RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C GLT1Q12680 2145 aaKnown RBP3.96□□□□□ -1.78
PCF11YDR228C RAD55P38953 406 aa3.96□□□□□ -1.78
PCF11YDR228C PSY2P40164 858 aa3.96□□□□□ -1.78
PCF11YDR228C YJL181WP46987 611 aa3.96□□□□□ -1.78
PCF11YDR228C DSE4P53753 1117 aa3.95□□□□□ -1.78
PCF11YDR228C NRD1P53617 575 aaKnown RBP RIP-Chip data3.94□□□□□ -1.78 RIP-Chip
PCF11YDR228C PAN5P38787 379 aa3.94□□□□□ -1.78
PCF11YDR228C POL5P39985 1022 aaKnown RBP3.94□□□□□ -1.78
PCF11YDR228C ATG1P53104 897 aa3.94□□□□□ -1.78
PCF11YDR228C CTR9P89105 1077 aa3.94□□□□□ -1.78
PCF11YDR228C SSA1P10591 642 aaKnown RBP3.93□□□□□ -1.78
PCF11YDR228C RSC6P25632 483 aa3.93□□□□□ -1.78
PCF11YDR228C YNR065CP53751 1116 aa3.93□□□□□ -1.78
PCF11YDR228C RSC4Q02206 625 aa3.93□□□□□ -1.78
PCF11YDR228C GLO4Q12320 285 aa3.93□□□□□ -1.78
PCF11YDR228C TRL1P09880 827 aaKnown RBP3.92□□□□□ -1.78
PCF11YDR228C PYC2P32327 1180 aaKnown RBP3.92□□□□□ -1.78
PCF11YDR228C ACF4P47129 309 aa3.92□□□□□ -1.78
PCF11YDR228C RPL34AP87262 121 aaPredicted RBP3.92□□□□□ -1.78
PCF11YDR228C QDR1P40475 563 aa3.92□□□□□ -1.78
PCF11YDR228C YJR124CP47159 448 aa3.92□□□□□ -1.78
PCF11YDR228C INP52P50942 1183 aa3.92□□□□□ -1.78
PCF11YDR228C UFD2P54860 961 aa3.92□□□□□ -1.78
PCF11YDR228C KAR5Q04746 504 aa3.92□□□□□ -1.78
PCF11YDR228C MNL2Q12205 849 aa3.92□□□□□ -1.78
PCF11YDR228C GLO3P38682 493 aaKnown RBP3.91□□□□□ -1.78
PCF11YDR228C SPO71Q03868 1245 aa3.91□□□□□ -1.78
PCF11YDR228C REC8Q12188 680 aa3.91□□□□□ -1.78
PCF11YDR228C COBP00163 385 aa3.9□□□□□ -1.78
PCF11YDR228C NCE103P53615 221 aa3.9□□□□□ -1.78
PCF11YDR228C HAS1Q03532 505 aaKnown RBP3.9□□□□□ -1.78
PCF11YDR228C YLR122CQ12312 125 aa3.9□□□□□ -1.78
PCF11YDR228C PRP5P21372 849 aaPredicted RBP3.9□□□□□ -1.79
PCF11YDR228C ALO1P54783 526 aaKnown RBP3.9□□□□□ -1.79
PCF11YDR228C DUR3P33413 735 aa3.89□□□□□ -1.79
PCF11YDR228C MAE1P36013 669 aaKnown RBP3.89□□□□□ -1.79
PCF11YDR228C SAF1P38352 637 aa3.89□□□□□ -1.79
PCF11YDR228C RIM11P38615 370 aa3.89□□□□□ -1.79
PCF11YDR228C TRS120Q04183 1289 aa3.89□□□□□ -1.79
PCF11YDR228C CDC3P32457 520 aaKnown RBP3.88□□□□□ -1.79
PCF11YDR228C ELG1Q12050 791 aa3.88□□□□□ -1.79
PCF11YDR228C TRP3P00937 484 aa3.88□□□□□ -1.79
PCF11YDR228C KAE1P36132 386 aa3.88□□□□□ -1.79
PCF11YDR228C MDJ2P42834 146 aa3.88□□□□□ -1.79
PCF11YDR228C YNL011CP53980 444 aa3.88□□□□□ -1.79
PCF11YDR228C MSH6Q03834 1242 aa3.88□□□□□ -1.79
PCF11YDR228C PUF3Q07807 879 aaKnown RBP RIP-Chip data3.88□□□□□ -1.79not detected
PCF11YDR228C ERS1P17261 260 aa3.87□□□□□ -1.79
PCF11YDR228C NAM7P30771 971 aaKnown RBP3.87□□□□□ -1.79
PCF11YDR228C COQ2P32378 372 aa3.87□□□□□ -1.79
PCF11YDR228C YKR073CP36153 106 aa3.87□□□□□ -1.79
PCF11YDR228C GEF1P37020 779 aa3.87□□□□□ -1.79
PCF11YDR228C NEO1P40527 1151 aa3.87□□□□□ -1.79
PCF11YDR228C FET4P40988 552 aa3.87□□□□□ -1.79
PCF11YDR228C SAP155P43612 1002 aa3.87□□□□□ -1.79
PCF11YDR228C CMR1Q12510 522 aaKnown RBP3.87□□□□□ -1.79
PCF11YDR228C NPR1P22211 790 aa3.86□□□□□ -1.79
PCF11YDR228C CDC55Q00362 526 aa3.86□□□□□ -1.79
PCF11YDR228C CHS2P14180 963 aa3.86□□□□□ -1.79
PCF11YDR228C OMA1P36163 345 aa3.86□□□□□ -1.79
PCF11YDR228C ERP5P38819 212 aa3.86□□□□□ -1.79
PCF11YDR228C MED7Q08278 222 aa3.86□□□□□ -1.79
PCF11YDR228C MAC1P35192 417 aa3.85□□□□□ -1.79
PCF11YDR228C GPI13Q07830 1017 aa3.85□□□□□ -1.79
PCF11YDR228C YIG1Q08956 461 aa3.85□□□□□ -1.79
PCF11YDR228C FRT1Q99332 602 aa3.85□□□□□ -1.79
PCF11YDR228C FLP1P03870 423 aa3.84□□□□□ -1.79
PCF11YDR228C AKR1P39010 764 aa3.84□□□□□ -1.79
PCF11YDR228C SPO74P45819 413 aa3.84□□□□□ -1.79
PCF11YDR228C CTH1P47976 325 aa3.84□□□□□ -1.79
PCF11YDR228C GCV1P48015 400 aa3.84□□□□□ -1.79
PCF11YDR228C KIP3P53086 805 aaKnown RBP3.84□□□□□ -1.79
PCF11YDR228C FAR11P53917 953 aa3.84□□□□□ -1.79
PCF11YDR228C BSC2Q05611 235 aa3.84□□□□□ -1.79
PCF11YDR228C HTS1P07263 546 aaKnown RBP3.84□□□□□ -1.8
PCF11YDR228C PUB1P32588 453 aaKnown RBP RIP-Chip data3.84□□□□□ -1.8not detected
PCF11YDR228C YBL113CQ7M4S9 792 aa3.84□□□□□ -1.8
PCF11YDR228C MSB1P21339 1137 aaKnown RBP3.83□□□□□ -1.8
PCF11YDR228C NUT1P53114 1132 aa3.83□□□□□ -1.8
PCF11YDR228C YGR130CP53278 816 aa3.83□□□□□ -1.8
PCF11YDR228C NUT2Q06213 157 aa3.83□□□□□ -1.8
PCF11YDR228C HAT1Q12341 374 aa3.83□□□□□ -1.8
PCF11YDR228C GRS1P38088 690 aaKnown RBP3.82□□□□□ -1.8
PCF11YDR228C MAG2Q06436 670 aaKnown RBP3.82□□□□□ -1.8
PCF11YDR228C YOR223WQ12015 292 aa3.82□□□□□ -1.8
PCF11YDR228C TOS1P38288 455 aa3.81□□□□□ -1.8
PCF11YDR228C MEC3Q02574 474 aa3.81□□□□□ -1.8
PCF11YDR228C GIC2Q06648 383 aa3.81□□□□□ -1.8
PCF11YDR228C YHL008CP38750 627 aa3.81□□□□□ -1.8
PCF11YDR228C YAF9P53930 226 aa3.81□□□□□ -1.8
PCF11YDR228C BRE4Q07660 1125 aa3.81□□□□□ -1.8
PCF11YDR228C CYC7P00045 113 aa3.8□□□□□ -1.8
PCF11YDR228C ECM2P38241 364 aaKnown RBP3.8□□□□□ -1.8
PCF11YDR228C PMT7Q06644 662 aa3.8□□□□□ -1.8
PCF11YDR228C YLL054CQ12244 843 aa3.8□□□□□ -1.8
PCF11YDR228C INP54Q08227 384 aaKnown RBP3.79□□□□□ -1.8
PCF11YDR228C GPT2P36148 743 aa3.79□□□□□ -1.8
PCF11YDR228C ARL1P38116 183 aaKnown RBP3.79□□□□□ -1.8
PCF11YDR228C SEA4P38164 1038 aa3.79□□□□□ -1.8
PCF11YDR228C RVS167P39743 482 aaKnown RBP3.79□□□□□ -1.8
Retrieved 100 of 5,963 RNA–protein pairs in 8.2 ms