RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C RGD2P43556 714 aa7.03□□□□□ -1.28
DEF1YKL054C HSV2P50079 448 aaPredicted RBP7.03□□□□□ -1.28
DEF1YKL054C ERP6P53198 216 aa7.03□□□□□ -1.28
DEF1YKL054C EAF1Q06337 982 aa7.03□□□□□ -1.28
DEF1YKL054C FLP1P03870 423 aa7.02□□□□□ -1.29
DEF1YKL054C GDH3P39708 457 aa7.02□□□□□ -1.29
DEF1YKL054C NUP145P49687 1317 aa7.02□□□□□ -1.29
DEF1YKL054C RKM3P38222 552 aa7.01□□□□□ -1.29
DEF1YKL054C SEC26P41810 973 aaKnown RBP7.01□□□□□ -1.29
DEF1YKL054C SSH4P32343 579 aa7.01□□□□□ -1.29
DEF1YKL054C ASH1P34233 588 aa7.01□□□□□ -1.29
DEF1YKL054C AMN1P38285 549 aaPredicted RBP7.01□□□□□ -1.29
DEF1YKL054C KRE33P53914 1056 aaKnown RBP7.01□□□□□ -1.29
DEF1YKL054C CTR9P89105 1077 aa7.01□□□□□ -1.29
DEF1YKL054C APA1P16550 321 aaKnown RBP7□□□□□ -1.29
DEF1YKL054C AFT1P22149 690 aa7□□□□□ -1.29
DEF1YKL054C VMA3P25515 160 aa7□□□□□ -1.29
DEF1YKL054C FBP26P32604 452 aa7□□□□□ -1.29
DEF1YKL054C HSP78P33416 811 aa7□□□□□ -1.29
DEF1YKL054C MRP8P35719 219 aa7□□□□□ -1.29
DEF1YKL054C MDM12Q92328 271 aa7□□□□□ -1.29
DEF1YKL054C ARE1P25628 610 aa7□□□□□ -1.29
DEF1YKL054C ABD1P32783 436 aaPredicted RBP7□□□□□ -1.29
DEF1YKL054C BNA1P47096 177 aa7□□□□□ -1.29
DEF1YKL054C ISU1Q03020 165 aa7□□□□□ -1.29
DEF1YKL054C YPQ2Q06328 317 aa7□□□□□ -1.29
DEF1YKL054C TMA46Q12000 345 aaKnown RBP7□□□□□ -1.29
DEF1YKL054C TY4B-PA0A0B7P3V8 1104 aa6.99□□□□□ -1.29
DEF1YKL054C COBP00163 385 aa6.99□□□□□ -1.29
DEF1YKL054C MKS1P34072 584 aa6.99□□□□□ -1.29
DEF1YKL054C HXT13P39924 564 aa6.99□□□□□ -1.29
DEF1YKL054C MGS1P40151 587 aa6.99□□□□□ -1.29
DEF1YKL054C NTA1P40354 457 aa6.99□□□□□ -1.29
DEF1YKL054C HUL4P40985 892 aa6.99□□□□□ -1.29
DEF1YKL054C HXT17P53631 564 aa6.99□□□□□ -1.29
DEF1YKL054C HXT15P54854 567 aa6.99□□□□□ -1.29
DEF1YKL054C FAP7Q12055 197 aaPredicted RBP6.99□□□□□ -1.29
DEF1YKL054C RRP6Q12149 733 aaKnown RBP6.99□□□□□ -1.29
DEF1YKL054C TIF6Q12522 245 aaKnown RBP6.99□□□□□ -1.29
DEF1YKL054C TY4A-HQ6Q5P6 413 aa6.99□□□□□ -1.29
DEF1YKL054C TFC4P33339 1025 aa6.99□□□□□ -1.29
DEF1YKL054C YML131WQ03102 365 aa6.99□□□□□ -1.29
DEF1YKL054C TRP2P00899 507 aaKnown RBP6.98□□□□□ -1.29
DEF1YKL054C STE6P12866 1290 aa6.98□□□□□ -1.29
DEF1YKL054C SBA1P28707 216 aaKnown RBP6.98□□□□□ -1.29
DEF1YKL054C NDE1P40215 560 aa6.98□□□□□ -1.29
DEF1YKL054C DUR3P33413 735 aa6.97□□□□□ -1.29
DEF1YKL054C NMD3P38861 518 aaKnown RBP6.97□□□□□ -1.29
DEF1YKL054C DFG5Q05031 458 aa6.97□□□□□ -1.29
DEF1YKL054C CDC31P06704 161 aaKnown RBP6.97□□□□□ -1.29
