RNA–Protein interactions for RNA: YAL043C

PTA1, Transcript of Subunit of holo-CPF, yeast

Gene PTA1, Length 2,358 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PTA1	YAL043C	RRI2	Q12348	645 aa		4.67	□□□□□ -1.66
PTA1	YAL043C	ATE1	P16639	503 aa		4.67	□□□□□ -1.66
PTA1	YAL043C	RGP1	P16664	663 aa		4.67	□□□□□ -1.66
PTA1	YAL043C	BUD6	P41697	788 aa		4.67	□□□□□ -1.66
PTA1	YAL043C	ENV11	P53246	860 aa		4.67	□□□□□ -1.66
PTA1	YAL043C	CTF4	Q01454	927 aa		4.67	□□□□□ -1.66
PTA1	YAL043C	YPR204W	Q08995	1032 aa		4.67	□□□□□ -1.66
PTA1	YAL043C	SFI1	Q12369	946 aa		4.67	□□□□□ -1.66
PTA1	YAL043C	SEC18	P18759	758 aa	Known RBP	4.66	□□□□□ -1.66
PTA1	YAL043C	IES2	P40154	320 aa		4.66	□□□□□ -1.66
PTA1	YAL043C	KRE33	P53914	1056 aa	Known RBP	4.66	□□□□□ -1.66
PTA1	YAL043C	RLP24	Q07915	199 aa	Known RBP	4.66	□□□□□ -1.66
PTA1	YAL043C	LYS2	P07702	1392 aa		4.66	□□□□□ -1.66
PTA1	YAL043C	CDC15	P27636	974 aa		4.65	□□□□□ -1.66
PTA1	YAL043C	RPT3	P33298	428 aa	Known RBP	4.65	□□□□□ -1.66
PTA1	YAL043C	URB1	P34241	1764 aa	Known RBP	4.65	□□□□□ -1.66
PTA1	YAL043C	SAP1	P39955	897 aa	Known RBP	4.65	□□□□□ -1.66
PTA1	YAL043C	PRP31	P49704	494 aa	Predicted RBP	4.65	□□□□□ -1.66
PTA1	YAL043C	HOS3	Q02959	697 aa	Known RBP	4.65	□□□□□ -1.66
PTA1	YAL043C	SNU66	Q12420	587 aa	Predicted RBP	4.65	□□□□□ -1.66
PTA1	YAL043C	COB	P00163	385 aa		4.65	□□□□□ -1.67
PTA1	YAL043C	ARG8	P18544	423 aa		4.65	□□□□□ -1.67
PTA1	YAL043C	SRP40	P32583	406 aa	Predicted RBP	4.65	□□□□□ -1.67
PTA1	YAL043C	MAL33	P38157	468 aa		4.65	□□□□□ -1.67
PTA1	YAL043C	YIR042C	P40586	236 aa		4.65	□□□□□ -1.67
PTA1	YAL043C	PIL1	P53252	339 aa	Known RBP	4.65	□□□□□ -1.67
PTA1	YAL043C	SAC6	P32599	642 aa	Known RBP	4.64	□□□□□ -1.67
PTA1	YAL043C	PCH2	P38126	564 aa		4.64	□□□□□ -1.67
PTA1	YAL043C	RTT107	P38850	1070 aa		4.64	□□□□□ -1.67
PTA1	YAL043C	MID1	P41821	548 aa		4.64	□□□□□ -1.67
PTA1	YAL043C	CTH1	P47976	325 aa		4.64	□□□□□ -1.67
PTA1	YAL043C	WAR1	Q03631	944 aa		4.64	□□□□□ -1.67
PTA1	YAL043C	SSF1	P38789	453 aa	Predicted RBP	4.64	□□□□□ -1.67
PTA1	YAL043C	HDA1	P53973	706 aa		4.64	□□□□□ -1.67
PTA1	YAL043C	UTP13	Q05946	817 aa	Known RBP	4.64	□□□□□ -1.67
PTA1	YAL043C	ENV9	Q08651	330 aa		4.64	□□□□□ -1.67
PTA1	YAL043C	ELG1	Q12050	791 aa		4.64	□□□□□ -1.67
PTA1	YAL043C	FKS3	Q04952	1785 aa		4.64	□□□□□ -1.67
PTA1	YAL043C	PET123	P17558	318 aa		4.63	□□□□□ -1.67
PTA1	YAL043C	MCM4	P30665	933 aa	Known RBP	4.63	□□□□□ -1.67
PTA1	YAL043C	RRM3	P38766	723 aa		4.63	□□□□□ -1.67
PTA1	YAL043C	YKE2	P52553	114 aa		4.63	□□□□□ -1.67
PTA1	YAL043C	PEX29	Q03370	554 aa		4.63	□□□□□ -1.67
PTA1	YAL043C	APL4	Q12028	832 aa		4.63	□□□□□ -1.67
PTA1	YAL043C	CLB5	P30283	435 aa		4.63	□□□□□ -1.67
PTA1	YAL043C	NGR1	P32831	672 aa	Known RBP	4.63	□□□□□ -1.67
PTA1	YAL043C	MSH4	P40965	878 aa	Predicted RBP	4.63	□□□□□ -1.67
PTA1	YAL043C	DUR1,2	P32528	1835 aa	Known RBP	4.62	□□□□□ -1.67
PTA1	YAL043C	CAF20	P12962	161 aa	Known RBP	4.62	□□□□□ -1.67
