RNA–Protein interactions for RNA: YOR098C

NUP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP1, Length 3,231 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP1	YOR098C	YFR016C	P43597	1233 aa	Known RBP	6.6	□□□□□ -1.35
NUP1	YOR098C	TYW3	P53177	273 aa		6.6	□□□□□ -1.35
NUP1	YOR098C	VPS35	P34110	944 aa		6.6	□□□□□ -1.35
NUP1	YOR098C	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	6.6	□□□□□ -1.35	not detected
NUP1	YOR098C	YDL206W	Q12424	762 aa		6.6	□□□□□ -1.35
NUP1	YOR098C	RPN12	P32496	274 aa		6.59	□□□□□ -1.35
NUP1	YOR098C	MFT1	P33441	392 aa	Known RBP	6.59	□□□□□ -1.35
NUP1	YOR098C	FAA3	P39002	694 aa		6.59	□□□□□ -1.35
NUP1	YOR098C	ATG16	Q03818	150 aa		6.59	□□□□□ -1.35
NUP1	YOR098C	SLX4	Q12098	748 aa		6.59	□□□□□ -1.35
NUP1	YOR098C	FLC1	Q08967	793 aa		6.59	□□□□□ -1.35
NUP1	YOR098C	SNF7	P39929	240 aa	Known RBP	6.59	□□□□□ -1.36
NUP1	YOR098C	OPI10	Q08202	246 aa		6.59	□□□□□ -1.36
NUP1	YOR098C	RSP5	P39940	809 aa	Known RBP	6.58	□□□□□ -1.36
NUP1	YOR098C	YJR120W	P47157	116 aa		6.58	□□□□□ -1.36
NUP1	YOR098C	MTC5	Q03897	1148 aa		6.58	□□□□□ -1.36
NUP1	YOR098C	TMA17	Q12513	150 aa		6.58	□□□□□ -1.36
NUP1	YOR098C	NFU1	P32860	256 aa		6.58	□□□□□ -1.36
NUP1	YOR098C	HAL5	P38970	855 aa	Known RBP	6.58	□□□□□ -1.36
NUP1	YOR098C	YCK3	P39962	524 aa		6.58	□□□□□ -1.36
NUP1	YOR098C	UFD2	P54860	961 aa		6.58	□□□□□ -1.36
NUP1	YOR098C	APC11	Q12157	165 aa		6.58	□□□□□ -1.36
NUP1	YOR098C	KOG1	P38873	1557 aa		6.58	□□□□□ -1.36
NUP1	YOR098C	DPS1	P04802	557 aa	Known RBP	6.57	□□□□□ -1.36
NUP1	YOR098C	HXK1	P04806	485 aa	Known RBP	6.57	□□□□□ -1.36
NUP1	YOR098C	RPL8A	P17076	256 aa	Known RBP	6.57	□□□□□ -1.36
NUP1	YOR098C	VMS1	Q04311	632 aa	Known RBP	6.57	□□□□□ -1.36
NUP1	YOR098C	BDS1	Q08347	646 aa		6.57	□□□□□ -1.36
NUP1	YOR098C	HSL1	P34244	1518 aa		6.57	□□□□□ -1.36
NUP1	YOR098C	DPB3	P27344	201 aa		6.57	□□□□□ -1.36
NUP1	YOR098C	ISC10	P32645	267 aa		6.57	□□□□□ -1.36
NUP1	YOR098C	YGR021W	P53212	290 aa		6.57	□□□□□ -1.36
NUP1	YOR098C	ESF2	P53743	316 aa	Known RBP	6.57	□□□□□ -1.36
NUP1	YOR098C	KTR2	P33550	425 aa		6.57	□□□□□ -1.36
NUP1	YOR098C	YBR197C	P38306	217 aa		6.57	□□□□□ -1.36
NUP1	YOR098C	DAN4	P47179	1161 aa		6.57	□□□□□ -1.36
NUP1	YOR098C	MMS22	Q06164	1454 aa		6.56	□□□□□ -1.36
NUP1	YOR098C	SAM37	P50110	327 aa		6.56	□□□□□ -1.36
NUP1	YOR098C	ERP4	Q12450	207 aa		6.56	□□□□□ -1.36
NUP1	YOR098C	SPT6	P23615	1451 aa	Known RBP	6.56	□□□□□ -1.36
NUP1	YOR098C	PIF1	P07271	859 aa		6.56	□□□□□ -1.36
NUP1	YOR098C	YHL008C	P38750	627 aa		6.56	□□□□□ -1.36
NUP1	YOR098C	AIM9	P40053	627 aa	Known RBP	6.56	□□□□□ -1.36
NUP1	YOR098C	IES5	P40060	125 aa		6.56	□□□□□ -1.36
NUP1	YOR098C	NTG2	Q08214	380 aa		6.56	□□□□□ -1.36
NUP1	YOR098C	CDC34	P14682	295 aa		6.55	□□□□□ -1.36
NUP1	YOR098C	UBP1	P25037	809 aa		6.55	□□□□□ -1.36
NUP1	YOR098C	OXR1	Q08952	273 aa		6.55	□□□□□ -1.36
