RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeast

Gene CUP9, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUP9	YPL177C	PUB1	P32588	453 aa	Known RBP RIP-Chip data	6.37	□□□□□ -1.39	RIP-Chip
CUP9	YPL177C	CHS2	P14180	963 aa		6.36	□□□□□ -1.39
CUP9	YPL177C	LIP5	P32875	414 aa		6.36	□□□□□ -1.39
CUP9	YPL177C	HXT8	P40886	569 aa		6.36	□□□□□ -1.39
CUP9	YPL177C	AVT1	P47082	602 aa		6.36	□□□□□ -1.39
CUP9	YPL177C	GUP1	P53154	560 aa		6.36	□□□□□ -1.39
CUP9	YPL177C	YGR130C	P53278	816 aa		6.36	□□□□□ -1.39
CUP9	YPL177C	CWC15	Q03772	175 aa	Known RBP	6.36	□□□□□ -1.39
CUP9	YPL177C	RGD2	P43556	714 aa		6.35	□□□□□ -1.39
CUP9	YPL177C	YML083C	Q04526	418 aa		6.35	□□□□□ -1.39
CUP9	YPL177C	BRE4	Q07660	1125 aa		6.35	□□□□□ -1.39
CUP9	YPL177C	NOB1	Q08444	459 aa	Known RBP	6.35	□□□□□ -1.39
CUP9	YPL177C	FUS1	P11710	512 aa		6.34	□□□□□ -1.39
CUP9	YPL177C	POL5	P39985	1022 aa	Known RBP	6.34	□□□□□ -1.39
CUP9	YPL177C	APC11	Q12157	165 aa		6.34	□□□□□ -1.39
CUP9	YPL177C	BOI1	P38041	980 aa	Known RBP	6.33	□□□□□ -1.4
CUP9	YPL177C	AIM46	P38885	310 aa		6.33	□□□□□ -1.4
CUP9	YPL177C	LEM3	P42838	414 aa		6.33	□□□□□ -1.4
CUP9	YPL177C	MAG2	Q06436	670 aa	Known RBP	6.33	□□□□□ -1.4
CUP9	YPL177C	FIR1	P40020	876 aa		6.32	□□□□□ -1.4
CUP9	YPL177C	SPO74	P45819	413 aa		6.32	□□□□□ -1.4
CUP9	YPL177C	YBR287W	P38355	427 aa		6.31	□□□□□ -1.4
CUP9	YPL177C	NCE103	P53615	221 aa		6.31	□□□□□ -1.4
CUP9	YPL177C	AOS1	Q06624	347 aa		6.31	□□□□□ -1.4
CUP9	YPL177C	CYC7	P00045	113 aa		6.3	□□□□□ -1.4
CUP9	YPL177C	ELM1	P32801	640 aa		6.3	□□□□□ -1.4
CUP9	YPL177C	NTA1	P40354	457 aa		6.3	□□□□□ -1.4
CUP9	YPL177C	HVG1	P0CE11	249 aa		6.29	□□□□□ -1.4
CUP9	YPL177C	RPB10	P22139	70 aa		6.29	□□□□□ -1.4
CUP9	YPL177C	MAE1	P36013	669 aa	Known RBP	6.29	□□□□□ -1.4
CUP9	YPL177C	SUT1	P53032	299 aa	Known RBP	6.29	□□□□□ -1.4
CUP9	YPL177C	PNP1	Q05788	311 aa		6.29	□□□□□ -1.4
CUP9	YPL177C	ELG1	Q12050	791 aa		6.29	□□□□□ -1.4
CUP9	YPL177C	SSA1	P10591	642 aa	Known RBP	6.28	□□□□□ -1.4
CUP9	YPL177C	SPO71	Q03868	1245 aa		6.28	□□□□□ -1.4
CUP9	YPL177C	TIF6	Q12522	245 aa	Known RBP	6.28	□□□□□ -1.4
CUP9	YPL177C	ERS1	P17261	260 aa		6.27	□□□□□ -1.41
CUP9	YPL177C	SEA4	P38164	1038 aa		6.27	□□□□□ -1.41
CUP9	YPL177C	MSB1	P21339	1137 aa	Known RBP	6.26	□□□□□ -1.41
CUP9	YPL177C	YJR124C	P47159	448 aa		6.26	□□□□□ -1.41
CUP9	YPL177C	YNR065C	P53751	1116 aa		6.26	□□□□□ -1.41
CUP9	YPL177C	GLO4	Q12320	285 aa		6.26	□□□□□ -1.41
CUP9	YPL177C	LSO1	Q3E827	93 aa		6.26	□□□□□ -1.41
CUP9	YPL177C	RRN6	P32786	894 aa		6.25	□□□□□ -1.41
CUP9	YPL177C	RAD55	P38953	406 aa		6.25	□□□□□ -1.41
CUP9	YPL177C	NEO1	P40527	1151 aa		6.25	□□□□□ -1.41
CUP9	YPL177C	HAS1	Q03532	505 aa	Known RBP	6.25	□□□□□ -1.41
CUP9	YPL177C	GEF1	P37020	779 aa		6.24	□□□□□ -1.41
CUP9	YPL177C	PSY2	P40164	858 aa		6.24	□□□□□ -1.41
CUP9	YPL177C	IRS4	P36115	615 aa	Known RBP	6.23	□□□□□ -1.41
