RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 LRRC40Q9H9A6 602 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 CACNG4Q9UBN1 327 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 CDH22Q9UJ99 828 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 C15orf38-AP3S2A0A0A6YYH1 394 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 ARHGEF37A1IGU5 675 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.13□□□□□ -0.47
HMGB1-206ENST00000405805 TRDMT1O14717 391 aaKnown RBP12.13□□□□□ -0.47
HMGB1-206ENST00000405805 HMBSP08397 361 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 HOXD12P35452 270 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 SFT2D3Q587I9 215 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 FBXO48Q5FWF7 155 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 CCSAPQ6IQ19 270 aaPredicted RBP12.13□□□□□ -0.47
HMGB1-206ENST00000405805 B3GNT9Q6UX72 402 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 C16orf89Q6UX73 402 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 ARPINQ7Z6K5 226 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 MTMR14Q8NCE2 650 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 CERS2Q96G23 380 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 VPS39Q96JC1 886 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 TMEM79Q9BSE2 394 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 FRMD8P1Q9BZ68 369 aaPredicted RBP12.13□□□□□ -0.47
HMGB1-206ENST00000405805 DPEP3Q9H4B8 488 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 EFCAB1Q9HAE3 211 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 SCHIP1Q9P0W5 487 aaPredicted RBP12.13□□□□□ -0.47
HMGB1-206ENST00000405805 MID2Q9UJV3 735 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 MKL2Q9ULH7 1088 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 POMPQ9Y244 141 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 TEX264Q9Y6I9 313 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 SLX4Q8IY92 1834 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 CFAP99D6REC4 459 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 MAFO75444 373 aaPredicted RBP12.13□□□□□ -0.47
HMGB1-206ENST00000405805 FARP2O94887 1054 aaPredicted RBP12.13□□□□□ -0.47
HMGB1-206ENST00000405805 FAM58BPP0C7Q3 252 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 ARF4P18085 180 aaPredicted RBP12.13□□□□□ -0.47
HMGB1-206ENST00000405805 SPIDRQ14159 915 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 NEDD8Q15843 81 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 TRIM60Q495X7 471 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 TNFAIP8L3Q5GJ75 292 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 DRICH1Q6PGQ1 229 aaPredicted RBP12.13□□□□□ -0.47
HMGB1-206ENST00000405805 CTU1Q7Z7A3 348 aaKnown RBP12.13□□□□□ -0.47
HMGB1-206ENST00000405805 KCNMB4Q86W47 210 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 OXCT2Q9BYC2 517 aaPredicted RBP12.13□□□□□ -0.47
HMGB1-206ENST00000405805 KANSL3Q9P2N6 904 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 CPSF3Q9UKF6 684 aaKnown RBP12.13□□□□□ -0.47
HMGB1-206ENST00000405805 SNX10Q9Y5X0 201 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 TRMUO75648 421 aaKnown RBP12.13□□□□□ -0.47
HMGB1-206ENST00000405805 C2P06681 752 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 INPP1P49441 399 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 CHN2P52757 468 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 CSE1LP55060 971 aaKnown RBP12.13□□□□□ -0.47
HMGB1-206ENST00000405805 ACTR3P61158 418 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 CCNA1P78396 465 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 SH3D19Q5HYK7 790 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 KYAT3Q6YP21 454 aaKnown RBP12.13□□□□□ -0.47
HMGB1-206ENST00000405805 FRMD7Q6ZUT3 714 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 ARFGAP1Q8N6T3 406 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 REPS2Q8NFH8 660 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 MCRS1Q96EZ8 462 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 FRMD8Q9BZ67 464 aaPredicted RBP12.13□□□□□ -0.47
HMGB1-206ENST00000405805 VPS33BQ9H267 617 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 CHRAC1Q9NRG0 131 aa12.13□□□□□ -0.47
HMGB1-206ENST00000405805 FARP1Q9Y4F1 1045 aaPredicted RBP12.13□□□□□ -0.47
HMGB1-206ENST00000405805 MSCO60682 206 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 RNASEH1O60930 286 aaKnown RBP12.12□□□□□ -0.47
HMGB1-206ENST00000405805 HOXC6P09630 235 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 KLF10Q13118 480 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 PITRM1Q5JRX3 1037 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 BNIPLQ7Z465 357 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 RNF139Q8WU17 664 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 CNDP1Q96KN2 507 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 TMEM134Q9H6X4 195 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.12□□□□□ -0.47
HMGB1-206ENST00000405805 NUMBLQ9Y6R0 609 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 NCF1BA6NI72 391 aaPredicted RBP12.12□□□□□ -0.47
HMGB1-206ENST00000405805 NCF1CA8MVU1 366 aaPredicted RBP12.12□□□□□ -0.47
HMGB1-206ENST00000405805 GNGT2O14610 69 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 PPEF2O14830 753 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 ASNA1O43681 348 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 PLIN3O60664 434 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 ENO2P09104 434 aaPredicted RBP12.12□□□□□ -0.47
HMGB1-206ENST00000405805 NCF1P14598 390 aaPredicted RBP12.12□□□□□ -0.47
HMGB1-206ENST00000405805 TKTP29401 623 aaKnown RBP12.12□□□□□ -0.47
HMGB1-206ENST00000405805 HALP42357 657 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 GPD2P43304 727 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 GRIA4P48058 902 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 CDK7P50613 346 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 IRF9Q00978 393 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 KRT72Q14CN4 511 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 FAM83EQ2M2I3 478 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 CROCCP3Q8IVE0 287 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 SLC41A1Q8IVJ1 513 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 PNPLA1Q8N8W4 532 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 CMASQ8NFW8 434 aaPredicted RBP12.12□□□□□ -0.47
HMGB1-206ENST00000405805 CSPG4P5Q96PW8 444 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 DEPDC7Q96QD5 511 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 WDR41Q9HAD4 459 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 POPDC2Q9HBU9 364 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 PCDHA11Q9Y5I1 949 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 SNX5Q9Y5X3 404 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 AP4B1Q9Y6B7 739 aa12.12□□□□□ -0.47
HMGB1-206ENST00000405805 LAMB2P55268 1798 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms