RNA–Protein interactions for RNA: ENSMUST00000033088.7

Rnf40-201, Transcript of E3 ubiquitin-protein ligase BRE1B, mousemouse

TSL 5 BASIC

Gene Rnf40, Length 3,906 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40-201ENSMUST00000033088 NischQ80TM9 1593 aa19.12■□□□□ 0.65
Rnf40-201ENSMUST00000033088 Gm35339A0A140LHH9 1649 aa18.98■□□□□ 0.63
Rnf40-201ENSMUST00000033088 Rhox8Q6VSS7 320 aa18.79■□□□□ 0.6
Rnf40-201ENSMUST00000033088 Abcc9P70170 1546 aa18.54■□□□□ 0.56
Rnf40-201ENSMUST00000033088 Ehmt2Q9Z148 1263 aaKnown RBP18.42■□□□□ 0.54
Rnf40-201ENSMUST00000033088 Abcc8B2RUS7 1588 aa18.26■□□□□ 0.51
Rnf40-201ENSMUST00000033088 Rpgrip1Q9EPQ2 1331 aa17.51■□□□□ 0.39
Rnf40-201ENSMUST00000033088 Zeb1Q64318 1117 aa17.24■□□□□ 0.35
Rnf40-201ENSMUST00000033088 ScribQ80U72 1612 aa17.17■□□□□ 0.34
Rnf40-201ENSMUST00000033088 Ccdc136Q3TVA9 1136 aa17.06■□□□□ 0.32
Rnf40-201ENSMUST00000033088 Pcgf6Q99NA9 353 aa17.04■□□□□ 0.32
Rnf40-201ENSMUST00000033088 Dcaf1Q80TR8 1506 aa17.02■□□□□ 0.31
Rnf40-201ENSMUST00000033088 Acin1Q9JIX8 1338 aaKnown RBP16.98■□□□□ 0.31
Rnf40-201ENSMUST00000033088 Wdr66E9Q743 1299 aa16.9■□□□□ 0.3
Rnf40-201ENSMUST00000033088 Kdm5dQ62240 1548 aa16.81■□□□□ 0.28
Rnf40-201ENSMUST00000033088 Las1lA2BE28 776 aaKnown RBP16.79■□□□□ 0.28
Rnf40-201ENSMUST00000033088 Gab3Q8BSM5 595 aa16.79■□□□□ 0.28
Rnf40-201ENSMUST00000033088 NacadQ5SWP3 1504 aa16.79■□□□□ 0.28
Rnf40-201ENSMUST00000033088 Supt5hO55201 1082 aaKnown RBP16.76■□□□□ 0.27
Rnf40-201ENSMUST00000033088 Ppargc1bQ8VHJ7 1014 aa16.75■□□□□ 0.27
Rnf40-201ENSMUST00000033088 Rtl1Q7M732 1744 aa16.75■□□□□ 0.27
Rnf40-201ENSMUST00000033088 Rb1cc1Q9ESK9 1588 aa16.72■□□□□ 0.27
Rnf40-201ENSMUST00000033088 Cngb1E1AZ71 1325 aa16.59■□□□□ 0.25
Rnf40-201ENSMUST00000033088 Ccdc180J3QNE4 1664 aa16.56■□□□□ 0.24
Rnf40-201ENSMUST00000033088 Trim41Q5NCC3 630 aa16.54■□□□□ 0.24
Rnf40-201ENSMUST00000033088 Baz1aO88379 1555 aa16.53■□□□□ 0.24
Rnf40-201ENSMUST00000033088 Gm38655A0A286YDK6 273 aa16.46■□□□□ 0.23
Rnf40-201ENSMUST00000033088 Neurod1Q60867 357 aa16.44■□□□□ 0.22
Rnf40-201ENSMUST00000033088 Sycp2Q9CUU3 1500 aa16.4■□□□□ 0.22
Rnf40-201ENSMUST00000033088 Crybg2B7ZCC2 1516 aa16.36■□□□□ 0.21
Rnf40-201ENSMUST00000033088 CenpbP27790 599 aa16.27■□□□□ 0.2
Rnf40-201ENSMUST00000033088 UbtfP25976 765 aaKnown RBP16.25■□□□□ 0.19
