RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeastyeast

Gene RPN11, Length 921 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPN11YFR004W ECM21P38167 1117 aaKnown RBP6.99□□□□□ -1.29
RPN11YFR004W SSF1P38789 453 aaPredicted RBP6.99□□□□□ -1.29
RPN11YFR004W HAL5P38970 855 aaKnown RBP6.99□□□□□ -1.29
RPN11YFR004W MXR1P40029 184 aa6.99□□□□□ -1.29
RPN11YFR004W SNU71P53207 620 aaKnown RBP6.99□□□□□ -1.29
RPN11YFR004W YNL108CP53929 270 aa6.99□□□□□ -1.29
RPN11YFR004W HAP5Q02516 242 aa6.99□□□□□ -1.29
RPN11YFR004W FPR4Q06205 392 aaPredicted RBP6.99□□□□□ -1.29
RPN11YFR004W RAD59Q12223 238 aa6.99□□□□□ -1.29
RPN11YFR004W SUT2Q12286 268 aa6.99□□□□□ -1.29
RPN11YFR004W TUS1Q06412 1307 aa6.99□□□□□ -1.29
RPN11YFR004W NOT3P06102 836 aaKnown RBP6.98□□□□□ -1.29
RPN11YFR004W PIF1P07271 859 aa6.98□□□□□ -1.29
RPN11YFR004W COG8Q04632 607 aa6.98□□□□□ -1.29
RPN11YFR004W YDR344CQ05510 147 aa6.98□□□□□ -1.29
RPN11YFR004W MDM20Q12387 796 aaKnown RBP6.98□□□□□ -1.29
RPN11YFR004W PRE10P21242 288 aaKnown RBP RIP-Chip data6.97□□□□□ -1.29not detected
RPN11YFR004W PUP1P25043 261 aa6.97□□□□□ -1.29
RPN11YFR004W PER1P25625 357 aa6.97□□□□□ -1.29
RPN11YFR004W AFG3P39925 761 aa6.97□□□□□ -1.29
RPN11YFR004W YML083CQ04526 418 aa6.97□□□□□ -1.29
RPN11YFR004W MET7Q08645 548 aa6.97□□□□□ -1.29
RPN11YFR004W RIM20Q12033 661 aa6.97□□□□□ -1.29
RPN11YFR004W BIK1P11709 440 aa6.96□□□□□ -1.3
RPN11YFR004W EUG1P32474 517 aa6.96□□□□□ -1.3
RPN11YFR004W AAP1P37898 856 aaKnown RBP6.96□□□□□ -1.3
RPN11YFR004W KTR3P38130 404 aaPredicted RBP6.96□□□□□ -1.3
RPN11YFR004W MLC1P53141 149 aa6.96□□□□□ -1.3
RPN11YFR004W MRPS35P53292 345 aa6.96□□□□□ -1.3
RPN11YFR004W BRE5P53741 515 aaKnown RBP6.96□□□□□ -1.3
RPN11YFR004W MRX10Q05648 414 aa6.96□□□□□ -1.3
RPN11YFR004W UBX5Q06682 500 aa6.96□□□□□ -1.3
RPN11YFR004W BRE1Q07457 700 aaKnown RBP6.96□□□□□ -1.3
RPN11YFR004W YDL124WQ07551 312 aaKnown RBP6.96□□□□□ -1.3
RPN11YFR004W AHC1Q12433 566 aa6.96□□□□□ -1.3
RPN11YFR004W ECM29P38737 1868 aa6.96□□□□□ -1.3
RPN11YFR004W CYB2P00175 591 aa6.95□□□□□ -1.3
RPN11YFR004W ESS1P22696 170 aa6.95□□□□□ -1.3
RPN11YFR004W SCJ1P25303 377 aa6.95□□□□□ -1.3
RPN11YFR004W SPT23P35210 1082 aa6.95□□□□□ -1.3
RPN11YFR004W BOI1P38041 980 aaKnown RBP6.95□□□□□ -1.3
RPN11YFR004W BDH2P39713 417 aa6.95□□□□□ -1.3
RPN11YFR004W TIF4631P39935 952 aaKnown RBP6.95□□□□□ -1.3
RPN11YFR004W YGL242CP53066 181 aa6.95□□□□□ -1.3
RPN11YFR004W RSC1P53236 928 aa6.95□□□□□ -1.3
RPN11YFR004W YNL193WP53870 558 aa6.95□□□□□ -1.3
RPN11YFR004W ALO1P54783 526 aaKnown RBP6.95□□□□□ -1.3
RPN11YFR004W RPL34AP87262 121 aaPredicted RBP6.95□□□□□ -1.3
