RNA–Protein interactions for RNA: ENSMUST00000005503.3

Msh6-201, Transcript of DNA mismatch repair protein Msh6, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Msh6, Length 4,254 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Msh6-201ENSMUST00000005503 Rhox8Q6VSS7 320 aa22.54■■□□□ 1.2
Msh6-201ENSMUST00000005503 Ehmt2Q9Z148 1263 aaKnown RBP21.1■□□□□ 0.97
Msh6-201ENSMUST00000005503 Rpgrip1Q9EPQ2 1331 aa20.95■□□□□ 0.94
Msh6-201ENSMUST00000005503 NischQ80TM9 1593 aa20.8■□□□□ 0.92
Msh6-201ENSMUST00000005503 Ccdc136Q3TVA9 1136 aa20.44■□□□□ 0.86
Msh6-201ENSMUST00000005503 Acin1Q9JIX8 1338 aaKnown RBP20.12■□□□□ 0.81
Msh6-201ENSMUST00000005503 Zeb1Q64318 1117 aa19.96■□□□□ 0.79
Msh6-201ENSMUST00000005503 Trim41Q5NCC3 630 aa19.93■□□□□ 0.78
Msh6-201ENSMUST00000005503 Gab3Q8BSM5 595 aa19.88■□□□□ 0.77
Msh6-201ENSMUST00000005503 Cngb1E1AZ71 1325 aa19.77■□□□□ 0.76
Msh6-201ENSMUST00000005503 Pcgf6Q99NA9 353 aa19.74■□□□□ 0.75
Msh6-201ENSMUST00000005503 Ccdc180J3QNE4 1664 aa19.72■□□□□ 0.75
Msh6-201ENSMUST00000005503 Wdr66E9Q743 1299 aa19.69■□□□□ 0.74
Msh6-201ENSMUST00000005503 Abcc9P70170 1546 aa19.65■□□□□ 0.74
Msh6-201ENSMUST00000005503 Las1lA2BE28 776 aaKnown RBP19.63■□□□□ 0.73
Msh6-201ENSMUST00000005503 HrcG5E8J6 738 aa19.53■□□□□ 0.72
Msh6-201ENSMUST00000005503 Esf1Q3V1V3 845 aaKnown RBP19.47■□□□□ 0.71
Msh6-201ENSMUST00000005503 Rtl1Q7M732 1744 aa19.44■□□□□ 0.7
Msh6-201ENSMUST00000005503 Gm35339A0A140LHH9 1649 aa19.42■□□□□ 0.7
Msh6-201ENSMUST00000005503 Supt5hO55201 1082 aaKnown RBP19.39■□□□□ 0.69
Msh6-201ENSMUST00000005503 Myt1lP97500 1187 aa19.24■□□□□ 0.67
Msh6-201ENSMUST00000005503 UbtfP25976 765 aaKnown RBP19.22■□□□□ 0.67
Msh6-201ENSMUST00000005503 NefmP08553 848 aa19.22■□□□□ 0.67
Msh6-201ENSMUST00000005503 Abcc8B2RUS7 1588 aa19.17■□□□□ 0.66
Msh6-201ENSMUST00000005503 Ppargc1bQ8VHJ7 1014 aa19.08■□□□□ 0.65
Msh6-201ENSMUST00000005503 Npm2Q80W85 207 aa19.06■□□□□ 0.64
Msh6-201ENSMUST00000005503 CenpbP27790 599 aa18.91■□□□□ 0.62
Msh6-201ENSMUST00000005503 Neurod1Q60867 357 aa18.9■□□□□ 0.62
Msh6-201ENSMUST00000005503 Zcchc6Q5BLK4 1491 aaKnown RBP18.88■□□□□ 0.61
Msh6-201ENSMUST00000005503 Cdk11bP24788 784 aaKnown RBP18.88■□□□□ 0.61
Msh6-201ENSMUST00000005503 Mier1Q5UAK0 511 aa18.88■□□□□ 0.61