NUP1	YOR098C	DUT1	P33317	147 aa		6.55	□□□□□ -1.36
NUP1	YOR098C	DAS1	P47005	663 aa		6.55	□□□□□ -1.36
NUP1	YOR098C	SND1	Q04007	877 aa		6.55	□□□□□ -1.36
NUP1	YOR098C	CDC55	Q00362	526 aa		6.55	□□□□□ -1.36
NUP1	YOR098C	CCP1	P00431	361 aa		6.54	□□□□□ -1.36
NUP1	YOR098C	IES1	P43579	692 aa		6.54	□□□□□ -1.36
NUP1	YOR098C	YGR053C	P53234	283 aa		6.54	□□□□□ -1.36
NUP1	YOR098C	BDP1	P46678	594 aa		6.54	□□□□□ -1.36
NUP1	YOR098C	STR2	P47164	639 aa		6.54	□□□□□ -1.36
NUP1	YOR098C	TMA7	Q3E764	64 aa	Known RBP	6.54	□□□□□ -1.36
NUP1	YOR098C	NTH2	P35172	780 aa		6.54	□□□□□ -1.36
NUP1	YOR098C	NIT1	P40447	199 aa		6.54	□□□□□ -1.36
NUP1	YOR098C	HIR1	P32479	840 aa		6.53	□□□□□ -1.36
NUP1	YOR098C	RPS0B	P46654	252 aa	Known RBP	6.53	□□□□□ -1.36
NUP1	YOR098C	YNL011C	P53980	444 aa		6.53	□□□□□ -1.36
NUP1	YOR098C	ATG13	Q06628	738 aa		6.53	□□□□□ -1.36
NUP1	YOR098C	CIT1	P00890	479 aa		6.53	□□□□□ -1.36
NUP1	YOR098C	VID27	P40157	782 aa		6.53	□□□□□ -1.36
NUP1	YOR098C	CWH41	P53008	833 aa		6.53	□□□□□ -1.36
NUP1	YOR098C	YGR125W	P53273	1036 aa		6.53	□□□□□ -1.36
NUP1	YOR098C	CAB1	Q04430	367 aa		6.53	□□□□□ -1.36
NUP1	YOR098C	NYV1	Q12255	253 aa		6.53	□□□□□ -1.36
NUP1	YOR098C	NGR1	P32831	672 aa	Known RBP	6.52	□□□□□ -1.37
NUP1	YOR098C	STE5	P32917	917 aa		6.52	□□□□□ -1.37
NUP1	YOR098C	YFL034W	P43564	1073 aa		6.52	□□□□□ -1.37
NUP1	YOR098C	CAN1	P04817	590 aa		6.52	□□□□□ -1.37
NUP1	YOR098C	HTA1	P04911	132 aa	Known RBP	6.52	□□□□□ -1.37
NUP1	YOR098C	HTA2	P04912	132 aa		6.52	□□□□□ -1.37
NUP1	YOR098C	SRF1	Q12516	437 aa		6.52	□□□□□ -1.37
NUP1	YOR098C	MSH2	P25847	964 aa		6.51	□□□□□ -1.37
NUP1	YOR098C	MTC2	P34246	357 aa		6.51	□□□□□ -1.37
NUP1	YOR098C	YGR237C	P50089	785 aa		6.51	□□□□□ -1.37
NUP1	YOR098C	SUT1	P53032	299 aa	Known RBP	6.51	□□□□□ -1.37
NUP1	YOR098C	ESC2	Q06340	456 aa		6.51	□□□□□ -1.37
NUP1	YOR098C	HDA3	Q06623	655 aa		6.51	□□□□□ -1.37
NUP1	YOR098C	CYT1	P07143	309 aa		6.51	□□□□□ -1.37
NUP1	YOR098C	HOS4	P40480	1083 aa		6.51	□□□□□ -1.37
NUP1	YOR098C	AGE1	Q04412	482 aa		6.51	□□□□□ -1.37
NUP1	YOR098C	NOC3	Q07896	663 aa	Predicted RBP	6.51	□□□□□ -1.37
NUP1	YOR098C	ATP4	P05626	244 aa		6.5	□□□□□ -1.37
NUP1	YOR098C	PRE9	P23638	258 aa	Known RBP	6.5	□□□□□ -1.37
NUP1	YOR098C	RPS0A	P32905	252 aa	Known RBP	6.5	□□□□□ -1.37
NUP1	YOR098C	IXR1	P33417	597 aa		6.5	□□□□□ -1.37
NUP1	YOR098C	CIC1	P38779	376 aa	Known RBP	6.5	□□□□□ -1.37
NUP1	YOR098C	RPA14	P50106	137 aa		6.5	□□□□□ -1.37
NUP1	YOR098C	ISR1	Q06098	443 aa	Known RBP	6.5	□□□□□ -1.37
NUP1	YOR098C	FAL1	Q12099	399 aa	Known RBP	6.5	□□□□□ -1.37
NUP1	YOR098C	SFP1	P32432	683 aa		6.5	□□□□□ -1.37
NUP1	YOR098C	YKL222C	P35995	705 aa		6.5	□□□□□ -1.37
NUP1	YOR098C	SNU66	Q12420	587 aa	Predicted RBP	6.5	□□□□□ -1.37
NUP1	YOR098C	MPH2	P0CD99	609 aa		6.5	□□□□□ -1.37
NUP1	YOR098C	YEF3	P16521	1044 aa	Known RBP	6.5	□□□□□ -1.37

Retrieved 100 of 5,963 RNA–protein pairs in 22.6 ms