RNA–Protein interactions for RNA: YHR060W

VMA22, Transcript of Protein that is required for vacuolar H+-ATPase (V-ATPase) function, yeast

Gene VMA22, Length 546 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA22	YHR060W	SSB1	P11484	613 aa	Known RBP	5.66	□□□□□ -1.5
VMA22	YHR060W	MRPL33	P20084	86 aa		5.66	□□□□□ -1.5
VMA22	YHR060W	ISC10	P32645	267 aa		5.66	□□□□□ -1.5
VMA22	YHR060W	RPS26A	P39938	119 aa	Known RBP	5.66	□□□□□ -1.5
VMA22	YHR060W	RPS26B	P39939	119 aa	Known RBP	5.66	□□□□□ -1.5
VMA22	YHR060W	SSB2	P40150	613 aa	Known RBP	5.66	□□□□□ -1.5
VMA22	YHR060W	ATG36	P46983	293 aa		5.66	□□□□□ -1.5
VMA22	YHR060W	CDC55	Q00362	526 aa		5.66	□□□□□ -1.5
VMA22	YHR060W	YGR161W-C	Q3E744	92 aa		5.66	□□□□□ -1.5
VMA22	YHR060W	DIT1	P21623	536 aa		5.65	□□□□□ -1.5
VMA22	YHR060W	KAP122	P32767	1081 aa		5.65	□□□□□ -1.5
VMA22	YHR060W	DYS1	P38791	387 aa		5.65	□□□□□ -1.5
VMA22	YHR060W	YRB30	P53107	440 aa	Predicted RBP	5.65	□□□□□ -1.5
VMA22	YHR060W	YNL011C	P53980	444 aa		5.65	□□□□□ -1.5
VMA22	YHR060W	YMR265C	Q03508	461 aa	Known RBP	5.65	□□□□□ -1.5
VMA22	YHR060W	GPI13	Q07830	1017 aa		5.65	□□□□□ -1.5
VMA22	YHR060W	YDL176W	Q12027	708 aa		5.65	□□□□□ -1.5
VMA22	YHR060W	APC11	Q12157	165 aa		5.65	□□□□□ -1.5
VMA22	YHR060W	MET6	P05694	767 aa	Known RBP	5.64	□□□□□ -1.51
VMA22	YHR060W	BOI1	P38041	980 aa	Known RBP	5.64	□□□□□ -1.51
VMA22	YHR060W	LYS5	P50113	272 aa		5.64	□□□□□ -1.51
VMA22	YHR060W	MTO1	P53070	669 aa		5.64	□□□□□ -1.51
VMA22	YHR060W	CYC8	P14922	966 aa		5.63	□□□□□ -1.51
VMA22	YHR060W	RGP1	P16664	663 aa		5.63	□□□□□ -1.51
VMA22	YHR060W	VMA3	P25515	160 aa		5.63	□□□□□ -1.51
VMA22	YHR060W	SMC1	P32908	1225 aa		5.63	□□□□□ -1.51
VMA22	YHR060W	MRPL16	P38064	232 aa		5.63	□□□□□ -1.51
VMA22	YHR060W	LDH1	P38139	375 aa		5.63	□□□□□ -1.51
VMA22	YHR060W	PBP2	P38151	413 aa	Known RBP RIP-Chip data	5.63	□□□□□ -1.51	not detected
VMA22	YHR060W	YBR287W	P38355	427 aa		5.63	□□□□□ -1.51
VMA22	YHR060W	CEM1	P39525	442 aa		5.63	□□□□□ -1.51
VMA22	YHR060W	BUD6	P41697	788 aa		5.63	□□□□□ -1.51
VMA22	YHR060W	CUZ1	P53899	274 aa		5.63	□□□□□ -1.51
VMA22	YHR060W	BDF2	Q07442	638 aa		5.63	□□□□□ -1.51
VMA22	YHR060W	NOC3	Q07896	663 aa	Predicted RBP	5.63	□□□□□ -1.51
VMA22	YHR060W	CCP1	P00431	361 aa		5.62	□□□□□ -1.51
VMA22	YHR060W	NAB3	P38996	802 aa	Known RBP RIP-Chip data	5.62	□□□□□ -1.51	not detected
VMA22	YHR060W	QDR2	P40474	542 aa		5.62	□□□□□ -1.51
VMA22	YHR060W	YDR461C-A	Q2V2P7	80 aa		5.62	□□□□□ -1.51
VMA22	YHR060W	MNN1	P39106	762 aa		5.61	□□□□□ -1.51
VMA22	YHR060W	MSH4	P40965	878 aa	Predicted RBP	5.61	□□□□□ -1.51
VMA22	YHR060W	MRPS18	P42847	217 aa		5.61	□□□□□ -1.51
VMA22	YHR060W	SKP1	P52286	194 aa		5.61	□□□□□ -1.51
VMA22	YHR060W	KRE33	P53914	1056 aa	Known RBP	5.61	□□□□□ -1.51
VMA22	YHR060W	YPL062W	Q02781	134 aa		5.61	□□□□□ -1.51
VMA22	YHR060W	MCD1	Q12158	566 aa		5.61	□□□□□ -1.51
VMA22	YHR060W	DPH6	Q12429	685 aa		5.61	□□□□□ -1.51
VMA22	YHR060W	RAD2	P07276	1031 aa		5.6	□□□□□ -1.51
