RNA–Protein interactions for RNA: YKL172W

EBP2, Transcript of Required for 25S rRNA maturation and 60S ribosomal subunit assembly, yeast

Gene EBP2, Length 1,284 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
EBP2	YKL172W	VPS53	P47061	822 aa		6.38	□□□□□ -1.39
EBP2	YKL172W	YGR045C	P53229	120 aa		6.38	□□□□□ -1.39
EBP2	YKL172W	SLN1	P39928	1220 aa	Predicted RBP	6.37	□□□□□ -1.39
EBP2	YKL172W	ELA1	P53861	379 aa	Predicted RBP	6.37	□□□□□ -1.39
EBP2	YKL172W	DED1	P06634	604 aa	Known RBP	6.36	□□□□□ -1.39
EBP2	YKL172W	SMY2	P32909	740 aa	Known RBP	6.36	□□□□□ -1.39
EBP2	YKL172W	DUT1	P33317	147 aa		6.36	□□□□□ -1.39
EBP2	YKL172W	GPT2	P36148	743 aa		6.36	□□□□□ -1.39
EBP2	YKL172W	HXT13	P39924	564 aa		6.36	□□□□□ -1.39
EBP2	YKL172W	HXT17	P53631	564 aa		6.36	□□□□□ -1.39
EBP2	YKL172W	HXT15	P54854	567 aa		6.36	□□□□□ -1.39
EBP2	YKL172W	ROD1	Q02805	837 aa		6.36	□□□□□ -1.39
EBP2	YKL172W	GDE1	Q02979	1223 aa		6.36	□□□□□ -1.39
EBP2	YKL172W	MAG2	Q06436	670 aa	Known RBP	6.36	□□□□□ -1.39
EBP2	YKL172W	GIC2	Q06648	383 aa		6.36	□□□□□ -1.39
EBP2	YKL172W	COQ2	P32378	372 aa		6.35	□□□□□ -1.39
EBP2	YKL172W	MKK2	P32491	506 aa		6.35	□□□□□ -1.39
EBP2	YKL172W	VAC8	P39968	578 aa		6.35	□□□□□ -1.39
EBP2	YKL172W	MSH4	P40965	878 aa	Predicted RBP	6.35	□□□□□ -1.39
EBP2	YKL172W	YGR053C	P53234	283 aa		6.35	□□□□□ -1.39
EBP2	YKL172W	YNR063W	P53749	607 aa		6.35	□□□□□ -1.39
EBP2	YKL172W	ALD6	P54115	500 aa	Known RBP	6.35	□□□□□ -1.39
EBP2	YKL172W	SYP1	P25623	870 aa	Known RBP	6.34	□□□□□ -1.39
EBP2	YKL172W	HRK1	Q08732	759 aa	Known RBP	6.34	□□□□□ -1.39
EBP2	YKL172W	NFS1	P25374	497 aa		6.33	□□□□□ -1.4
EBP2	YKL172W	LYP1	P32487	611 aa		6.33	□□□□□ -1.4
EBP2	YKL172W	PGM1	P33401	570 aa	Known RBP	6.33	□□□□□ -1.4
EBP2	YKL172W	RER2	P35196	286 aa		6.33	□□□□□ -1.4
EBP2	YKL172W	SAF1	P38352	637 aa		6.33	□□□□□ -1.4
EBP2	YKL172W	AKR1	P39010	764 aa		6.33	□□□□□ -1.4
EBP2	YKL172W	SNF7	P39929	240 aa	Known RBP	6.33	□□□□□ -1.4
EBP2	YKL172W	CNN1	P43618	361 aa		6.33	□□□□□ -1.4
EBP2	YKL172W	FAA4	P47912	694 aa	Known RBP	6.33	□□□□□ -1.4
EBP2	YKL172W	ALT1	P52893	592 aa		6.33	□□□□□ -1.4
EBP2	YKL172W	SPO20	Q04359	397 aa		6.33	□□□□□ -1.4
EBP2	YKL172W	RSA3	Q05942	220 aa	Known RBP	6.33	□□□□□ -1.4
EBP2	YKL172W	PTC5	Q12511	572 aa		6.33	□□□□□ -1.4
EBP2	YKL172W	TRP2	P00899	507 aa	Known RBP	6.32	□□□□□ -1.4
EBP2	YKL172W	MMM1	P41800	426 aa		6.32	□□□□□ -1.4
EBP2	YKL172W	TYW3	P53177	273 aa		6.32	□□□□□ -1.4
EBP2	YKL172W	YPL034W	Q03083	165 aa		6.32	□□□□□ -1.4
EBP2	YKL172W	YLR257W	Q06146	321 aa	Known RBP	6.32	□□□□□ -1.4
EBP2	YKL172W	YOR059C	Q08448	450 aa	Known RBP	6.32	□□□□□ -1.4
EBP2	YKL172W	DBP5	P20449	482 aa	Known RBP	6.31	□□□□□ -1.4
EBP2	YKL172W	RET1	P22276	1149 aa	Known RBP	6.31	□□□□□ -1.4
EBP2	YKL172W	AFG2	P32794	780 aa		6.31	□□□□□ -1.4
EBP2	YKL172W	ALG3	P38179	458 aa		6.31	□□□□□ -1.4
EBP2	YKL172W	RGD1	P38339	666 aa		6.31	□□□□□ -1.4
EBP2	YKL172W	QNS1	P38795	714 aa	Known RBP	6.31	□□□□□ -1.4