RPN11YFR004W PKH3Q03306 898 aaPredicted RBP6.95□□□□□ -1.3
RPN11YFR004W HRQ1Q05549 1077 aa6.95□□□□□ -1.3
RPN11YFR004W ISU2Q12056 156 aa6.95□□□□□ -1.3
RPN11YFR004W RRI2Q12348 645 aa6.95□□□□□ -1.3
RPN11YFR004W MMP1Q12372 583 aa6.95□□□□□ -1.3
RPN11YFR004W YJU3P28321 313 aa6.94□□□□□ -1.3
RPN11YFR004W CST26P38226 397 aa6.94□□□□□ -1.3
RPN11YFR004W MSC7P38694 644 aa6.94□□□□□ -1.3
RPN11YFR004W RVS167P39743 482 aaKnown RBP6.94□□□□□ -1.3
RPN11YFR004W CIR1P42940 261 aa6.94□□□□□ -1.3
RPN11YFR004W YJR107WP47145 328 aa6.94□□□□□ -1.3
RPN11YFR004W PIP2P52960 996 aa6.94□□□□□ -1.3
RPN11YFR004W YDR034W-BQ6Q5X2 51 aa6.94□□□□□ -1.3
RPN11YFR004W ENO1P00924 437 aaKnown RBP6.93□□□□□ -1.3
RPN11YFR004W HEM3P28789 327 aa6.93□□□□□ -1.3
RPN11YFR004W GPB2P39717 880 aa6.93□□□□□ -1.3
RPN11YFR004W AIM9P40053 627 aaKnown RBP6.93□□□□□ -1.3
RPN11YFR004W PIB2P53191 635 aa6.93□□□□□ -1.3
RPN11YFR004W HST1P53685 503 aa6.93□□□□□ -1.3
RPN11YFR004W RPN7Q06103 429 aaKnown RBP6.93□□□□□ -1.3
RPN11YFR004W ENO2P00925 437 aaKnown RBP6.92□□□□□ -1.3
RPN11YFR004W VMA2P16140 517 aaKnown RBP6.92□□□□□ -1.3
RPN11YFR004W BCS1P32839 456 aa6.92□□□□□ -1.3
RPN11YFR004W RGT1P32862 1170 aa6.92□□□□□ -1.3
RPN11YFR004W DID4P36108 232 aa6.92□□□□□ -1.3
RPN11YFR004W KSP1P38691 1029 aaKnown RBP6.92□□□□□ -1.3
RPN11YFR004W STM1P39015 273 aaKnown RBP6.92□□□□□ -1.3
RPN11YFR004W ENT3P47160 408 aa6.92□□□□□ -1.3
RPN11YFR004W YML037CQ03703 340 aa6.92□□□□□ -1.3
RPN11YFR004W YPR109WQ06104 294 aa6.92□□□□□ -1.3
RPN11YFR004W KEL3Q08979 651 aaPredicted RBP6.92□□□□□ -1.3
RPN11YFR004W RPL19AP0CX82 189 aaKnown RBP6.91□□□□□ -1.3
RPN11YFR004W RPL19BP0CX83 189 aaPredicted RBP6.91□□□□□ -1.3
RPN11YFR004W KRS1P15180 591 aaKnown RBP6.91□□□□□ -1.3
RPN11YFR004W RPN12P32496 274 aa6.91□□□□□ -1.3
RPN11YFR004W GRX7P38068 203 aa6.91□□□□□ -1.3
RPN11YFR004W RKM3P38222 552 aa6.91□□□□□ -1.3
RPN11YFR004W PTC2P39966 464 aaKnown RBP6.91□□□□□ -1.3
RPN11YFR004W LCD1Q04377 747 aa6.91□□□□□ -1.3
RPN11YFR004W PEX19Q07418 342 aa6.91□□□□□ -1.3
RPN11YFR004W LAP2Q10740 671 aa6.91□□□□□ -1.3
RPN11YFR004W APC11Q12157 165 aa6.91□□□□□ -1.3
RPN11YFR004W PGA3Q12746 312 aaKnown RBP6.91□□□□□ -1.3
RPN11YFR004W HIP1P06775 603 aa6.9□□□□□ -1.3
RPN11YFR004W CAB3P36076 571 aa6.9□□□□□ -1.3
RPN11YFR004W PBY1P38254 753 aa6.9□□□□□ -1.3
RPN11YFR004W CTF18P49956 741 aa6.9□□□□□ -1.3
RPN11YFR004W BNI4P53858 892 aa6.9□□□□□ -1.3
RPN11YFR004W YAF9P53930 226 aa6.9□□□□□ -1.3
RPN11YFR004W DUS4Q06063 367 aa6.9□□□□□ -1.3
RPN11YFR004W CSC1Q06538 782 aa6.9□□□□□ -1.3
RPN11YFR004W PRE8P23639 250 aa6.89□□□□□ -1.31
Retrieved 100 of 5,963 RNA–protein pairs in 39.1 ms