RNA–Protein interactions for RNA: YPR110C

RPC40, Transcript of RNA polymerase subunit AC40, yeast

Gene RPC40, Length 1,008 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPC40	YPR110C	PAM1	P37304	830 aa	Known RBP	4.75	□□□□□ -1.65
RPC40	YPR110C	POL32	P47110	350 aa		4.75	□□□□□ -1.65
RPC40	YPR110C	SCW11	P53189	542 aa		4.75	□□□□□ -1.65
RPC40	YPR110C	YLR346C	Q06139	101 aa		4.75	□□□□□ -1.65
RPC40	YPR110C	GPI13	Q07830	1017 aa		4.75	□□□□□ -1.65
RPC40	YPR110C	MLF3	P32047	452 aa		4.74	□□□□□ -1.65
RPC40	YPR110C	LDH1	P38139	375 aa		4.74	□□□□□ -1.65
RPC40	YPR110C	HXT8	P40886	569 aa		4.74	□□□□□ -1.65
RPC40	YPR110C	YJR098C	P47139	656 aa		4.74	□□□□□ -1.65
RPC40	YPR110C	NOP7	P53261	605 aa	Known RBP	4.74	□□□□□ -1.65
RPC40	YPR110C	HPF1	Q05164	967 aa		4.74	□□□□□ -1.65
RPC40	YPR110C	LEU1	P07264	779 aa	Known RBP	4.73	□□□□□ -1.65
RPC40	YPR110C	KAP122	P32767	1081 aa		4.73	□□□□□ -1.65
RPC40	YPR110C	AHP1	P38013	176 aa	Known RBP	4.73	□□□□□ -1.65
RPC40	YPR110C	DYS1	P38791	387 aa		4.73	□□□□□ -1.65
RPC40	YPR110C	THI12	P42883	340 aa		4.73	□□□□□ -1.65
RPC40	YPR110C	THI5	P43534	340 aa		4.73	□□□□□ -1.65
RPC40	YPR110C	THI11	P47183	340 aa		4.73	□□□□□ -1.65
RPC40	YPR110C	ALD2	P47771	506 aa		4.73	□□□□□ -1.65
RPC40	YPR110C	SUT1	P53032	299 aa	Known RBP	4.73	□□□□□ -1.65
RPC40	YPR110C	YGR035C	P53222	116 aa		4.73	□□□□□ -1.65
RPC40	YPR110C	LSC2	P53312	427 aa		4.73	□□□□□ -1.65
RPC40	YPR110C	RSC4	Q02206	625 aa		4.73	□□□□□ -1.65
RPC40	YPR110C	THI13	Q07748	340 aa		4.73	□□□□□ -1.65
RPC40	YPR110C	TY1A-DR3	Q12441	440 aa		4.73	□□□□□ -1.65
RPC40	YPR110C	PHO4	P07270	312 aa	Known RBP	4.72	□□□□□ -1.65
RPC40	YPR110C	YTA6	P40328	754 aa		4.72	□□□□□ -1.65
RPC40	YPR110C	NTA1	P40354	457 aa		4.72	□□□□□ -1.65
RPC40	YPR110C	QDR2	P40474	542 aa		4.72	□□□□□ -1.65
RPC40	YPR110C	YJR107W	P47145	328 aa		4.72	□□□□□ -1.65
RPC40	YPR110C	YNL011C	P53980	444 aa		4.72	□□□□□ -1.65
RPC40	YPR110C	TCB1	Q12466	1186 aa		4.72	□□□□□ -1.65
RPC40	YPR110C	RPC31	P17890	251 aa		4.71	□□□□□ -1.66
RPC40	YPR110C	MSN1	P22148	382 aa		4.71	□□□□□ -1.66
RPC40	YPR110C	PDC6	P26263	563 aa	Known RBP	4.71	□□□□□ -1.66
RPC40	YPR110C	MGE1	P38523	228 aa		4.71	□□□□□ -1.66
RPC40	YPR110C	CDC55	Q00362	526 aa		4.71	□□□□□ -1.66
RPC40	YPR110C	PSH1	Q12161	406 aa		4.71	□□□□□ -1.66
RPC40	YPR110C	STB3	Q12427	513 aa		4.71	□□□□□ -1.66
RPC40	YPR110C	TRK2	P28584	889 aa		4.7	□□□□□ -1.66
RPC40	YPR110C	VPS35	P34110	944 aa		4.7	□□□□□ -1.66
RPC40	YPR110C	RGD2	P43556	714 aa		4.7	□□□□□ -1.66
RPC40	YPR110C	SKP1	P52286	194 aa		4.7	□□□□□ -1.66
RPC40	YPR110C	SVF1	Q05515	481 aa		4.7	□□□□□ -1.66
RPC40	YPR110C	SEC8	P32855	1065 aa		4.69	□□□□□ -1.66
RPC40	YPR110C	ISW1	P38144	1129 aa		4.69	□□□□□ -1.66
RPC40	YPR110C	YBR287W	P38355	427 aa		4.69	□□□□□ -1.66
RPC40	YPR110C	RAD55	P38953	406 aa		4.69	□□□□□ -1.66
RPC40	YPR110C	FIR1	P40020	876 aa		4.69	□□□□□ -1.66
RPC40	YPR110C	UBP15	P50101	1230 aa		4.69	□□□□□ -1.66
