RNA–Protein interactions for RNA: YPR056W

TFB4, Transcript of Subunit of TFIIH complex, yeast

Gene TFB4, Length 1,017 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFB4	YPR056W	NKP1	Q12493	238 aa		7.4	□□□□□ -1.22
TFB4	YPR056W	FRT1	Q99332	602 aa		7.4	□□□□□ -1.22
TFB4	YPR056W	HTS1	P07263	546 aa	Known RBP	7.39	□□□□□ -1.23
TFB4	YPR056W	NAM7	P30771	971 aa	Known RBP	7.39	□□□□□ -1.23
TFB4	YPR056W	PBP2	P38151	413 aa	Known RBP RIP-Chip data	7.39	□□□□□ -1.23	not detected
TFB4	YPR056W	MNN1	P39106	762 aa		7.39	□□□□□ -1.23
TFB4	YPR056W	YJL049W	P47048	450 aa		7.39	□□□□□ -1.23
TFB4	YPR056W	COG4	Q06096	861 aa		7.39	□□□□□ -1.23
TFB4	YPR056W	PMT7	Q06644	662 aa		7.39	□□□□□ -1.23
TFB4	YPR056W	TRP3	P00937	484 aa		7.38	□□□□□ -1.23
TFB4	YPR056W	STI1	P15705	589 aa	Known RBP RIP-Chip data	7.38	□□□□□ -1.23	not detected
TFB4	YPR056W	MSB1	P21339	1137 aa	Known RBP	7.38	□□□□□ -1.23
TFB4	YPR056W	BUD6	P41697	788 aa		7.38	□□□□□ -1.23
TFB4	YPR056W	SPO74	P45819	413 aa		7.38	□□□□□ -1.23
TFB4	YPR056W	SAM37	P50110	327 aa		7.38	□□□□□ -1.23
TFB4	YPR056W	NUT1	P53114	1132 aa		7.38	□□□□□ -1.23
TFB4	YPR056W	GPI13	Q07830	1017 aa		7.38	□□□□□ -1.23
TFB4	YPR056W	CDC53	Q12018	815 aa	Known RBP	7.38	□□□□□ -1.23
TFB4	YPR056W	YKR073C	P36153	106 aa		7.37	□□□□□ -1.23
TFB4	YPR056W	MAD1	P40957	749 aa		7.37	□□□□□ -1.23
TFB4	YPR056W	GIC2	Q06648	383 aa		7.37	□□□□□ -1.23
TFB4	YPR056W	SSF2	Q12153	453 aa	Predicted RBP	7.37	□□□□□ -1.23
TFB4	YPR056W	PWP2	P25635	923 aa	Known RBP	7.36	□□□□□ -1.23
TFB4	YPR056W	UBP12	P39538	1254 aa		7.36	□□□□□ -1.23
TFB4	YPR056W	YEN1	P40028	759 aa		7.36	□□□□□ -1.23
TFB4	YPR056W	MEC3	Q02574	474 aa		7.36	□□□□□ -1.23
TFB4	YPR056W	YMR074C	Q04773	145 aa		7.36	□□□□□ -1.23
TFB4	YPR056W	ENT2	Q05785	613 aa		7.36	□□□□□ -1.23
TFB4	YPR056W	NOC3	Q07896	663 aa	Predicted RBP	7.36	□□□□□ -1.23
TFB4	YPR056W	WRS1	Q12109	432 aa	Known RBP	7.36	□□□□□ -1.23
TFB4	YPR056W	YOR131C	Q12486	218 aa		7.36	□□□□□ -1.23
TFB4	YPR056W	VPS24	P36095	224 aa	Known RBP	7.35	□□□□□ -1.23
TFB4	YPR056W	ARL1	P38116	183 aa	Known RBP	7.35	□□□□□ -1.23
TFB4	YPR056W	FUI1	P38196	639 aa		7.35	□□□□□ -1.23
TFB4	YPR056W	RVS167	P39743	482 aa	Known RBP	7.35	□□□□□ -1.23
TFB4	YPR056W	UTP22	P53254	1237 aa	Predicted RBP	7.35	□□□□□ -1.23
TFB4	YPR056W	YGR130C	P53278	816 aa		7.35	□□□□□ -1.23
TFB4	YPR056W	VPS16	Q03308	798 aa		7.35	□□□□□ -1.23
TFB4	YPR056W	INP54	Q08227	384 aa	Known RBP	7.35	□□□□□ -1.23
TFB4	YPR056W	THS1	P04801	734 aa	Known RBP	7.34	□□□□□ -1.23
TFB4	YPR056W	MET6	P05694	767 aa	Known RBP	7.34	□□□□□ -1.23
TFB4	YPR056W	PUB1	P32588	453 aa	Known RBP RIP-Chip data	7.34	□□□□□ -1.23	not detected
TFB4	YPR056W	ENP1	P38333	483 aa	Known RBP	7.34	□□□□□ -1.23
TFB4	YPR056W	CIC1	P38779	376 aa	Known RBP	7.34	□□□□□ -1.23
TFB4	YPR056W	FYV10	P40492	516 aa		7.34	□□□□□ -1.23
TFB4	YPR056W	IES1	P43579	692 aa		7.34	□□□□□ -1.23
TFB4	YPR056W	ESF2	P53743	316 aa	Known RBP	7.34	□□□□□ -1.23
TFB4	YPR056W	UTP14	Q04500	899 aa	Known RBP	7.34	□□□□□ -1.23