EBP2	YKL172W	HNT2	P49775	206 aa		6.31	□□□□□ -1.4
EBP2	YKL172W	EEB1	Q02891	456 aa		6.31	□□□□□ -1.4
EBP2	YKL172W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	6.31	□□□□□ -1.4	not detected
EBP2	YKL172W	MCA1	Q08601	432 aa		6.31	□□□□□ -1.4
EBP2	YKL172W	WRS1	Q12109	432 aa	Known RBP	6.31	□□□□□ -1.4
EBP2	YKL172W	RPS4A	P0CX35	261 aa	Known RBP	6.3	□□□□□ -1.4
EBP2	YKL172W	RPS4B	P0CX36	261 aa	Known RBP	6.3	□□□□□ -1.4
EBP2	YKL172W	CHS2	P14180	963 aa		6.3	□□□□□ -1.4
EBP2	YKL172W	CIT3	P43635	486 aa		6.3	□□□□□ -1.4
EBP2	YKL172W	CCT8	P47079	568 aa	Known RBP	6.3	□□□□□ -1.4
EBP2	YKL172W	RAT1	Q02792	1006 aa	Known RBP	6.3	□□□□□ -1.4
EBP2	YKL172W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	6.3	□□□□□ -1.4	not detected
EBP2	YKL172W	YPL260W	Q08977	551 aa		6.3	□□□□□ -1.4
EBP2	YKL172W	FAL1	Q12099	399 aa	Known RBP	6.3	□□□□□ -1.4
EBP2	YKL172W	SSF2	Q12153	453 aa	Predicted RBP	6.29	□□□□□ -1.4
EBP2	YKL172W	NSI1	Q12457	570 aa		6.29	□□□□□ -1.4
EBP2	YKL172W	NAM7	P30771	971 aa	Known RBP	6.28	□□□□□ -1.4
EBP2	YKL172W	KAE1	P36132	386 aa		6.28	□□□□□ -1.4
EBP2	YKL172W	YJL049W	P47048	450 aa		6.28	□□□□□ -1.4
EBP2	YKL172W	NNF1	P47149	201 aa		6.28	□□□□□ -1.4
EBP2	YKL172W	TPP1	Q03796	238 aa		6.28	□□□□□ -1.4
EBP2	YKL172W	TIF35	Q04067	274 aa	Known RBP	6.28	□□□□□ -1.4
EBP2	YKL172W	OPI10	Q08202	246 aa		6.28	□□□□□ -1.4
EBP2	YKL172W	PUS7	Q08647	676 aa	Known RBP	6.28	□□□□□ -1.4
EBP2	YKL172W	RKM4	Q12504	494 aa		6.28	□□□□□ -1.4
EBP2	YKL172W	MSB1	P21339	1137 aa	Known RBP	6.27	□□□□□ -1.41
EBP2	YKL172W	MCM7	P38132	845 aa		6.27	□□□□□ -1.41
EBP2	YKL172W	MTC5	Q03897	1148 aa		6.27	□□□□□ -1.41
EBP2	YKL172W	AGP1	P25376	633 aa		6.26	□□□□□ -1.41
EBP2	YKL172W	AOS1	Q06624	347 aa		6.26	□□□□□ -1.41
EBP2	YKL172W	GNT1	Q12096	491 aa		6.26	□□□□□ -1.41
EBP2	YKL172W	YLR122C	Q12312	125 aa		6.26	□□□□□ -1.41
EBP2	YKL172W	INO1	P11986	533 aa		6.25	□□□□□ -1.41
EBP2	YKL172W	BAS1	P22035	811 aa		6.25	□□□□□ -1.41
EBP2	YKL172W	SBA1	P28707	216 aa	Known RBP	6.25	□□□□□ -1.41
EBP2	YKL172W	KIP1	P28742	1111 aa		6.25	□□□□□ -1.41
EBP2	YKL172W	YKL107W	P34251	309 aa		6.25	□□□□□ -1.41
EBP2	YKL172W	WHI3	P34761	661 aa	Known RBP	6.25	□□□□□ -1.41
EBP2	YKL172W	RPN3	P40016	523 aa	Known RBP	6.25	□□□□□ -1.41
EBP2	YKL172W	MPH1	P40562	993 aa		6.25	□□□□□ -1.41
EBP2	YKL172W	LSB3	P43603	459 aa	Known RBP	6.25	□□□□□ -1.41
EBP2	YKL172W	YJL045W	P47052	634 aa		6.25	□□□□□ -1.41
EBP2	YKL172W	SPO21	Q12411	609 aa		6.25	□□□□□ -1.41
EBP2	YKL172W	MLS1	P30952	554 aa		6.24	□□□□□ -1.41
EBP2	YKL172W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	6.24	□□□□□ -1.41	not detected
EBP2	YKL172W	RCM1	P53972	490 aa		6.24	□□□□□ -1.41
EBP2	YKL172W	SHE9	Q04172	456 aa		6.24	□□□□□ -1.41
EBP2	YKL172W	TDA5	Q06417	326 aa	Known RBP	6.24	□□□□□ -1.41
EBP2	YKL172W	PRI2	P20457	528 aa		6.23	□□□□□ -1.41
EBP2	YKL172W	YVC1	Q12324	675 aa		6.23	□□□□□ -1.41
EBP2	YKL172W	COQ4	O13525	335 aa		6.22	□□□□□ -1.41

Retrieved 100 of 5,963 RNA–protein pairs in 29.4 ms