PTA1	YAL043C	CHL1	P22516	861 aa	Predicted RBP	4.62	□□□□□ -1.67
PTA1	YAL043C	PEP3	P27801	918 aa		4.62	□□□□□ -1.67
PTA1	YAL043C	PRE3	P38624	215 aa		4.62	□□□□□ -1.67
PTA1	YAL043C	SPT8	P38915	602 aa		4.62	□□□□□ -1.67
PTA1	YAL043C	NUG1	P40010	520 aa	Known RBP	4.62	□□□□□ -1.67
PTA1	YAL043C	TMA16	Q08687	178 aa		4.62	□□□□□ -1.67
PTA1	YAL043C	AFT2	Q08957	416 aa		4.62	□□□□□ -1.67
PTA1	YAL043C	YOL098C	Q12496	1037 aa		4.62	□□□□□ -1.67
PTA1	YAL043C	CHO2	P05374	869 aa	Known RBP	4.62	□□□□□ -1.67
PTA1	YAL043C	VPS1	P21576	704 aa	Known RBP	4.62	□□□□□ -1.67
PTA1	YAL043C	MSH3	P25336	1018 aa		4.62	□□□□□ -1.67
PTA1	YAL043C	FBP26	P32604	452 aa		4.62	□□□□□ -1.67
PTA1	YAL043C	TTI1	P36097	1038 aa		4.62	□□□□□ -1.67
PTA1	YAL043C	GDT1	P38301	280 aa	Predicted RBP	4.62	□□□□□ -1.67
PTA1	YAL043C	PTK2	P47116	818 aa	Known RBP	4.62	□□□□□ -1.67
PTA1	YAL043C	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.62	□□□□□ -1.67	not detected
PTA1	YAL043C	ELP4	Q02884	456 aa	Known RBP	4.62	□□□□□ -1.67
PTA1	YAL043C	RRB1	Q04225	511 aa	Known RBP	4.62	□□□□□ -1.67
PTA1	YAL043C	PSR2	Q07949	397 aa		4.62	□□□□□ -1.67
PTA1	YAL043C	SSP2	Q08646	371 aa		4.62	□□□□□ -1.67
PTA1	YAL043C	RSF2	P46974	1380 aa		4.61	□□□□□ -1.67
PTA1	YAL043C	HXK1	P04806	485 aa	Known RBP	4.61	□□□□□ -1.67
PTA1	YAL043C	VHR2	P40041	505 aa		4.61	□□□□□ -1.67
PTA1	YAL043C	EIS1	Q05050	843 aa	Known RBP	4.61	□□□□□ -1.67
PTA1	YAL043C	TPM1	P17536	199 aa	Known RBP	4.61	□□□□□ -1.67
PTA1	YAL043C	GSY2	P27472	705 aa		4.61	□□□□□ -1.67
PTA1	YAL043C	PRP40	P33203	583 aa	Known RBP	4.61	□□□□□ -1.67
PTA1	YAL043C	PSY4	P38193	441 aa		4.61	□□□□□ -1.67
PTA1	YAL043C	RRP8	P38961	392 aa	Known RBP	4.61	□□□□□ -1.67
PTA1	YAL043C	AKR1	P39010	764 aa		4.61	□□□□□ -1.67
PTA1	YAL043C	HYR1	P40581	163 aa	Known RBP	4.61	□□□□□ -1.67
PTA1	YAL043C	YPL216W	Q08964	1102 aa		4.61	□□□□□ -1.67
PTA1	YAL043C	LAM4	P38800	1345 aa		4.6	□□□□□ -1.67
PTA1	YAL043C	PDC1	P06169	563 aa	Known RBP	4.6	□□□□□ -1.67
PTA1	YAL043C	LTV1	P34078	463 aa		4.6	□□□□□ -1.67
PTA1	YAL043C	SPO22	P40511	975 aa		4.6	□□□□□ -1.67
PTA1	YAL043C	VPS70	P47161	811 aa		4.6	□□□□□ -1.67
PTA1	YAL043C	CSC1	Q06538	782 aa		4.6	□□□□□ -1.67
PTA1	YAL043C	DDP1	Q99321	188 aa	Known RBP	4.6	□□□□□ -1.67
PTA1	YAL043C	PFK2	P16862	959 aa	Known RBP RIP-Chip data	4.6	□□□□□ -1.67	not detected
PTA1	YAL043C	SEC65	P29478	273 aa		4.6	□□□□□ -1.67
PTA1	YAL043C	RPN10	P38886	268 aa	Known RBP	4.6	□□□□□ -1.67
PTA1	YAL043C	DOT5	P40553	215 aa		4.6	□□□□□ -1.67
PTA1	YAL043C	STU2	P46675	888 aa		4.6	□□□□□ -1.67
PTA1	YAL043C	HGH1	P48362	394 aa	Known RBP	4.6	□□□□□ -1.67
PTA1	YAL043C	ALD3	P54114	506 aa		4.6	□□□□□ -1.67
PTA1	YAL043C	TLG2	Q08144	397 aa		4.6	□□□□□ -1.67
PTA1	YAL043C	CDC6	P09119	513 aa		4.59	□□□□□ -1.67
PTA1	YAL043C	UBP14	P38237	781 aa	Known RBP	4.59	□□□□□ -1.67
PTA1	YAL043C	SLI15	P38283	698 aa		4.59	□□□□□ -1.67
PTA1	YAL043C	INM2	Q05533	292 aa		4.59	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 19.9 ms