TFB4	YPR056W	TRX2	P22803	104 aa	Known RBP	7.33	□□□□□ -1.24
TFB4	YPR056W	TOS1	P38288	455 aa		7.33	□□□□□ -1.24
TFB4	YPR056W	MSH4	P40965	878 aa	Predicted RBP	7.33	□□□□□ -1.24
TFB4	YPR056W	PIN2	Q12057	282 aa		7.33	□□□□□ -1.24
TFB4	YPR056W	MPP10	P47083	593 aa	Known RBP	7.32	□□□□□ -1.24
TFB4	YPR056W	YCS4	Q06156	1176 aa		7.32	□□□□□ -1.24
TFB4	YPR056W	BDF2	Q07442	638 aa		7.32	□□□□□ -1.24
TFB4	YPR056W	RLP24	Q07915	199 aa	Known RBP	7.32	□□□□□ -1.24
TFB4	YPR056W	CYC7	P00045	113 aa		7.31	□□□□□ -1.24
TFB4	YPR056W	MET4	P32389	672 aa		7.31	□□□□□ -1.24
TFB4	YPR056W	DOT1	Q04089	582 aa	Known RBP	7.31	□□□□□ -1.24
TFB4	YPR056W	DPB3	P27344	201 aa		7.3	□□□□□ -1.24
TFB4	YPR056W	RPN12	P32496	274 aa		7.3	□□□□□ -1.24
TFB4	YPR056W	GPT2	P36148	743 aa		7.3	□□□□□ -1.24
TFB4	YPR056W	BRE4	Q07660	1125 aa		7.3	□□□□□ -1.24
TFB4	YPR056W	ERP4	Q12450	207 aa		7.3	□□□□□ -1.24
TFB4	YPR056W	CLN2	P20438	545 aa		7.29	□□□□□ -1.24
TFB4	YPR056W	MCM5	P29496	775 aa	Known RBP	7.29	□□□□□ -1.24
TFB4	YPR056W	GCD6	P32501	712 aa	Known RBP	7.29	□□□□□ -1.24
TFB4	YPR056W	VPS35	P34110	944 aa		7.29	□□□□□ -1.24
TFB4	YPR056W	REI1	P38344	393 aa	Predicted RBP	7.29	□□□□□ -1.24
TFB4	YPR056W	SHU2	P38957	223 aa		7.29	□□□□□ -1.24
TFB4	YPR056W	MMM1	P41800	426 aa		7.29	□□□□□ -1.24
TFB4	YPR056W	CTH1	P47976	325 aa		7.29	□□□□□ -1.24
TFB4	YPR056W	SVL3	Q03088	825 aa	Known RBP	7.29	□□□□□ -1.24
TFB4	YPR056W	VMS1	Q04311	632 aa	Known RBP	7.29	□□□□□ -1.24
TFB4	YPR056W	YOR059C	Q08448	450 aa	Known RBP	7.29	□□□□□ -1.24
TFB4	YPR056W	BLI1	P35727	113 aa		7.28	□□□□□ -1.24
TFB4	YPR056W	PHO4	P07270	312 aa	Known RBP	7.27	□□□□□ -1.25
TFB4	YPR056W	MCM2	P29469	868 aa		7.27	□□□□□ -1.25
TFB4	YPR056W	LIP5	P32875	414 aa		7.27	□□□□□ -1.25
TFB4	YPR056W	NUP82	P40368	713 aa		7.27	□□□□□ -1.25
TFB4	YPR056W	CIT3	P43635	486 aa		7.27	□□□□□ -1.25
TFB4	YPR056W	MON1	P53129	644 aa		7.27	□□□□□ -1.25
TFB4	YPR056W	YKL077W	P36081	392 aa		7.26	□□□□□ -1.25
TFB4	YPR056W	CRP1	P38845	465 aa	Known RBP	7.26	□□□□□ -1.25
TFB4	YPR056W	DAK2	P43550	591 aa		7.26	□□□□□ -1.25
TFB4	YPR056W	FOL1	P53848	824 aa		7.26	□□□□□ -1.25
TFB4	YPR056W	NOG1	Q02892	647 aa	Known RBP	7.26	□□□□□ -1.25
TFB4	YPR056W	SPR28	Q04921	423 aa		7.26	□□□□□ -1.25
TFB4	YPR056W	ESF1	Q06344	628 aa	Known RBP	7.26	□□□□□ -1.25
TFB4	YPR056W	MRC1	P25588	1096 aa		7.25	□□□□□ -1.25
TFB4	YPR056W	NFU1	P32860	256 aa		7.25	□□□□□ -1.25
TFB4	YPR056W	EXO5	P38289	585 aa		7.25	□□□□□ -1.25
TFB4	YPR056W	MEH1	Q02205	184 aa		7.25	□□□□□ -1.25
TFB4	YPR056W	NSI1	Q12457	570 aa		7.25	□□□□□ -1.25
TFB4	YPR056W	TY1A-LR4	P0C2I8	440 aa	Known RBP	7.24	□□□□□ -1.25
TFB4	YPR056W	TY1A-DR6	P0CX70	440 aa		7.24	□□□□□ -1.25
TFB4	YPR056W	TY1A-ER1	P0CX71	440 aa		7.24	□□□□□ -1.25
TFB4	YPR056W	TY1A-LR2	P0CX72	440 aa		7.24	□□□□□ -1.25
TFB4	YPR056W	TY1A-PL	P0CX73	440 aa		7.24	□□□□□ -1.25
TFB4	YPR056W	TY1A-JR1	P0CX74	440 aa		7.24	□□□□□ -1.25

Retrieved 100 of 5,963 RNA–protein pairs in 10.2 ms