CUP9	YPL177C	KIP3	P53086	805 aa	Known RBP	6.23	□□□□□ -1.41
CUP9	YPL177C	PYC2	P32327	1180 aa	Known RBP	6.22	□□□□□ -1.41
CUP9	YPL177C	SMC1	P32908	1225 aa		6.22	□□□□□ -1.41
CUP9	YPL177C	RPL34A	P87262	121 aa	Predicted RBP	6.22	□□□□□ -1.41
CUP9	YPL177C	SDH1	Q00711	640 aa		6.21	□□□□□ -1.42
CUP9	YPL177C	BOL3	P39724	118 aa		6.2	□□□□□ -1.42
CUP9	YPL177C	GIC2	Q06648	383 aa		6.2	□□□□□ -1.42
CUP9	YPL177C	GCD1	P09032	578 aa	Predicted RBP	6.19	□□□□□ -1.42
CUP9	YPL177C	FET4	P40988	552 aa		6.19	□□□□□ -1.42
CUP9	YPL177C	FAR11	P53917	953 aa		6.17	□□□□□ -1.42
CUP9	YPL177C	RNQ1	P25367	405 aa		6.16	□□□□□ -1.42
CUP9	YPL177C	LRG1	P35688	1017 aa		6.16	□□□□□ -1.42
CUP9	YPL177C	CTR9	P89105	1077 aa		6.16	□□□□□ -1.42
CUP9	YPL177C	YOR223W	Q12015	292 aa		6.16	□□□□□ -1.42
CUP9	YPL177C	FUR4	P05316	633 aa	Known RBP	6.15	□□□□□ -1.42
CUP9	YPL177C	SEG2	P34250	1132 aa		6.15	□□□□□ -1.42
CUP9	YPL177C	COB	P00163	385 aa		6.14	□□□□□ -1.43
CUP9	YPL177C	CDC3	P32457	520 aa	Known RBP	6.13	□□□□□ -1.43
CUP9	YPL177C	WHI3	P34761	661 aa	Known RBP	6.13	□□□□□ -1.43
CUP9	YPL177C	GPT2	P36148	743 aa		6.13	□□□□□ -1.43
CUP9	YPL177C	UBP5	P39944	805 aa		6.13	□□□□□ -1.43
CUP9	YPL177C	MMM1	P41800	426 aa		6.13	□□□□□ -1.43
CUP9	YPL177C	POL12	P38121	705 aa	Predicted RBP	6.12	□□□□□ -1.43
CUP9	YPL177C	YMR074C	Q04773	145 aa		6.12	□□□□□ -1.43
CUP9	YPL177C	RIM11	P38615	370 aa		6.11	□□□□□ -1.43
CUP9	YPL177C	CIT3	P43635	486 aa		6.11	□□□□□ -1.43
CUP9	YPL177C	DFG16	Q99234	619 aa		6.11	□□□□□ -1.43
CUP9	YPL177C	NIT1	P40447	199 aa		6.1	□□□□□ -1.43
CUP9	YPL177C	GCV1	P48015	400 aa		6.1	□□□□□ -1.43
CUP9	YPL177C	ECL1	P48235	211 aa		6.1	□□□□□ -1.43
CUP9	YPL177C	DOT1	Q04089	582 aa	Known RBP	6.1	□□□□□ -1.43
CUP9	YPL177C	YIG1	Q08956	461 aa		6.1	□□□□□ -1.43
CUP9	YPL177C	CMR1	Q12510	522 aa	Known RBP	6.1	□□□□□ -1.43
CUP9	YPL177C	DUR3	P33413	735 aa		6.09	□□□□□ -1.43
CUP9	YPL177C	RSC4	Q02206	625 aa		6.09	□□□□□ -1.43
CUP9	YPL177C	HAT1	Q12341	374 aa		6.08	□□□□□ -1.44
CUP9	YPL177C	HTS1	P07263	546 aa	Known RBP	6.07	□□□□□ -1.44
CUP9	YPL177C	PRP5	P21372	849 aa	Predicted RBP	6.07	□□□□□ -1.44
CUP9	YPL177C	NPR1	P22211	790 aa		6.07	□□□□□ -1.44
CUP9	YPL177C	OYE3	P41816	400 aa	Predicted RBP	6.07	□□□□□ -1.44
CUP9	YPL177C	RCM1	P53972	490 aa		6.06	□□□□□ -1.44
CUP9	YPL177C	UFD2	P54860	961 aa		6.06	□□□□□ -1.44
CUP9	YPL177C	KAR5	Q04746	504 aa		6.06	□□□□□ -1.44
CUP9	YPL177C	YOR059C	Q08448	450 aa	Known RBP	6.06	□□□□□ -1.44
CUP9	YPL177C	YLL054C	Q12244	843 aa		6.06	□□□□□ -1.44
CUP9	YPL177C	YHL008C	P38750	627 aa		6.05	□□□□□ -1.44
CUP9	YPL177C	YML020W	Q03722	664 aa		6.05	□□□□□ -1.44
CUP9	YPL177C	MSH6	Q03834	1242 aa		6.05	□□□□□ -1.44
CUP9	YPL177C	NSI1	Q12457	570 aa		6.05	□□□□□ -1.44
CUP9	YPL177C	HSP78	P33416	811 aa		6.04	□□□□□ -1.44

Retrieved 100 of 5,963 RNA–protein pairs in 59.3 ms