Rnf40-201ENSMUST00000033088 Zcchc6Q5BLK4 1491 aaKnown RBP16.24■□□□□ 0.19
Rnf40-201ENSMUST00000033088 Csrnp3P59055 597 aa16.18■□□□□ 0.18
Rnf40-201ENSMUST00000033088 Ttbk1Q6PCN3 1308 aa16.17■□□□□ 0.18
Rnf40-201ENSMUST00000033088 Myt1lP97500 1187 aa16.13■□□□□ 0.17
Rnf40-201ENSMUST00000033088 Smarca2Q6DIC0 1577 aa16.1■□□□□ 0.17
Rnf40-201ENSMUST00000033088 Slc24a1Q91WD8 1130 aa16.09■□□□□ 0.17
Rnf40-201ENSMUST00000033088 Cdk11bP24788 784 aaKnown RBP16.08■□□□□ 0.17
Rnf40-201ENSMUST00000033088 BicraF8VPZ9 1578 aa16.03■□□□□ 0.16
Rnf40-201ENSMUST00000033088 Nop58Q6DFW4 536 aaKnown RBP16.03■□□□□ 0.16
Rnf40-201ENSMUST00000033088 Sall2Q9QX96 1004 aa16.01■□□□□ 0.15
Rnf40-201ENSMUST00000033088 Esf1Q3V1V3 845 aaKnown RBP15.98■□□□□ 0.15
Rnf40-201ENSMUST00000033088 NefmP08553 848 aa15.97■□□□□ 0.15
Rnf40-201ENSMUST00000033088 Amer1Q7TS75 1132 aa15.93■□□□□ 0.14
Rnf40-201ENSMUST00000033088 1700123L14RikQ3V2K7 440 aa15.91■□□□□ 0.14
Rnf40-201ENSMUST00000033088 Mier1Q5UAK0 511 aa15.9■□□□□ 0.14
Rnf40-201ENSMUST00000033088 DiexfQ8BTT6 772 aaKnown RBP15.88■□□□□ 0.13
Rnf40-201ENSMUST00000033088 Mapk8ip2Q9ERE9 830 aa15.87■□□□□ 0.13
Rnf40-201ENSMUST00000033088 HrcG5E8J6 738 aa15.85■□□□□ 0.13
Rnf40-201ENSMUST00000033088 Ube2uB1AUC4 352 aa15.84■□□□□ 0.13
Rnf40-201ENSMUST00000033088 Cecr2E9Q2Z1 1453 aa15.78■□□□□ 0.12
Rnf40-201ENSMUST00000033088 Brd4Q9ESU6 1400 aaKnown RBP15.77■□□□□ 0.12
Rnf40-201ENSMUST00000033088 Npm2Q80W85 207 aa15.75■□□□□ 0.11
Rnf40-201ENSMUST00000033088 Pelp1Q9DBD5 1123 aaKnown RBP15.65■□□□□ 0.1
Rnf40-201ENSMUST00000033088 Ap3b1Q9Z1T1 1105 aa15.64■□□□□ 0.09
Rnf40-201ENSMUST00000033088 Eif5bQ05D44 1216 aaKnown RBP15.64■□□□□ 0.09
Rnf40-201ENSMUST00000033088 Myt1Q8CFC2 1127 aa15.64■□□□□ 0.09
Rnf40-201ENSMUST00000033088 Smarca4Q3TKT4 1613 aaKnown RBP15.63■□□□□ 0.09
Rnf40-201ENSMUST00000033088 Anks4bQ8K3X6 423 aa15.62■□□□□ 0.09
Rnf40-201ENSMUST00000033088 Synj1Q8CHC4 1574 aa15.59■□□□□ 0.09
Rnf40-201ENSMUST00000033088 CftrP26361 1476 aa15.57■□□□□ 0.08
Rnf40-201ENSMUST00000033088 Aebp2Q9Z248 504 aaKnown RBP15.56■□□□□ 0.08
Rnf40-201ENSMUST00000033088 Eid3Q3V124 375 aa15.53■□□□□ 0.08
Rnf40-201ENSMUST00000033088 Pds5bQ4VA53 1446 aaKnown RBP15.53■□□□□ 0.08
Rnf40-201ENSMUST00000033088 Cttnbp2B9EJA2 1648 aa15.52■□□□□ 0.07
