RNA–Protein interactions for RNA: YLR399C

BDF1, Transcript of Protein involved in transcription initiation, yeast

Gene BDF1, Length 2,061 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
BDF1	YLR399C	DAL7	P21826	554 aa		13.75	□□□□□ -0.21
BDF1	YLR399C	UBP12	P39538	1254 aa		13.75	□□□□□ -0.21
BDF1	YLR399C	RIO2	P40160	425 aa	Known RBP	13.75	□□□□□ -0.21
BDF1	YLR399C	ALF1	P53904	254 aa		13.75	□□□□□ -0.21
BDF1	YLR399C	DNM1	P54861	757 aa		13.75	□□□□□ -0.21
BDF1	YLR399C	YIL177C	P40434	1758 aa		13.74	□□□□□ -0.21
BDF1	YLR399C	YJL225C	P40889	1758 aa		13.74	□□□□□ -0.21
BDF1	YLR399C	SSF1	P38789	453 aa	Predicted RBP	13.74	□□□□□ -0.21
BDF1	YLR399C	YMR1	P47147	688 aa	Known RBP RIP-Chip data	13.74	□□□□□ -0.21	not detected
BDF1	YLR399C	YLR407W	Q06070	228 aa		13.74	□□□□□ -0.21
BDF1	YLR399C	TOP1	P04786	769 aa		13.73	□□□□□ -0.21
BDF1	YLR399C	RAD3	P06839	778 aa		13.73	□□□□□ -0.21
BDF1	YLR399C	RGP1	P16664	663 aa		13.73	□□□□□ -0.21
BDF1	YLR399C	CDC60	P26637	1090 aa	Known RBP	13.73	□□□□□ -0.21
BDF1	YLR399C	MIC19	P43594	170 aa		13.73	□□□□□ -0.21
BDF1	YLR399C	BOP3	P53958	396 aa		13.73	□□□□□ -0.21
BDF1	YLR399C	CTF4	Q01454	927 aa		13.73	□□□□□ -0.21
BDF1	YLR399C	CBF5	P33322	483 aa	Known RBP RIP-Chip data	13.72	□□□□□ -0.21	not detected
BDF1	YLR399C	RAD1	P06777	1100 aa		13.71	□□□□□ -0.21
BDF1	YLR399C	LPD1	P09624	499 aa	Known RBP	13.71	□□□□□ -0.21
BDF1	YLR399C	HEL1	P36113	551 aa		13.71	□□□□□ -0.21
BDF1	YLR399C	CST6	P40535	587 aa		13.71	□□□□□ -0.21
BDF1	YLR399C	EPL1	P43572	832 aa		13.71	□□□□□ -0.21
BDF1	YLR399C	YJR079W	P47126	109 aa		13.71	□□□□□ -0.21
BDF1	YLR399C	NNF2	P53253	936 aa		13.71	□□□□□ -0.21
BDF1	YLR399C	ESF1	Q06344	628 aa	Known RBP	13.71	□□□□□ -0.21
BDF1	YLR399C	OSH2	Q12451	1283 aa		13.71	□□□□□ -0.21
BDF1	YLR399C	URB1	P34241	1764 aa	Known RBP	13.7	□□□□□ -0.22
BDF1	YLR399C	HSP82	P02829	709 aa	Known RBP	13.7	□□□□□ -0.22
BDF1	YLR399C	PGI1	P12709	554 aa	Known RBP	13.7	□□□□□ -0.22
BDF1	YLR399C	PRP16	P15938	1071 aa	Predicted RBP	13.7	□□□□□ -0.22
BDF1	YLR399C	PXL1	P36166	706 aa		13.7	□□□□□ -0.22
BDF1	YLR399C	CCC2	P38995	1004 aa		13.7	□□□□□ -0.22
BDF1	YLR399C	HCR1	Q05775	265 aa	Known RBP	13.7	□□□□□ -0.22
BDF1	YLR399C	SEC65	P29478	273 aa		13.7	□□□□□ -0.22
BDF1	YLR399C	HXK1	P04806	485 aa	Known RBP	13.69	□□□□□ -0.22
BDF1	YLR399C	PRE10	P21242	288 aa	Known RBP RIP-Chip data	13.69	□□□□□ -0.22	not detected
BDF1	YLR399C	IMP2'	P32351	346 aa		13.69	□□□□□ -0.22
BDF1	YLR399C	HXT10	P43581	546 aa		13.69	□□□□□ -0.22
BDF1	YLR399C	TAN1	P53072	289 aa	Predicted RBP	13.69	□□□□□ -0.22
BDF1	YLR399C	AFT2	Q08957	416 aa		13.69	□□□□□ -0.22
BDF1	YLR399C	DIP2	Q12220	943 aa	Predicted RBP	13.69	□□□□□ -0.22
BDF1	YLR399C	SEC14	P24280	304 aa	Known RBP	13.68	□□□□□ -0.22
BDF1	YLR399C	PTC4	P38089	393 aa		13.68	□□□□□ -0.22
BDF1	YLR399C	MDM38	Q08179	573 aa		13.68	□□□□□ -0.22
BDF1	YLR399C	ZUO1	P32527	433 aa	Known RBP	13.68	□□□□□ -0.22
BDF1	YLR399C	SMF1	P38925	575 aa		13.68	□□□□□ -0.22
BDF1	YLR399C	RAD51	P25454	400 aa		13.67	□□□□□ -0.22
