RNA–Protein interactions for RNA: ENST00000482590.1

CLK1-212, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 626 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-212ENST00000482590 CCDC155Q8N6L0 562 aa11.37□□□□□ -0.59
CLK1-212ENST00000482590 CTSOP43234 321 aaPredicted RBP11.36□□□□□ -0.59
CLK1-212ENST00000482590 RELBQ01201 579 aa11.36□□□□□ -0.59
CLK1-212ENST00000482590 TARBP1Q13395 1621 aaKnown RBP11.35□□□□□ -0.59
CLK1-212ENST00000482590 USP17L8P0C7I0 530 aa11.35□□□□□ -0.59
CLK1-212ENST00000482590 NANOS1Q8WY41 292 aaKnown RBP11.35□□□□□ -0.59
CLK1-212ENST00000482590 CNTNAP3BQ96NU0 1288 aa11.35□□□□□ -0.59
CLK1-212ENST00000482590 INSM2Q96T92 566 aaPredicted RBP11.35□□□□□ -0.59
CLK1-212ENST00000482590 CNTNAP3Q9BZ76 1288 aa11.35□□□□□ -0.59
CLK1-212ENST00000482590 TMPRSS4Q9NRS4 437 aa11.35□□□□□ -0.59
CLK1-212ENST00000482590 SLC35F4A4IF30 521 aa11.34□□□□□ -0.59
CLK1-212ENST00000482590 NBPF20Q3BBV1 942 aa11.33□□□□□ -0.6
CLK1-212ENST00000482590 ZNF784Q8NCA9 323 aaPredicted RBP11.32□□□□□ -0.6
CLK1-212ENST00000482590 COL25A1Q9BXS0 654 aaPredicted RBP11.32□□□□□ -0.6
CLK1-212ENST00000482590 ZNF395Q9H8N7 513 aaPredicted RBP11.32□□□□□ -0.6
CLK1-212ENST00000482590 RFC5P40937 340 aa11.31□□□□□ -0.6
CLK1-212ENST00000482590 RAB15P59190 212 aa11.31□□□□□ -0.6
CLK1-212ENST00000482590 PNMA1Q8ND90 353 aa11.31□□□□□ -0.6
CLK1-212ENST00000482590 RNF217Q8TC41 542 aa11.31□□□□□ -0.6
CLK1-212ENST00000482590 ARHGEF11O15085 1522 aa11.3□□□□□ -0.6
CLK1-212ENST00000482590 ERVH48-1M5A8F1 160 aa11.3□□□□□ -0.6
CLK1-212ENST00000482590 LILRA1O75019 489 aa11.3□□□□□ -0.6
CLK1-212ENST00000482590 ADD1P35611 737 aaKnown RBP11.3□□□□□ -0.6
CLK1-212ENST00000482590 RNFT1Q5M7Z0 435 aa11.3□□□□□ -0.6
CLK1-212ENST00000482590 DZIP3Q86Y13 1208 aaKnown RBP11.3□□□□□ -0.6
CLK1-212ENST00000482590 POLMQ9NP87 494 aaPredicted RBP11.3□□□□□ -0.6
CLK1-212ENST00000482590 WDR97A6NE52 1622 aa11.3□□□□□ -0.6
CLK1-212ENST00000482590 POLA1P09884 1462 aaPredicted RBP11.3□□□□□ -0.6
CLK1-212ENST00000482590 ITGA6P23229 1130 aa11.29□□□□□ -0.6
CLK1-212ENST00000482590 GSK3AP49840 483 aa11.29□□□□□ -0.6
CLK1-212ENST00000482590 KDF1Q8NAX2 398 aaPredicted RBP11.29□□□□□ -0.6
CLK1-212ENST00000482590 ESPNB1AK53 854 aa11.28□□□□□ -0.6
CLK1-212ENST00000482590 ADH1AP07327 375 aa11.28□□□□□ -0.6
CLK1-212ENST00000482590 KCNMA1Q12791 1236 aa11.28□□□□□ -0.6
CLK1-212ENST00000482590 VWA5B2Q8N398 1253 aa11.28□□□□□ -0.6
CLK1-212ENST00000482590 PBRM1Q86U86 1689 aa11.27□□□□□ -0.6
CLK1-212ENST00000482590 SENP3-EIF4A1A0A087X0R7 540 aa11.27□□□□□ -0.61
CLK1-212ENST00000482590 TRIM34Q9BYJ4 488 aa11.27□□□□□ -0.61
CLK1-212ENST00000482590 FOXD4L5Q5VV16 416 aaPredicted RBP11.26□□□□□ -0.61
CLK1-212ENST00000482590 PTGIRP43119 386 aa11.25□□□□□ -0.61
CLK1-212ENST00000482590 AQRO60306 1485 aaKnown RBP eCLIP11.25□□□□□ -0.613e-11■■■■■ 29.2
CLK1-212ENST00000482590 CDC14CA4D256 554 aa11.24□□□□□ -0.61
CLK1-212ENST00000482590 SV2AQ7L0J3 742 aa11.24□□□□□ -0.61
CLK1-212ENST00000482590 ADAMTS8Q9UP79 889 aa11.24□□□□□ -0.61
CLK1-212ENST00000482590 FGD5Q6ZNL6 1462 aa11.24□□□□□ -0.61
CLK1-212ENST00000482590 ZNF385CQ66K41 422 aaPredicted RBP11.23□□□□□ -0.61
CLK1-212ENST00000482590 RAD54L2Q9Y4B4 1467 aa11.23□□□□□ -0.61
CLK1-212ENST00000482590 SLURP2P0DP57 97 aa11.22□□□□□ -0.61
