RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C NMD3P38861 518 aaKnown RBP2.96□□□□□ -1.94
VPS54YDR027C GPI13Q07830 1017 aa2.96□□□□□ -1.94
VPS54YDR027C YDL177CQ12257 170 aa2.96□□□□□ -1.94
VPS54YDR027C NOG1Q02892 647 aaKnown RBP2.95□□□□□ -1.94
VPS54YDR027C XKS1P42826 600 aa2.95□□□□□ -1.94
VPS54YDR027C PEX13P80667 386 aa2.95□□□□□ -1.94
VPS54YDR027C UTP5Q04177 643 aaKnown RBP2.95□□□□□ -1.94
VPS54YDR027C RSA3Q05942 220 aaKnown RBP2.95□□□□□ -1.94
VPS54YDR027C HAT1Q12341 374 aa2.95□□□□□ -1.94
VPS54YDR027C MSH3P25336 1018 aa2.94□□□□□ -1.94
VPS54YDR027C RSM26P47141 266 aa2.94□□□□□ -1.94
VPS54YDR027C SAM35P14693 329 aa2.94□□□□□ -1.94
VPS54YDR027C KAR2P16474 682 aaKnown RBP2.94□□□□□ -1.94
VPS54YDR027C AIM26P32858 118 aa2.94□□□□□ -1.94
VPS54YDR027C SQT1P35184 431 aa2.94□□□□□ -1.94
VPS54YDR027C YNR063WP53749 607 aa2.94□□□□□ -1.94
VPS54YDR027C SNO2P53823 222 aa2.94□□□□□ -1.94
VPS54YDR027C UBP3Q01477 912 aaKnown RBP RIP-Chip data2.94□□□□□ -1.94not detected
VPS54YDR027C SOD2P00447 233 aa2.93□□□□□ -1.94
VPS54YDR027C TOD6P34219 525 aa2.93□□□□□ -1.94
VPS54YDR027C SPA2P23201 1466 aaKnown RBP2.93□□□□□ -1.94
VPS54YDR027C SRO9P25567 434 aaKnown RBP2.93□□□□□ -1.94
VPS54YDR027C PRP40P33203 583 aaKnown RBP2.93□□□□□ -1.94
VPS54YDR027C GEF1P37020 779 aa2.93□□□□□ -1.94
VPS54YDR027C HDA2Q06629 674 aa2.93□□□□□ -1.94
VPS54YDR027C YOR352WQ08816 343 aa2.93□□□□□ -1.94
VPS54YDR027C SCP160P06105 1222 aaKnown RBP RIP-Chip data2.92□□□□□ -1.94not detected
VPS54YDR027C VMA4P22203 233 aaKnown RBP2.92□□□□□ -1.94
VPS54YDR027C GCD6P32501 712 aaKnown RBP2.92□□□□□ -1.94
VPS54YDR027C YJL045WP47052 634 aa2.92□□□□□ -1.94
VPS54YDR027C NBA1Q08229 501 aaKnown RBP2.92□□□□□ -1.94
VPS54YDR027C RPS13P05756 151 aaKnown RBP2.92□□□□□ -1.94
VPS54YDR027C YPL277CQ08989 487 aa2.92□□□□□ -1.94
VPS54YDR027C VPS35P34110 944 aa2.91□□□□□ -1.94
VPS54YDR027C QNS1P38795 714 aaKnown RBP2.91□□□□□ -1.94
VPS54YDR027C PEX28P38848 579 aa2.91□□□□□ -1.94
VPS54YDR027C VPS53P47061 822 aa2.91□□□□□ -1.94
VPS54YDR027C ULP1Q02724 621 aa2.91□□□□□ -1.94
VPS54YDR027C DAL4Q04895 635 aa2.91□□□□□ -1.94
VPS54YDR027C YHL050CP38721 697 aa2.9□□□□□ -1.94
VPS54YDR027C YHR219WP38900 624 aa2.9□□□□□ -1.94
VPS54YDR027C ENV11P53246 860 aa2.9□□□□□ -1.94
VPS54YDR027C RKM2Q03942 479 aa2.9□□□□□ -1.94
VPS54YDR027C OXR1Q08952 273 aa2.9□□□□□ -1.94
VPS54YDR027C KOG1P38873 1557 aa2.9□□□□□ -1.94
VPS54YDR027C COQ4O13525 335 aa2.9□□□□□ -1.95
VPS54YDR027C SPS1P08458 490 aa2.9□□□□□ -1.95
VPS54YDR027C UGA4P32837 571 aa2.9□□□□□ -1.95
VPS54YDR027C ADD66P36040 267 aa2.9□□□□□ -1.95
VPS54YDR027C GSF2Q04697 403 aaKnown RBP2.9□□□□□ -1.95
VPS54YDR027C RSC58Q07979 502 aa2.9□□□□□ -1.95
