RNA–Protein interactions for RNA: YKL145W

RPT1, Transcript of ATPase of the 19S regulatory particle of the 26S proteasome, yeast

Gene RPT1, Length 1,404 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPT1	YKL145W	PHM7	Q12252	991 aa		6.66	□□□□□ -1.34
RPT1	YKL145W	TIM23	P32897	222 aa		6.65	□□□□□ -1.35
RPT1	YKL145W	SER1	P33330	395 aa	Known RBP	6.65	□□□□□ -1.35
RPT1	YKL145W	RRD1	P40454	393 aa	Known RBP	6.65	□□□□□ -1.35
RPT1	YKL145W	SUT1	P53032	299 aa	Known RBP	6.65	□□□□□ -1.35
RPT1	YKL145W	SPO1	P53541	631 aa		6.65	□□□□□ -1.35
RPT1	YKL145W	MDG1	P53885	366 aa		6.65	□□□□□ -1.35
RPT1	YKL145W	BUD20	Q08004	166 aa	Predicted RBP	6.65	□□□□□ -1.35
RPT1	YKL145W	BUG1	Q12191	341 aa		6.65	□□□□□ -1.35
RPT1	YKL145W	RPS19A	P07280	144 aa	Known RBP	6.64	□□□□□ -1.35
RPT1	YKL145W	RPS19B	P07281	144 aa	Predicted RBP	6.64	□□□□□ -1.35
RPT1	YKL145W	YNG2	P38806	282 aa	Known RBP	6.64	□□□□□ -1.35
RPT1	YKL145W	PMC1	P38929	1173 aa	Predicted RBP	6.64	□□□□□ -1.35
RPT1	YKL145W	MSH4	P40965	878 aa	Predicted RBP	6.64	□□□□□ -1.35
RPT1	YKL145W	CTH1	P47976	325 aa		6.64	□□□□□ -1.35
RPT1	YKL145W	GDE1	Q02979	1223 aa		6.64	□□□□□ -1.35
RPT1	YKL145W	PKH1	Q03407	766 aa		6.64	□□□□□ -1.35
RPT1	YKL145W	NYV1	Q12255	253 aa		6.64	□□□□□ -1.35
RPT1	YKL145W	YBL086C	P38177	466 aa		6.63	□□□□□ -1.35
RPT1	YKL145W	HXT5	P38695	592 aa		6.63	□□□□□ -1.35
RPT1	YKL145W	BOI2	P39969	1040 aa		6.63	□□□□□ -1.35
RPT1	YKL145W	SPF1	P39986	1215 aa	Known RBP	6.63	□□□□□ -1.35
RPT1	YKL145W	RSC4	Q02206	625 aa		6.63	□□□□□ -1.35
RPT1	YKL145W	NAN1	Q02931	896 aa	Known RBP	6.63	□□□□□ -1.35
RPT1	YKL145W	NOC3	Q07896	663 aa	Predicted RBP	6.63	□□□□□ -1.35
RPT1	YKL145W	PHO8	P11491	566 aa		6.62	□□□□□ -1.35
RPT1	YKL145W	CDC34	P14682	295 aa		6.62	□□□□□ -1.35
RPT1	YKL145W	YHR020W	P38708	688 aa	Known RBP	6.62	□□□□□ -1.35
RPT1	YKL145W	TDA5	Q06417	326 aa	Known RBP	6.62	□□□□□ -1.35
RPT1	YKL145W	LPD1	P09624	499 aa	Known RBP	6.61	□□□□□ -1.35
RPT1	YKL145W	MRPL33	P20084	86 aa		6.61	□□□□□ -1.35
RPT1	YKL145W	DUT1	P33317	147 aa		6.61	□□□□□ -1.35
RPT1	YKL145W	NAB3	P38996	802 aa	Known RBP RIP-Chip data	6.61	□□□□□ -1.35	not detected
RPT1	YKL145W	TIM54	P47045	478 aa		6.61	□□□□□ -1.35
RPT1	YKL145W	ELP4	Q02884	456 aa	Known RBP	6.61	□□□□□ -1.35
RPT1	YKL145W	FCP1	Q03254	732 aa		6.61	□□□□□ -1.35
RPT1	YKL145W	CTI6	Q08923	506 aa		6.61	□□□□□ -1.35
RPT1	YKL145W	PRI2	P20457	528 aa		6.6	□□□□□ -1.35
RPT1	YKL145W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	6.6	□□□□□ -1.35	not detected
RPT1	YKL145W	SMC1	P32908	1225 aa		6.6	□□□□□ -1.35
RPT1	YKL145W	YHL008C	P38750	627 aa		6.6	□□□□□ -1.35
RPT1	YKL145W	YEN1	P40028	759 aa		6.6	□□□□□ -1.35
RPT1	YKL145W	RRN7	P40992	514 aa		6.6	□□□□□ -1.35
RPT1	YKL145W	YGR053C	P53234	283 aa		6.6	□□□□□ -1.35
RPT1	YKL145W	YNL035C	P53962	389 aa	Known RBP	6.6	□□□□□ -1.35
RPT1	YKL145W	BSC2	Q05611	235 aa		6.6	□□□□□ -1.35
RPT1	YKL145W	OPI10	Q08202	246 aa		6.6	□□□□□ -1.35
