RNA–Protein interactions for RNA: YOR005C

DNL4, Transcript of DNA ligase required for nonhomologous end-joining (NHEJ), yeastyeast

Gene DNL4, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DNL4YOR005C ISU1Q03020 165 aa3.27□□□□□ -1.89
DNL4YOR005C YML082WQ04533 649 aaKnown RBP3.27□□□□□ -1.89
DNL4YOR005C OPI10Q08202 246 aa3.27□□□□□ -1.89
DNL4YOR005C YOL057WQ08225 711 aa3.27□□□□□ -1.89
DNL4YOR005C MCD1Q12158 566 aa3.27□□□□□ -1.89
DNL4YOR005C IKI3Q06706 1349 aaKnown RBP3.27□□□□□ -1.89
DNL4YOR005C PHO8P11491 566 aa3.26□□□□□ -1.89
DNL4YOR005C TIM23P32897 222 aa3.26□□□□□ -1.89
DNL4YOR005C ENP1P38333 483 aaKnown RBP3.26□□□□□ -1.89
DNL4YOR005C PMC1P38929 1173 aaPredicted RBP3.26□□□□□ -1.89
DNL4YOR005C CHZ1P40019 153 aaPredicted RBP3.26□□□□□ -1.89
DNL4YOR005C MSH4P40965 878 aaPredicted RBP3.26□□□□□ -1.89
DNL4YOR005C EMW1P42842 904 aaKnown RBP3.26□□□□□ -1.89
DNL4YOR005C MRPS18P42847 217 aa3.26□□□□□ -1.89
DNL4YOR005C BSC2Q05611 235 aa3.26□□□□□ -1.89
DNL4YOR005C TDA5Q06417 326 aaKnown RBP3.26□□□□□ -1.89
DNL4YOR005C POL1P13382 1468 aa3.26□□□□□ -1.89
DNL4YOR005C MCM1P11746 286 aa3.26□□□□□ -1.89
DNL4YOR005C PAT1P25644 796 aaKnown RBP3.26□□□□□ -1.89
DNL4YOR005C YHL008CP38750 627 aa3.26□□□□□ -1.89
DNL4YOR005C HXT8P40886 569 aa3.26□□□□□ -1.89
DNL4YOR005C YPQ2Q06328 317 aa3.26□□□□□ -1.89
DNL4YOR005C SDH2P21801 266 aa3.25□□□□□ -1.89
DNL4YOR005C VMA3P25515 160 aa3.25□□□□□ -1.89
DNL4YOR005C TIM54P47045 478 aa3.25□□□□□ -1.89
DNL4YOR005C DAL4Q04895 635 aa3.25□□□□□ -1.89
DNL4YOR005C PRI2P20457 528 aa3.25□□□□□ -1.89
DNL4YOR005C SCD5P34758 872 aa3.25□□□□□ -1.89
DNL4YOR005C NAB3P38996 802 aaKnown RBP RIP-Chip data3.25□□□□□ -1.89not detected
DNL4YOR005C TYW3P53177 273 aa3.25□□□□□ -1.89
DNL4YOR005C BNI4P53858 892 aa3.25□□□□□ -1.89
DNL4YOR005C YLR125WQ12138 136 aa3.25□□□□□ -1.89
DNL4YOR005C PRP40P33203 583 aaKnown RBP3.25□□□□□ -1.89
DNL4YOR005C YKL069WP36088 180 aa3.25□□□□□ -1.89
DNL4YOR005C YEN1P40028 759 aa3.25□□□□□ -1.89
DNL4YOR005C DNM1P54861 757 aa3.25□□□□□ -1.89
DNL4YOR005C YPL109CQ02981 657 aa3.25□□□□□ -1.89
DNL4YOR005C YCS4Q06156 1176 aa3.25□□□□□ -1.89
DNL4YOR005C URN1Q06525 465 aaKnown RBP3.25□□□□□ -1.89
DNL4YOR005C INP54Q08227 384 aaKnown RBP3.25□□□□□ -1.89
DNL4YOR005C TRM732Q03496 1420 aa3.24□□□□□ -1.89
DNL4YOR005C SSD1P24276 1250 aaKnown RBP RIP-Chip data3.24□□□□□ -1.89not detected
DNL4YOR005C FBP26P32604 452 aa3.24□□□□□ -1.89
DNL4YOR005C RSP5P39940 809 aaKnown RBP3.24□□□□□ -1.89
DNL4YOR005C NTA1P40354 457 aa3.24□□□□□ -1.89
DNL4YOR005C FLC1Q08967 793 aa3.24□□□□□ -1.89
DNL4YOR005C ESP1Q03018 1630 aa3.24□□□□□ -1.89