VPS54YDR027C YLR358CO13565 187 aa2.89□□□□□ -1.95
VPS54YDR027C YSC84P32793 468 aa2.89□□□□□ -1.95
VPS54YDR027C PHO4P07270 312 aaKnown RBP2.88□□□□□ -1.95
VPS54YDR027C CCZ1P38273 704 aa2.88□□□□□ -1.95
VPS54YDR027C CLU1Q03690 1277 aaKnown RBP2.88□□□□□ -1.95
VPS54YDR027C EST2Q06163 884 aa2.88□□□□□ -1.95
VPS54YDR027C RSB1Q08417 382 aa2.88□□□□□ -1.95
VPS54YDR027C SPT20P50875 604 aa2.87□□□□□ -1.95
VPS54YDR027C YGL140CP53120 1219 aa2.87□□□□□ -1.95
VPS54YDR027C ADI1Q03677 179 aa2.87□□□□□ -1.95
VPS54YDR027C KIP1P28742 1111 aa2.87□□□□□ -1.95
VPS54YDR027C SHM2P37291 469 aaKnown RBP2.87□□□□□ -1.95
VPS54YDR027C RDH54P38086 958 aa2.87□□□□□ -1.95
VPS54YDR027C TNA1P53322 534 aa2.87□□□□□ -1.95
VPS54YDR027C SGD1Q06132 899 aa2.87□□□□□ -1.95
VPS54YDR027C PRE10P21242 288 aaKnown RBP RIP-Chip data2.86□□□□□ -1.95not detected
VPS54YDR027C ABZ1P37254 787 aaPredicted RBP2.86□□□□□ -1.95
VPS54YDR027C HNT2P49775 206 aa2.86□□□□□ -1.95
VPS54YDR027C PTC5Q12511 572 aa2.86□□□□□ -1.95
VPS54YDR027C CTS1P29029 562 aa2.86□□□□□ -1.95
VPS54YDR027C PPX1P38698 397 aa2.86□□□□□ -1.95
VPS54YDR027C LAM1P38851 1228 aa2.86□□□□□ -1.95
VPS54YDR027C GPB2P39717 880 aa2.86□□□□□ -1.95
VPS54YDR027C SEC26P41810 973 aaKnown RBP2.86□□□□□ -1.95
VPS54YDR027C THI12P42883 340 aa2.86□□□□□ -1.95
VPS54YDR027C THI5P43534 340 aa2.86□□□□□ -1.95
VPS54YDR027C DAK2P43550 591 aa2.86□□□□□ -1.95
VPS54YDR027C THI11P47183 340 aa2.86□□□□□ -1.95
VPS54YDR027C HOS3Q02959 697 aaKnown RBP2.86□□□□□ -1.95
VPS54YDR027C YPL109CQ02981 657 aa2.86□□□□□ -1.95
VPS54YDR027C THI13Q07748 340 aa2.86□□□□□ -1.95
VPS54YDR027C TUB2P02557 457 aaKnown RBP2.86□□□□□ -1.95
VPS54YDR027C DED1P06634 604 aaKnown RBP2.86□□□□□ -1.95
VPS54YDR027C STM1P39015 273 aaKnown RBP2.86□□□□□ -1.95
VPS54YDR027C YDR132CQ03900 495 aa2.86□□□□□ -1.95
VPS54YDR027C SEC23P15303 768 aaKnown RBP2.85□□□□□ -1.95
VPS54YDR027C MEF2P39677 819 aa2.85□□□□□ -1.95
VPS54YDR027C GCN5Q03330 439 aa2.85□□□□□ -1.95
VPS54YDR027C RCL1Q08096 367 aaPredicted RBP2.85□□□□□ -1.95
VPS54YDR027C CYC1P00044 109 aaPredicted RBP2.85□□□□□ -1.95
VPS54YDR027C PUF4P25339 888 aaKnown RBP RIP-Chip data2.85□□□□□ -1.95not detected
VPS54YDR027C MET4P32389 672 aa2.85□□□□□ -1.95
VPS54YDR027C TAT2P38967 592 aa2.85□□□□□ -1.95
VPS54YDR027C MPT5P39016 859 aaKnown RBP RIP-Chip data2.85□□□□□ -1.95not detected
VPS54YDR027C PIK1P39104 1066 aa2.85□□□□□ -1.95
VPS54YDR027C AFG2P32794 780 aa2.84□□□□□ -1.95
VPS54YDR027C SSF1P38789 453 aaPredicted RBP2.84□□□□□ -1.95
VPS54YDR027C TOS4Q06266 489 aa2.84□□□□□ -1.95
VPS54YDR027C HEM13P11353 328 aaKnown RBP2.84□□□□□ -1.96
Retrieved 100 of 5,963 RNA–protein pairs in 16.5 ms