Msh6-201ENSMUST00000005503 Ube2uB1AUC4 352 aa18.8■□□□□ 0.6
Msh6-201ENSMUST00000005503 Nop58Q6DFW4 536 aaKnown RBP18.79■□□□□ 0.6
Msh6-201ENSMUST00000005503 Dcaf1Q80TR8 1506 aa18.74■□□□□ 0.59
Msh6-201ENSMUST00000005503 Sall2Q9QX96 1004 aa18.68■□□□□ 0.58
Msh6-201ENSMUST00000005503 Slc24a1Q91WD8 1130 aa18.59■□□□□ 0.57
Msh6-201ENSMUST00000005503 Chic1Q8CBW7 227 aa18.58■□□□□ 0.56
Msh6-201ENSMUST00000005503 Csrnp3P59055 597 aa18.51■□□□□ 0.55
Msh6-201ENSMUST00000005503 Gm38655A0A286YDK6 273 aa18.51■□□□□ 0.55
Msh6-201ENSMUST00000005503 Pelp1Q9DBD5 1123 aaKnown RBP18.49■□□□□ 0.55
Msh6-201ENSMUST00000005503 Ap3b1Q9Z1T1 1105 aa18.48■□□□□ 0.55
Msh6-201ENSMUST00000005503 TonslQ6NZL6 1363 aa18.47■□□□□ 0.55
Msh6-201ENSMUST00000005503 Il27Q8K3I6 234 aa18.46■□□□□ 0.55
Msh6-201ENSMUST00000005503 Cep164Q5DU05 1446 aa18.42■□□□□ 0.54
Msh6-201ENSMUST00000005503 ClspnQ80YR7 1315 aa18.36■□□□□ 0.53
Msh6-201ENSMUST00000005503 Anks4bQ8K3X6 423 aa18.35■□□□□ 0.53
Msh6-201ENSMUST00000005503 Plekhg3Q4VAC9 1341 aa18.35■□□□□ 0.53
Msh6-201ENSMUST00000005503 Fam50aQ9WV03 339 aaKnown RBP18.34■□□□□ 0.53
Msh6-201ENSMUST00000005503 Stra8P70278 393 aa18.31■□□□□ 0.52
Msh6-201ENSMUST00000005503 NclP09405 707 aaKnown RBP18.3■□□□□ 0.52
Msh6-201ENSMUST00000005503 Mapk8ip2Q9ERE9 830 aa18.28■□□□□ 0.52
Msh6-201ENSMUST00000005503 Rb1cc1Q9ESK9 1588 aa18.28■□□□□ 0.52
Msh6-201ENSMUST00000005503 Myt1Q8CFC2 1127 aa18.27■□□□□ 0.52
Msh6-201ENSMUST00000005503 Eid3Q3V124 375 aa18.25■□□□□ 0.51
Msh6-201ENSMUST00000005503 1700123L14RikQ3V2K7 440 aa18.22■□□□□ 0.51
Msh6-201ENSMUST00000005503 Tnnt3Q9QZ47 272 aa18.21■□□□□ 0.51
Msh6-201ENSMUST00000005503 Aebp2Q9Z248 504 aaKnown RBP18.2■□□□□ 0.5
Msh6-201ENSMUST00000005503 Ttbk1Q6PCN3 1308 aa18.16■□□□□ 0.5
Msh6-201ENSMUST00000005503 Eif5bQ05D44 1216 aaKnown RBP18.14■□□□□ 0.49
Msh6-201ENSMUST00000005503 Aplp2Q06335 707 aa18.06■□□□□ 0.48
Msh6-201ENSMUST00000005503 Lmod2Q3UHZ5 550 aa18.02■□□□□ 0.48
Msh6-201ENSMUST00000005503 Brd4Q9ESU6 1400 aaKnown RBP18■□□□□ 0.47
Msh6-201ENSMUST00000005503 Amer1Q7TS75 1132 aa17.98■□□□□ 0.47
Msh6-201ENSMUST00000005503 Rsf1E9PWW9 1441 aaKnown RBP17.95■□□□□ 0.46
Msh6-201ENSMUST00000005503 Clip1Q922J3 1391 aa17.95■□□□□ 0.46
Msh6-201ENSMUST00000005503 NrdcQ8BHG1 1161 aa17.93■□□□□ 0.46