RPT1	YKL145W	YLR125W	Q12138	136 aa		6.6	□□□□□ -1.35
RPT1	YKL145W	PRE9	P23638	258 aa	Known RBP	6.59	□□□□□ -1.35
RPT1	YKL145W	UTR2	P32623	467 aa		6.59	□□□□□ -1.35
RPT1	YKL145W	YKL069W	P36088	180 aa		6.59	□□□□□ -1.35
RPT1	YKL145W	UTP22	P53254	1237 aa	Predicted RBP	6.59	□□□□□ -1.35
RPT1	YKL145W	RIX7	Q07844	837 aa	Known RBP	6.59	□□□□□ -1.35
RPT1	YKL145W	MCD1	Q12158	566 aa		6.59	□□□□□ -1.35
RPT1	YKL145W	MRPS18	P42847	217 aa		6.59	□□□□□ -1.36
RPT1	YKL145W	ULI1	P43604	169 aa		6.59	□□□□□ -1.36
RPT1	YKL145W	ITC1	P53125	1264 aa		6.59	□□□□□ -1.36
RPT1	YKL145W	TYW3	P53177	273 aa		6.59	□□□□□ -1.36
RPT1	YKL145W	HAP5	Q02516	242 aa		6.59	□□□□□ -1.36
RPT1	YKL145W	MOD5	P07884	428 aa		6.58	□□□□□ -1.36
RPT1	YKL145W	GCD7	P32502	381 aa	Predicted RBP	6.58	□□□□□ -1.36
RPT1	YKL145W	UGA2	P38067	497 aa		6.58	□□□□□ -1.36
RPT1	YKL145W	DAL4	Q04895	635 aa		6.58	□□□□□ -1.36
RPT1	YKL145W	PSH1	Q12161	406 aa		6.58	□□□□□ -1.36
RPT1	YKL145W	GIN4	Q12263	1142 aa		6.58	□□□□□ -1.36
RPT1	YKL145W	SLA1	P32790	1244 aa		6.57	□□□□□ -1.36
RPT1	YKL145W	TOS1	P38288	455 aa		6.57	□□□□□ -1.36
RPT1	YKL145W	HXT8	P40886	569 aa		6.57	□□□□□ -1.36
RPT1	YKL145W	EMW1	P42842	904 aa	Known RBP	6.57	□□□□□ -1.36
RPT1	YKL145W	YPQ2	Q06328	317 aa		6.57	□□□□□ -1.36
RPT1	YKL145W	IOC2	Q12072	812 aa		6.57	□□□□□ -1.36
RPT1	YKL145W	MCM1	P11746	286 aa		6.56	□□□□□ -1.36
RPT1	YKL145W	SRM1	P21827	482 aa		6.56	□□□□□ -1.36
RPT1	YKL145W	CRP1	P38845	465 aa	Known RBP	6.56	□□□□□ -1.36
RPT1	YKL145W	RAT1	Q02792	1006 aa	Known RBP	6.56	□□□□□ -1.36
RPT1	YKL145W	YPL109C	Q02981	657 aa		6.56	□□□□□ -1.36
RPT1	YKL145W	ISU1	Q03020	165 aa		6.56	□□□□□ -1.36
RPT1	YKL145W	FLC1	Q08967	793 aa		6.56	□□□□□ -1.36
RPT1	YKL145W	CCP1	P00431	361 aa		6.55	□□□□□ -1.36
RPT1	YKL145W	PRT1	P06103	763 aa	Known RBP	6.55	□□□□□ -1.36
RPT1	YKL145W	RPC31	P17890	251 aa		6.55	□□□□□ -1.36
RPT1	YKL145W	VMA3	P25515	160 aa		6.55	□□□□□ -1.36
RPT1	YKL145W	THI4	P32318	326 aa		6.55	□□□□□ -1.36
RPT1	YKL145W	SCD5	P34758	872 aa		6.55	□□□□□ -1.36
RPT1	YKL145W	GRX7	P38068	203 aa		6.55	□□□□□ -1.36
RPT1	YKL145W	TIF11	P38912	153 aa	Known RBP	6.55	□□□□□ -1.36
RPT1	YKL145W	RSP5	P39940	809 aa	Known RBP	6.55	□□□□□ -1.36
RPT1	YKL145W	BDP1	P46678	594 aa		6.55	□□□□□ -1.36
RPT1	YKL145W	YCS4	Q06156	1176 aa		6.55	□□□□□ -1.36
RPT1	YKL145W	NOP14	Q99207	810 aa	Known RBP	6.55	□□□□□ -1.36
RPT1	YKL145W	SSK22	P25390	1331 aa	Predicted RBP	6.54	□□□□□ -1.36
RPT1	YKL145W	ERR1	P0CX10	437 aa		6.54	□□□□□ -1.36
RPT1	YKL145W	ERR2	P0CX11	437 aa		6.54	□□□□□ -1.36
RPT1	YKL145W	PAT1	P25644	796 aa	Known RBP	6.54	□□□□□ -1.36
RPT1	YKL145W	KIP2	P28743	706 aa		6.54	□□□□□ -1.36
RPT1	YKL145W	SEC6	P32844	805 aa		6.54	□□□□□ -1.36
RPT1	YKL145W	RFC1	P38630	861 aa	Known RBP	6.54	□□□□□ -1.36
RPT1	YKL145W	NKP2	Q06162	153 aa		6.54	□□□□□ -1.36
RPT1	YKL145W	PMD1	P32634	1753 aa		6.54	□□□□□ -1.36
RPT1	YKL145W	MRC1	P25588	1096 aa		6.53	□□□□□ -1.36

Retrieved 100 of 5,963 RNA–protein pairs in 14.1 ms