RPC40	YPR110C	SAM37	P50110	327 aa		4.69	□□□□□ -1.66
RPC40	YPR110C	YOR296W	Q08748	1289 aa		4.69	□□□□□ -1.66
RPC40	YPR110C	CCP1	P00431	361 aa		4.68	□□□□□ -1.66
RPC40	YPR110C	CDC19	P00549	500 aa	Known RBP	4.68	□□□□□ -1.66
RPC40	YPR110C	GCD6	P32501	712 aa	Known RBP	4.68	□□□□□ -1.66
RPC40	YPR110C	IRS4	P36115	615 aa	Known RBP	4.68	□□□□□ -1.66
RPC40	YPR110C	GIP1	P38229	639 aa		4.68	□□□□□ -1.66
RPC40	YPR110C	ROG3	P43602	733 aa		4.68	□□□□□ -1.66
RPC40	YPR110C	MTO1	P53070	669 aa		4.68	□□□□□ -1.66
RPC40	YPR110C	UBP2	Q01476	1272 aa		4.68	□□□□□ -1.66
RPC40	YPR110C	RGP1	P16664	663 aa		4.67	□□□□□ -1.66
RPC40	YPR110C	PSY2	P40164	858 aa		4.67	□□□□□ -1.66
RPC40	YPR110C	DAK2	P43550	591 aa		4.67	□□□□□ -1.66
RPC40	YPR110C	OYE2	Q03558	400 aa	Known RBP	4.67	□□□□□ -1.66
RPC40	YPR110C	TIF6	Q12522	245 aa	Known RBP	4.67	□□□□□ -1.66
RPC40	YPR110C	NAB2	P32505	525 aa	Known RBP RIP-Chip data	4.66	□□□□□ -1.66	not detected
RPC40	YPR110C	OSH7	P38755	437 aa		4.66	□□□□□ -1.66
RPC40	YPR110C	CIC1	P38779	376 aa	Known RBP	4.66	□□□□□ -1.66
RPC40	YPR110C	MET10	P39692	1035 aa		4.66	□□□□□ -1.66
RPC40	YPR110C	TY1A-MR1	Q04215	440 aa		4.66	□□□□□ -1.66
RPC40	YPR110C	BSC2	Q05611	235 aa		4.66	□□□□□ -1.66
RPC40	YPR110C	BSD2	P38356	321 aa		4.65	□□□□□ -1.67
RPC40	YPR110C	CUS1	Q02554	436 aa	Predicted RBP	4.65	□□□□□ -1.67
RPC40	YPR110C	RMD1	Q03441	430 aa		4.65	□□□□□ -1.67
RPC40	YPR110C	NOC3	Q07896	663 aa	Predicted RBP	4.65	□□□□□ -1.67
RPC40	YPR110C	FLP1	P03870	423 aa		4.64	□□□□□ -1.67
RPC40	YPR110C	RPT1	P33299	467 aa	Known RBP	4.64	□□□□□ -1.67
RPC40	YPR110C	APM2	P38700	605 aa		4.64	□□□□□ -1.67
RPC40	YPR110C	YIL165C	P40446	119 aa		4.64	□□□□□ -1.67
RPC40	YPR110C	ITC1	P53125	1264 aa		4.64	□□□□□ -1.67
RPC40	YPR110C	EMG1	Q06287	252 aa	Known RBP	4.64	□□□□□ -1.67
RPC40	YPR110C	RPP1A	P05318	106 aa	Predicted RBP	4.63	□□□□□ -1.67
RPC40	YPR110C	MET1	P36150	593 aa		4.63	□□□□□ -1.67
RPC40	YPR110C	MRPL16	P38064	232 aa		4.63	□□□□□ -1.67
RPC40	YPR110C	AIM46	P38885	310 aa		4.63	□□□□□ -1.67
RPC40	YPR110C	FYV10	P40492	516 aa		4.63	□□□□□ -1.67
RPC40	YPR110C	CTR9	P89105	1077 aa		4.63	□□□□□ -1.67
RPC40	YPR110C	NAM8	Q00539	523 aa	Known RBP	4.63	□□□□□ -1.67
RPC40	YPR110C	OXR1	Q08952	273 aa		4.63	□□□□□ -1.67
RPC40	YPR110C	NAP1	P25293	417 aa	Known RBP	4.62	□□□□□ -1.67
RPC40	YPR110C	MCM2	P29469	868 aa		4.62	□□□□□ -1.67
RPC40	YPR110C	YGR122W	P53272	402 aa		4.62	□□□□□ -1.67
RPC40	YPR110C	YNR040W	P53736	256 aa		4.62	□□□□□ -1.67
RPC40	YPR110C	MSH6	Q03834	1242 aa		4.62	□□□□□ -1.67
RPC40	YPR110C	HXK1	P04806	485 aa	Known RBP	4.61	□□□□□ -1.67
RPC40	YPR110C	YER156C	P40093	338 aa	Known RBP	4.61	□□□□□ -1.67
RPC40	YPR110C	MTC5	Q03897	1148 aa		4.61	□□□□□ -1.67
RPC40	YPR110C	YCS4	Q06156	1176 aa		4.61	□□□□□ -1.67
RPC40	YPR110C	TOS4	Q06266	489 aa		4.61	□□□□□ -1.67
RPC40	YPR110C	INP54	Q08227	384 aa	Known RBP	4.61	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 56.8 ms