VMA22	YHR060W	RPC31	P17890	251 aa		5.6	□□□□□ -1.51
VMA22	YHR060W	RPB10	P22139	70 aa		5.6	□□□□□ -1.51
VMA22	YHR060W	FPS1	P23900	669 aa		5.6	□□□□□ -1.51
VMA22	YHR060W	CHZ1	P40019	153 aa	Predicted RBP	5.6	□□□□□ -1.51
VMA22	YHR060W	KRI1	P42846	591 aa	Known RBP	5.6	□□□□□ -1.51
VMA22	YHR060W	SUT1	P53032	299 aa	Known RBP	5.6	□□□□□ -1.51
VMA22	YHR060W	NAN1	Q02931	896 aa	Known RBP	5.6	□□□□□ -1.51
VMA22	YHR060W	SWE1	P32944	819 aa		5.59	□□□□□ -1.51
VMA22	YHR060W	FIR1	P40020	876 aa		5.59	□□□□□ -1.51
VMA22	YHR060W	YGR035C	P53222	116 aa		5.59	□□□□□ -1.51
VMA22	YHR060W	ADE12	P80210	433 aa	Known RBP	5.59	□□□□□ -1.51
VMA22	YHR060W	CUS1	Q02554	436 aa	Predicted RBP	5.59	□□□□□ -1.51
VMA22	YHR060W	HEH2	Q03281	663 aa		5.59	□□□□□ -1.51
VMA22	YHR060W	YLR125W	Q12138	136 aa		5.59	□□□□□ -1.51
VMA22	YHR060W	KAR2	P16474	682 aa	Known RBP	5.58	□□□□□ -1.52
VMA22	YHR060W	GRX1	P25373	110 aa	Known RBP	5.58	□□□□□ -1.52
VMA22	YHR060W	NCL1	P38205	684 aa	Known RBP	5.58	□□□□□ -1.52
VMA22	YHR060W	APM2	P38700	605 aa		5.58	□□□□□ -1.52
VMA22	YHR060W	YHL008C	P38750	627 aa		5.58	□□□□□ -1.52
VMA22	YHR060W	HXT8	P40886	569 aa		5.58	□□□□□ -1.52
VMA22	YHR060W	GDE1	Q02979	1223 aa		5.58	□□□□□ -1.52
VMA22	YHR060W	BSC2	Q05611	235 aa		5.58	□□□□□ -1.52
VMA22	YHR060W	SYT1	Q06836	1226 aa		5.58	□□□□□ -1.52
VMA22	YHR060W	YOR296W	Q08748	1289 aa		5.58	□□□□□ -1.52
VMA22	YHR060W	PRE9	P23638	258 aa	Known RBP	5.57	□□□□□ -1.52
VMA22	YHR060W	GRX4	P32642	244 aa		5.57	□□□□□ -1.52
VMA22	YHR060W	ISW1	P38144	1129 aa		5.57	□□□□□ -1.52
VMA22	YHR060W	GIP1	P38229	639 aa		5.57	□□□□□ -1.52
VMA22	YHR060W	NUP82	P40368	713 aa		5.57	□□□□□ -1.52
VMA22	YHR060W	HUL5	P53119	910 aa		5.57	□□□□□ -1.52
VMA22	YHR060W	RSC4	Q02206	625 aa		5.57	□□□□□ -1.52
VMA22	YHR060W	HPF1	Q05164	967 aa		5.57	□□□□□ -1.52
VMA22	YHR060W	TDA5	Q06417	326 aa	Known RBP	5.57	□□□□□ -1.52
VMA22	YHR060W	HXK1	P04806	485 aa	Known RBP	5.56	□□□□□ -1.52
VMA22	YHR060W	PHO8	P11491	566 aa		5.56	□□□□□ -1.52
VMA22	YHR060W	TPM2	P40414	161 aa		5.56	□□□□□ -1.52
VMA22	YHR060W	TIM54	P47045	478 aa		5.56	□□□□□ -1.52
VMA22	YHR060W	CDC34	P14682	295 aa		5.55	□□□□□ -1.52
VMA22	YHR060W	JJJ3	P47138	172 aa		5.55	□□□□□ -1.52
VMA22	YHR060W	RAD4	P14736	754 aa		5.54	□□□□□ -1.52
VMA22	YHR060W	MSN1	P22148	382 aa		5.54	□□□□□ -1.52
VMA22	YHR060W	YJR142W	P47173	342 aa		5.54	□□□□□ -1.52
VMA22	YHR060W	DAL4	Q04895	635 aa		5.54	□□□□□ -1.52
VMA22	YHR060W	YCS4	Q06156	1176 aa		5.54	□□□□□ -1.52
VMA22	YHR060W	SPO75	Q07798	868 aa		5.54	□□□□□ -1.52
VMA22	YHR060W	TRK2	P28584	889 aa		5.53	□□□□□ -1.52
VMA22	YHR060W	GRX7	P38068	203 aa		5.53	□□□□□ -1.52
VMA22	YHR060W	GGA2	P38817	585 aa	Known RBP	5.53	□□□□□ -1.52
VMA22	YHR060W	RAD55	P38953	406 aa		5.53	□□□□□ -1.52
VMA22	YHR060W	NTA1	P40354	457 aa		5.53	□□□□□ -1.52
VMA22	YHR060W	OPI10	Q08202	246 aa		5.53	□□□□□ -1.52
VMA22	YHR060W	TMA46	Q12000	345 aa	Known RBP	5.53	□□□□□ -1.52

Retrieved 100 of 5,963 RNA–protein pairs in 52.7 ms