DNL4YOR005C DAT1P13483 248 aaKnown RBP3.24□□□□□ -1.89
DNL4YOR005C TBS1P38114 1094 aa3.24□□□□□ -1.89
DNL4YOR005C RGD2P43556 714 aa3.24□□□□□ -1.89
DNL4YOR005C APP1P53933 587 aa3.24□□□□□ -1.89
DNL4YOR005C WTM2Q12206 467 aa3.24□□□□□ -1.89
DNL4YOR005C NOP14Q99207 810 aaKnown RBP3.24□□□□□ -1.89
DNL4YOR005C CCP1P00431 361 aa3.23□□□□□ -1.89
DNL4YOR005C FLP1P03870 423 aa3.23□□□□□ -1.89
DNL4YOR005C STE6P12866 1290 aa3.23□□□□□ -1.89
DNL4YOR005C SRM1P21827 482 aa3.23□□□□□ -1.89
DNL4YOR005C PAF1P38351 445 aa3.23□□□□□ -1.89
DNL4YOR005C CRP1P38845 465 aaKnown RBP3.23□□□□□ -1.89
DNL4YOR005C RAD55P38953 406 aa3.23□□□□□ -1.89
DNL4YOR005C RKR1Q04781 1562 aa3.23□□□□□ -1.89
DNL4YOR005C MCM5P29496 775 aaKnown RBP3.23□□□□□ -1.89
DNL4YOR005C THI4P32318 326 aa3.23□□□□□ -1.89
DNL4YOR005C SPT16P32558 1035 aaKnown RBP3.23□□□□□ -1.89
DNL4YOR005C LDH1P38139 375 aa3.23□□□□□ -1.89
DNL4YOR005C PIC2P40035 300 aa3.23□□□□□ -1.89
DNL4YOR005C RTT10Q08924 1013 aa3.23□□□□□ -1.89
DNL4YOR005C MYO4P32492 1471 aa3.23□□□□□ -1.89
DNL4YOR005C GCR1P07261 785 aa3.22□□□□□ -1.89
DNL4YOR005C KAR2P16474 682 aaKnown RBP3.22□□□□□ -1.89
DNL4YOR005C KIP2P28743 706 aa3.22□□□□□ -1.89
DNL4YOR005C IRS4P36115 615 aaKnown RBP3.22□□□□□ -1.89
DNL4YOR005C NUP170P38181 1502 aa3.22□□□□□ -1.89
DNL4YOR005C PSY2P40164 858 aa3.22□□□□□ -1.89
DNL4YOR005C YJR115WP47152 169 aa3.22□□□□□ -1.89
DNL4YOR005C EEB1Q02891 456 aa3.22□□□□□ -1.89
DNL4YOR005C ADI1Q03677 179 aa3.22□□□□□ -1.89
DNL4YOR005C UTP4Q06679 776 aaKnown RBP3.22□□□□□ -1.89
DNL4YOR005C TIF6Q12522 245 aaKnown RBP3.22□□□□□ -1.89
DNL4YOR005C ECM5Q03214 1411 aa3.22□□□□□ -1.89
DNL4YOR005C ERR1P0CX10 437 aa3.22□□□□□ -1.89
DNL4YOR005C ERR2P0CX11 437 aa3.22□□□□□ -1.89
DNL4YOR005C MSN1P22148 382 aa3.22□□□□□ -1.89
DNL4YOR005C MRC1P25588 1096 aa3.22□□□□□ -1.89
DNL4YOR005C UGA4P32837 571 aa3.22□□□□□ -1.89
DNL4YOR005C STE5P32917 917 aa3.22□□□□□ -1.89
DNL4YOR005C ZDS1P50111 915 aaKnown RBP3.22□□□□□ -1.89
DNL4YOR005C YNR029CP53729 429 aaKnown RBP3.22□□□□□ -1.89
DNL4YOR005C FAL1Q12099 399 aaKnown RBP3.22□□□□□ -1.89
DNL4YOR005C GIN4Q12263 1142 aa3.22□□□□□ -1.89
DNL4YOR005C MKS1P34072 584 aa3.21□□□□□ -1.9
DNL4YOR005C GRX7P38068 203 aa3.21□□□□□ -1.9
DNL4YOR005C GGA2P38817 585 aaKnown RBP3.21□□□□□ -1.9
DNL4YOR005C ULP1Q02724 621 aa3.21□□□□□ -1.9
DNL4YOR005C RGA2Q06407 1009 aa3.21□□□□□ -1.9
DNL4YOR005C GYP1Q08484 637 aa3.21□□□□□ -1.9
DNL4YOR005C SMC4Q12267 1418 aa3.21□□□□□ -1.9
DNL4YOR005C RPL8BP29453 256 aaKnown RBP3.21□□□□□ -1.9
DNL4YOR005C SEC6P32844 805 aa3.21□□□□□ -1.9
DNL4YOR005C YBR184WP38299 523 aa3.21□□□□□ -1.9
Retrieved 100 of 5,963 RNA–protein pairs in 32 ms