CLK1-212ENST00000482590 RANGAP1P46060 587 aaPredicted RBP11.22□□□□□ -0.61
CLK1-212ENST00000482590 GOPCQ9HD26 462 aa11.22□□□□□ -0.61
CLK1-212ENST00000482590 CYLDQ9NQC7 956 aa11.22□□□□□ -0.61
CLK1-212ENST00000482590 CUX1P39880 1505 aa11.21□□□□□ -0.61
CLK1-212ENST00000482590 TMEM132AQ24JP5 1023 aa11.21□□□□□ -0.61
CLK1-212ENST00000482590 SEPT12Q8IYM1 358 aa11.21□□□□□ -0.61
CLK1-212ENST00000482590 WHAMMQ8TF30 809 aa11.21□□□□□ -0.61
CLK1-212ENST00000482590 SYNJ1O43426 1573 aa11.2□□□□□ -0.62
CLK1-212ENST00000482590 SNAPC4Q5SXM2 1469 aa11.2□□□□□ -0.62
CLK1-212ENST00000482590 SOGA1O94964 1423 aa11.2□□□□□ -0.62
CLK1-212ENST00000482590 TMEM259Q4ZIN3 620 aa11.2□□□□□ -0.62
CLK1-212ENST00000482590 LYSMD3Q7Z3D4 306 aa11.19□□□□□ -0.62
CLK1-212ENST00000482590 SVOPQ8N4V2 548 aa11.19□□□□□ -0.62
CLK1-212ENST00000482590 KCTD17Q8N5Z5 321 aa11.19□□□□□ -0.62
CLK1-212ENST00000482590 PCMTD1Q96MG8 357 aaPredicted RBP11.19□□□□□ -0.62
CLK1-212ENST00000482590 ZBBXA8MT70 800 aa11.18□□□□□ -0.62
CLK1-212ENST00000482590 GIGYF1O75420 1035 aaPredicted RBP11.18□□□□□ -0.62
CLK1-212ENST00000482590 GJD4Q96KN9 370 aaPredicted RBP11.18□□□□□ -0.62
CLK1-212ENST00000482590 CUEDC1Q9NWM3 386 aaPredicted RBP11.18□□□□□ -0.62
CLK1-212ENST00000482590 MAGI1Q96QZ7 1491 aaPredicted RBP11.18□□□□□ -0.62
CLK1-212ENST00000482590 RASSF7Q02833 373 aa11.17□□□□□ -0.62
CLK1-212ENST00000482590 CLASP1Q7Z460 1538 aa11.17□□□□□ -0.62
CLK1-212ENST00000482590 ARHGEF15O94989 841 aa11.16□□□□□ -0.62
CLK1-212ENST00000482590 FBXO45P0C2W1 286 aa11.16□□□□□ -0.62
CLK1-212ENST00000482590 RNF144AP50876 292 aaPredicted RBP11.16□□□□□ -0.62
CLK1-212ENST00000482590 TMEM151AQ8N4L1 468 aa11.16□□□□□ -0.62
CLK1-212ENST00000482590 PCDHB9Q9Y5E1 797 aa11.16□□□□□ -0.62
CLK1-212ENST00000482590 ARAP1Q96P48 1450 aa11.16□□□□□ -0.62
CLK1-212ENST00000482590 ABCA5Q8WWZ7 1642 aa11.16□□□□□ -0.62
CLK1-212ENST00000482590 TDRD9Q8NDG6 1382 aaKnown RBP11.16□□□□□ -0.62
CLK1-212ENST00000482590 GRIN2BQ13224 1484 aa11.15□□□□□ -0.62
CLK1-212ENST00000482590 PRICKLE2Q7Z3G6 844 aa11.15□□□□□ -0.62
CLK1-212ENST00000482590 ATP5J2-PTCD1G3V325 749 aa11.14□□□□□ -0.63
CLK1-212ENST00000482590 GDF11O95390 407 aa11.14□□□□□ -0.63
CLK1-212ENST00000482590 RNF225M0QZC1 329 aaPredicted RBP11.13□□□□□ -0.63
CLK1-212ENST00000482590 RHOQP17081 205 aa11.13□□□□□ -0.63
CLK1-212ENST00000482590 GAS6Q14393 721 aa11.13□□□□□ -0.63
CLK1-212ENST00000482590 BIVM-ERCC5R4GMW8 1640 aa11.13□□□□□ -0.63
CLK1-212ENST00000482590 SYNJ2O15056 1496 aa11.12□□□□□ -0.63
CLK1-212ENST00000482590 ADAMTS2O95450 1211 aa11.12□□□□□ -0.63
CLK1-212ENST00000482590 IL27Q8NEV9 243 aa11.12□□□□□ -0.63
CLK1-212ENST00000482590 TRIM52Q96A61 297 aa11.12□□□□□ -0.63
CLK1-212ENST00000482590 CYB5RLQ6IPT4 315 aa11.11□□□□□ -0.63
CLK1-212ENST00000482590 ABCA10Q8WWZ4 1543 aa11.1□□□□□ -0.63
CLK1-212ENST00000482590 A0A1W2PRU2 124 aa11.1□□□□□ -0.63
CLK1-212ENST00000482590 MEN1O00255 615 aa11.1□□□□□ -0.63
CLK1-212ENST00000482590 ERVK-9P63128 1117 aa11.1□□□□□ -0.63
CLK1-212ENST00000482590 SRSF11Q05519 484 aaKnown RBP11.1□□□□□ -0.63
CLK1-212ENST00000482590 LYPD4Q6UWN0 246 aa11.1□□□□□ -0.63
CLK1-212ENST00000482590 GAPVD1Q14C86 1478 aa11.1□□□□□ -0.63
CLK1-212ENST00000482590 LOC100996750A0A140TA64 210 aa11.09□□□□□ -0.63
CLK1-212ENST00000482590 GPC1P35052 558 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms