMUST00000034713 Iqgap2Q3UQ44 1575 aa13.92□□□□□ -0.18
Ldlr-201ENSMUST00000034713 Fkbp15Q6P9Q6 1216 aaKnown RBP13.91□□□□□ -0.18
Ldlr-201ENSMUST00000034713 Ifnlr1Q8CGK5 535 aa13.91□□□□□ -0.18
Ldlr-201ENSMUST00000034713 NeflP08551 543 aa13.9□□□□□ -0.18
Ldlr-201ENSMUST00000034713 Ccdc88bQ4QRL3 1481 aa13.89□□□□□ -0.19
Ldlr-201ENSMUST00000034713 Cux2P70298 1426 aa13.89□□□□□ -0.19
Ldlr-201ENSMUST00000034713 Setd5Q5XJV7 1441 aa13.89□□□□□ -0.19
Ldlr-201ENSMUST00000034713 Aplp2Q06335 707 aa13.89□□□□□ -0.19
Ldlr-201ENSMUST00000034713 Anp32aO35381 247 aa13.88□□□□□ -0.19
Ldlr-201ENSMUST00000034713 Sall2Q9QX96 1004 aa13.86□□□□□ -0.19
Ldlr-201ENSMUST00000034713 BicraF8VPZ9 1578 aa13.83□□□□□ -0.2
Ldlr-201ENSMUST00000034713 4933416C03RikQ3V063 378 aa13.82□□□□□ -0.2
Ldlr-201ENSMUST00000034713 BlmO88700 1416 aa13.81□□□□□ -0.2
Ldlr-201ENSMUST00000034713 Eea1Q8BL66 1411 aa13.8□□□□□ -0.2
Ldlr-201ENSMUST00000034713 Eif5bQ05D44 1216 aaKnown RBP13.78□□□□□ -0.2
Ldlr-201ENSMUST00000034713 Ttbk1Q6PCN3 1308 aa13.75□□□□□ -0.21
Ldlr-201ENSMUST00000034713 Arhgap27A2AB59 869 aa13.74□□□□□ -0.21
Ldlr-201ENSMUST00000034713 Hnrnpul2Q00PI9 745 aaKnown RBP13.74□□□□□ -0.21
Ldlr-201ENSMUST00000034713 Eid3Q3V124 375 aa13.74□□□□□ -0.21
Retrieved 100 of 22,080 RNA–protein pairs in 8.5 ms