Rnf40-201ENSMUST00000033088 Atad2bE9Q166 1460 aaKnown RBP15.5■□□□□ 0.07
Rnf40-201ENSMUST00000033088 TonslQ6NZL6 1363 aa15.45■□□□□ 0.06
Rnf40-201ENSMUST00000033088 Iqgap2Q3UQ44 1575 aa15.45■□□□□ 0.06
Rnf40-201ENSMUST00000033088 Fam71e1A1L3C1 212 aa15.44■□□□□ 0.06
Rnf40-201ENSMUST00000033088 SafbD3YXK2 937 aaKnown RBP15.44■□□□□ 0.06
Rnf40-201ENSMUST00000033088 Golga3P55937 1487 aa15.43■□□□□ 0.06
Rnf40-201ENSMUST00000033088 Aplp2Q06335 707 aa15.4■□□□□ 0.06
Rnf40-201ENSMUST00000033088 NclP09405 707 aaKnown RBP15.39■□□□□ 0.05
Rnf40-201ENSMUST00000033088 ClspnQ80YR7 1315 aa15.39■□□□□ 0.05
Rnf40-201ENSMUST00000033088 Plekhg3Q4VAC9 1341 aa15.38■□□□□ 0.05
Rnf40-201ENSMUST00000033088 4933416C03RikQ3V063 378 aa15.37■□□□□ 0.05
Rnf40-201ENSMUST00000033088 Chic1Q8CBW7 227 aa15.37■□□□□ 0.05
Rnf40-201ENSMUST00000033088 Fam50aQ9WV03 339 aaKnown RBP15.37■□□□□ 0.05
Rnf40-201ENSMUST00000033088 Bcl11aQ9QYE3 773 aa15.32■□□□□ 0.04
Rnf40-201ENSMUST00000033088 Cep164Q5DU05 1446 aa15.3■□□□□ 0.04
Rnf40-201ENSMUST00000033088 Il27Q8K3I6 234 aa15.27■□□□□ 0.04
Rnf40-201ENSMUST00000033088 Tnnt3Q9QZ47 272 aa15.27■□□□□ 0.03
Rnf40-201ENSMUST00000033088 Top2bQ64511 1612 aa15.26■□□□□ 0.03
Rnf40-201ENSMUST00000033088 Ercc6F8VPZ5 1481 aa15.24■□□□□ 0.03
Rnf40-201ENSMUST00000033088 Rsf1E9PWW9 1441 aaKnown RBP15.22■□□□□ 0.03
Rnf40-201ENSMUST00000033088 Stra8P70278 393 aa15.22■□□□□ 0.03
Rnf40-201ENSMUST00000033088 Hnrnpul2Q00PI9 745 aaKnown RBP15.21■□□□□ 0.03
Rnf40-201ENSMUST00000033088 Wdr62Q3U3T8 1523 aa15.19■□□□□ 0.02
Rnf40-201ENSMUST00000033088 Frmpd1A2AKB4 1549 aa15.18■□□□□ 0.02
Rnf40-201ENSMUST00000033088 Ccdc88bQ4QRL3 1481 aa15.17■□□□□ 0.02
Rnf40-201ENSMUST00000033088 Anp32aO35381 247 aa15.17■□□□□ 0.02
Rnf40-201ENSMUST00000033088 Fmn1Q05860 1466 aa15.12■□□□□ 0.01
Rnf40-201ENSMUST00000033088 Ppp4r2Q0VGB7 417 aa15.1■□□□□ 0.01
Rnf40-201ENSMUST00000033088 Cc2d2aQ8CFW7 1633 aa15.1■□□□□ 0.01
Rnf40-201ENSMUST00000033088 DaxxO35613 739 aa15.1■□□□□ 0.01
Rnf40-201ENSMUST00000033088 Ifnlr1Q8CGK5 535 aa15.07■□□□□ 0
Rnf40-201ENSMUST00000033088 Lmod2Q3UHZ5 550 aa15.07■□□□□ 0
Rnf40-201ENSMUST00000033088 NrdcQ8BHG1 1161 aa15.07■□□□□ 0
Rnf40-201ENSMUST00000033088 PrkcshO08795 521 aa15.06■□□□□ 0
Retrieved 100 of 22,080 RNA–protein pairs in 22.8 ms