DEF1YKL054C TRK1P12685 1235 aa6.97□□□□□ -1.29
DEF1YKL054C SWI3P32591 825 aa6.97□□□□□ -1.29
DEF1YKL054C MRS6P32864 603 aaKnown RBP6.97□□□□□ -1.29
DEF1YKL054C PBY1P38254 753 aa6.97□□□□□ -1.29
DEF1YKL054C RAD55P38953 406 aa6.97□□□□□ -1.29
DEF1YKL054C RSC8P43609 557 aaKnown RBP6.97□□□□□ -1.29
DEF1YKL054C MSB3P48566 633 aaPredicted RBP6.97□□□□□ -1.29
DEF1YKL054C CMR1Q12510 522 aaKnown RBP6.97□□□□□ -1.29
DEF1YKL054C PTP2P29461 750 aa6.96□□□□□ -1.29
DEF1YKL054C APL2P36000 726 aaPredicted RBP6.96□□□□□ -1.29
DEF1YKL054C MUM2P38236 366 aa6.96□□□□□ -1.29
DEF1YKL054C PSY2P40164 858 aa6.96□□□□□ -1.29
DEF1YKL054C ALA1P40825 983 aaKnown RBP6.96□□□□□ -1.29
DEF1YKL054C SRB7P47822 140 aa6.96□□□□□ -1.29
DEF1YKL054C HEM13P11353 328 aaKnown RBP6.96□□□□□ -1.3
DEF1YKL054C KAR2P16474 682 aaKnown RBP6.96□□□□□ -1.3
DEF1YKL054C IRS4P36115 615 aaKnown RBP6.96□□□□□ -1.3
DEF1YKL054C TYS1P36421 394 aaKnown RBP6.96□□□□□ -1.3
DEF1YKL054C BAP2P38084 609 aa6.96□□□□□ -1.3
DEF1YKL054C GIC2Q06648 383 aa6.96□□□□□ -1.3
DEF1YKL054C VIP1Q06685 1146 aaKnown RBP6.96□□□□□ -1.3
DEF1YKL054C MRL1Q06815 381 aa6.96□□□□□ -1.3
DEF1YKL054C INH1P01097 85 aa6.95□□□□□ -1.3
DEF1YKL054C MSN1P22148 382 aa6.95□□□□□ -1.3
DEF1YKL054C GEM1P39722 662 aa6.95□□□□□ -1.3
DEF1YKL054C MTQ2Q03920 221 aaPredicted RBP6.95□□□□□ -1.3
DEF1YKL054C PSR2Q07949 397 aa6.95□□□□□ -1.3
DEF1YKL054C TRE2Q08693 809 aa6.95□□□□□ -1.3
DEF1YKL054C DBF20P32328 564 aa6.95□□□□□ -1.3
DEF1YKL054C RER2P35196 286 aa6.95□□□□□ -1.3
DEF1YKL054C YHL041WP38730 149 aa6.95□□□□□ -1.3
DEF1YKL054C ESL1P40456 1118 aa6.95□□□□□ -1.3
DEF1YKL054C XKS1P42826 600 aa6.95□□□□□ -1.3
DEF1YKL054C SDA1P53313 767 aaKnown RBP6.95□□□□□ -1.3
DEF1YKL054C NPL3Q01560 414 aaKnown RBP RIP-Chip data6.95□□□□□ -1.3 RIP-Chip
DEF1YKL054C REH1Q06709 432 aa6.95□□□□□ -1.3
DEF1YKL054C NHA1Q99271 985 aa6.95□□□□□ -1.3
DEF1YKL054C MCM1P11746 286 aa6.94□□□□□ -1.3
DEF1YKL054C SCD5P34758 872 aa6.94□□□□□ -1.3
DEF1YKL054C APM2P38700 605 aa6.94□□□□□ -1.3
DEF1YKL054C YLR225CQ05948 407 aaKnown RBP6.94□□□□□ -1.3
DEF1YKL054C GRC3Q07845 632 aa6.94□□□□□ -1.3
DEF1YKL054C RRN3P36070 627 aa6.93□□□□□ -1.3
DEF1YKL054C NUT1P53114 1132 aa6.93□□□□□ -1.3
DEF1YKL054C PBP1P53297 722 aaKnown RBP6.93□□□□□ -1.3
DEF1YKL054C HST3P53687 447 aa6.93□□□□□ -1.3
DEF1YKL054C SSP2Q08646 371 aa6.93□□□□□ -1.3
DEF1YKL054C IMP2'P32351 346 aa6.93□□□□□ -1.3
DEF1YKL054C PTH2P34222 208 aa6.93□□□□□ -1.3
DEF1YKL054C ALR2P43553 858 aa6.93□□□□□ -1.3
Retrieved 100 of 5,963 RNA–protein pairs in 19.1 ms