Msh6-201ENSMUST00000005503 Baz1aO88379 1555 aa17.88■□□□□ 0.45
Msh6-201ENSMUST00000005503 DiexfQ8BTT6 772 aaKnown RBP17.86■□□□□ 0.45
Msh6-201ENSMUST00000005503 Anp32aO35381 247 aa17.83■□□□□ 0.44
Msh6-201ENSMUST00000005503 Golga3P55937 1487 aa17.72■□□□□ 0.43
Msh6-201ENSMUST00000005503 Ccdc88bQ4QRL3 1481 aa17.72■□□□□ 0.43
Msh6-201ENSMUST00000005503 Fam71e1A1L3C1 212 aa17.71■□□□□ 0.43
Msh6-201ENSMUST00000005503 SafbD3YXK2 937 aaKnown RBP17.7■□□□□ 0.42
Msh6-201ENSMUST00000005503 4933416C03RikQ3V063 378 aa17.67■□□□□ 0.42
Msh6-201ENSMUST00000005503 NacadQ5SWP3 1504 aa17.65■□□□□ 0.42
Msh6-201ENSMUST00000005503 Hnrnpul2Q00PI9 745 aaKnown RBP17.64■□□□□ 0.42
Msh6-201ENSMUST00000005503 Calr4Q3TQS0 420 aa17.64■□□□□ 0.41
Msh6-201ENSMUST00000005503 Kdm5dQ62240 1548 aa17.62■□□□□ 0.41
Msh6-201ENSMUST00000005503 Rtl5Q5DTT4 599 aa17.59■□□□□ 0.41
Msh6-201ENSMUST00000005503 Ppp4r2Q0VGB7 417 aa17.58■□□□□ 0.4
Msh6-201ENSMUST00000005503 NeflP08551 543 aa17.57■□□□□ 0.4
Msh6-201ENSMUST00000005503 Zbtb4Q5F293 982 aa17.54■□□□□ 0.4
Msh6-201ENSMUST00000005503 Zbtb7cQ8VCZ7 619 aa17.53■□□□□ 0.4
Msh6-201ENSMUST00000005503 Anp32bQ9EST5 272 aaKnown RBP17.52■□□□□ 0.4
Msh6-201ENSMUST00000005503 Npm1Q61937 292 aaKnown RBP17.51■□□□□ 0.39
Msh6-201ENSMUST00000005503 BlmO88700 1416 aa17.51■□□□□ 0.39
Msh6-201ENSMUST00000005503 Chic2Q9D9G3 165 aa17.49■□□□□ 0.39
Msh6-201ENSMUST00000005503 Mrs2Q5NCE8 434 aa17.47■□□□□ 0.39
Msh6-201ENSMUST00000005503 Setd5Q5XJV7 1441 aa17.46■□□□□ 0.39
Msh6-201ENSMUST00000005503 ScribQ80U72 1612 aa17.45■□□□□ 0.38
Msh6-201ENSMUST00000005503 P3h3Q8CG70 732 aa17.42■□□□□ 0.38
Msh6-201ENSMUST00000005503 Wdr43Q6ZQL4 677 aaKnown RBP17.41■□□□□ 0.38
Msh6-201ENSMUST00000005503 DaxxO35613 739 aa17.39■□□□□ 0.37
Msh6-201ENSMUST00000005503 Ccer2J3QPU5 274 aa17.34■□□□□ 0.37
Msh6-201ENSMUST00000005503 Os9Q8K2C7 672 aa17.33■□□□□ 0.36
Msh6-201ENSMUST00000005503 Cep162Q6ZQ06 1403 aa17.3■□□□□ 0.36
Msh6-201ENSMUST00000005503 Hspa5P20029 655 aaKnown RBP17.28■□□□□ 0.36
Msh6-201ENSMUST00000005503 Eea1Q8BL66 1411 aa17.28■□□□□ 0.36
Msh6-201ENSMUST00000005503 Bcl11aQ9QYE3 773 aa17.27■□□□□ 0.35
Msh6-201ENSMUST00000005503 Cecr2E9Q2Z1 1453 aa17.25■□□□□ 0.35
Retrieved 100 of 22,080 RNA–protein pairs in 65.4 ms