BDF1	YLR399C	PEP3	P27801	918 aa		13.67	□□□□□ -0.22
BDF1	YLR399C	MIF2	P35201	549 aa		13.67	□□□□□ -0.22
BDF1	YLR399C	ADE17	P38009	592 aa	Known RBP	13.67	□□□□□ -0.22
BDF1	YLR399C	BUD16	P39988	312 aa		13.67	□□□□□ -0.22
BDF1	YLR399C	VAC14	Q06708	880 aa		13.67	□□□□□ -0.22
BDF1	YLR399C	ALE1	Q08548	619 aa		13.67	□□□□□ -0.22
BDF1	YLR399C	ARD1	P07347	238 aa	Predicted RBP	13.67	□□□□□ -0.22
BDF1	YLR399C	SAC6	P32599	642 aa	Known RBP	13.67	□□□□□ -0.22
BDF1	YLR399C	YJR142W	P47173	342 aa		13.67	□□□□□ -0.22
BDF1	YLR399C	GFD1	Q04839	188 aa	Known RBP	13.66	□□□□□ -0.22
BDF1	YLR399C	STE23	Q06010	1027 aa		13.66	□□□□□ -0.22
BDF1	YLR399C	RAD53	P22216	821 aa		13.65	□□□□□ -0.22
BDF1	YLR399C	EPS1	P40557	701 aa		13.65	□□□□□ -0.22
BDF1	YLR399C	SHM1	P37292	490 aa	Predicted RBP	13.65	□□□□□ -0.22
BDF1	YLR399C	ISW1	P38144	1129 aa		13.65	□□□□□ -0.22
BDF1	YLR399C	TRS85	P46944	698 aa		13.65	□□□□□ -0.22
BDF1	YLR399C	VPS30	Q02948	557 aa		13.65	□□□□□ -0.22
BDF1	YLR399C	ECM23	Q02710	187 aa		13.64	□□□□□ -0.23
BDF1	YLR399C	SEC23	P15303	768 aa	Known RBP	13.63	□□□□□ -0.23
BDF1	YLR399C	SEC26	P41810	973 aa	Known RBP	13.63	□□□□□ -0.23
BDF1	YLR399C	TY4B-H	P0C2J7	1802 aa		13.63	□□□□□ -0.23
BDF1	YLR399C	TY4B-J	P47024	1803 aa		13.63	□□□□□ -0.23
BDF1	YLR399C	SSK22	P25390	1331 aa	Predicted RBP	13.63	□□□□□ -0.23
BDF1	YLR399C	JIP3	O13555	125 aa		13.63	□□□□□ -0.23
BDF1	YLR399C	ATG3	P40344	310 aa		13.63	□□□□□ -0.23
BDF1	YLR399C	VTC3	Q02725	835 aa		13.63	□□□□□ -0.23
BDF1	YLR399C	SMC6	Q12749	1114 aa		13.63	□□□□□ -0.23
BDF1	YLR399C	RPS6A	P0CX37	236 aa	Known RBP	13.62	□□□□□ -0.23
BDF1	YLR399C	RPS6B	P0CX38	236 aa	Predicted RBP	13.62	□□□□□ -0.23
BDF1	YLR399C	PMR1	P13586	950 aa		13.62	□□□□□ -0.23
BDF1	YLR399C	NFU1	P32860	256 aa		13.62	□□□□□ -0.23
BDF1	YLR399C	MCX1	P38323	520 aa	Predicted RBP	13.62	□□□□□ -0.23
BDF1	YLR399C	ALD2	P47771	506 aa		13.62	□□□□□ -0.23
BDF1	YLR399C	YSW1	P38280	609 aa		13.62	□□□□□ -0.23
BDF1	YLR399C	VPS8	P39702	1274 aa		13.62	□□□□□ -0.23
BDF1	YLR399C	DIT2	P21595	489 aa		13.61	□□□□□ -0.23
BDF1	YLR399C	ERG5	P54781	538 aa		13.61	□□□□□ -0.23
BDF1	YLR399C	ITT1	Q04638	464 aa		13.61	□□□□□ -0.23
BDF1	YLR399C	CMS1	Q07897	291 aa	Known RBP	13.61	□□□□□ -0.23
BDF1	YLR399C	YME2	P32843	850 aa		13.6	□□□□□ -0.23
BDF1	YLR399C	VPS64	Q03944	604 aa		13.6	□□□□□ -0.23
BDF1	YLR399C	LCB5	Q06147	687 aa	Known RBP	13.6	□□□□□ -0.23
BDF1	YLR399C	AI2	P03876	854 aa		13.6	□□□□□ -0.23
BDF1	YLR399C	KRS1	P15180	591 aa	Known RBP	13.6	□□□□□ -0.23
BDF1	YLR399C	HCA4	P20448	770 aa	Known RBP	13.6	□□□□□ -0.23
BDF1	YLR399C	PAP1	P29468	568 aa	Known RBP	13.6	□□□□□ -0.23
BDF1	YLR399C	PDB1	P32473	366 aa	Known RBP	13.6	□□□□□ -0.23
BDF1	YLR399C	YET1	P35723	206 aa		13.6	□□□□□ -0.23
BDF1	YLR399C	EFM4	P40516	257 aa		13.6	□□□□□ -0.23
BDF1	YLR399C	YJR008W	P47085	338 aa		13.6	□□□□□ -0.23
BDF1	YLR399C	SPO19	Q03029	223 aa		13.6	□□□□□ -0.23
BDF1	YLR399C	NUR1	Q12066	484 aa		13.6	□□□□□ -0.23

Retrieved 100 of 5,963 RNA–protein pairs in 53.2 ms