RNA–Protein interactions for RNA: YEL031W

SPF1, Transcript of P-type ATPase, ion transporter of the ER membrane, yeast

Gene SPF1, Length 3,648 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SPF1	YEL031W	ERV41	Q04651	352 aa		2.69	□□□□□ -1.98
SPF1	YEL031W	PDR18	P53756	1333 aa		2.69	□□□□□ -1.98
SPF1	YEL031W	RPO26	P20435	155 aa		2.69	□□□□□ -1.98
SPF1	YEL031W	SEC14	P24280	304 aa	Known RBP	2.69	□□□□□ -1.98
SPF1	YEL031W	RAD51	P25454	400 aa		2.69	□□□□□ -1.98
SPF1	YEL031W	SEG2	P34250	1132 aa		2.69	□□□□□ -1.98
SPF1	YEL031W	CSE4	P36012	229 aa		2.69	□□□□□ -1.98
SPF1	YEL031W	SET1	P38827	1080 aa	Known RBP	2.69	□□□□□ -1.98
SPF1	YEL031W	MRX12	P47084	519 aa		2.69	□□□□□ -1.98
SPF1	YEL031W	YMR102C	Q03177	834 aa		2.69	□□□□□ -1.98
SPF1	YEL031W	RBA50	Q04418	439 aa		2.69	□□□□□ -1.98
SPF1	YEL031W	SGD1	Q06132	899 aa		2.69	□□□□□ -1.98
SPF1	YEL031W	RTT109	Q07794	436 aa		2.69	□□□□□ -1.98
SPF1	YEL031W	DDP1	Q99321	188 aa	Known RBP	2.69	□□□□□ -1.98
SPF1	YEL031W	USO1	P25386	1790 aa		2.69	□□□□□ -1.98
SPF1	YEL031W	AI2	P03876	854 aa		2.68	□□□□□ -1.98
SPF1	YEL031W	RPS19A	P07280	144 aa	Known RBP	2.68	□□□□□ -1.98
SPF1	YEL031W	RPS19B	P07281	144 aa	Predicted RBP	2.68	□□□□□ -1.98
SPF1	YEL031W	RPB2	P08518	1224 aa	Known RBP	2.68	□□□□□ -1.98
SPF1	YEL031W	ATE1	P16639	503 aa		2.68	□□□□□ -1.98
SPF1	YEL031W	SIS1	P25294	352 aa	Known RBP	2.68	□□□□□ -1.98
SPF1	YEL031W	YKT6	P36015	200 aa	Known RBP	2.68	□□□□□ -1.98
SPF1	YEL031W	DID4	P36108	232 aa		2.68	□□□□□ -1.98
SPF1	YEL031W	BRN1	P38170	754 aa		2.68	□□□□□ -1.98
SPF1	YEL031W	PET100	P38958	111 aa		2.68	□□□□□ -1.98
SPF1	YEL031W	CCT4	P39078	528 aa	Known RBP	2.68	□□□□□ -1.98
SPF1	YEL031W	SCY1	P53009	804 aa		2.68	□□□□□ -1.98
SPF1	YEL031W	RRP46	P53256	223 aa	Predicted RBP	2.68	□□□□□ -1.98
SPF1	YEL031W	VTC3	Q02725	835 aa		2.68	□□□□□ -1.98
SPF1	YEL031W	TSR1	Q07381	788 aa	Known RBP	2.68	□□□□□ -1.98
SPF1	YEL031W	TLG2	Q08144	397 aa		2.68	□□□□□ -1.98
SPF1	YEL031W	RAD5	P32849	1169 aa	Predicted RBP	2.68	□□□□□ -1.98
SPF1	YEL031W	PRX1	P34227	261 aa	Known RBP	2.68	□□□□□ -1.98
SPF1	YEL031W	MUD2	P36084	527 aa	Known RBP	2.68	□□□□□ -1.98
SPF1	YEL031W	VPS70	P47161	811 aa		2.68	□□□□□ -1.98
SPF1	YEL031W	YGL081W	P53156	320 aa		2.68	□□□□□ -1.98
SPF1	YEL031W	DSL1	P53847	754 aa		2.68	□□□□□ -1.98
SPF1	YEL031W	YML119W	Q03208	357 aa		2.68	□□□□□ -1.98
SPF1	YEL031W	OSH2	Q12451	1283 aa		2.68	□□□□□ -1.98
SPF1	YEL031W	NCB2	Q92317	146 aa		2.68	□□□□□ -1.98
SPF1	YEL031W	EFB1	P32471	206 aa	Known RBP	2.68	□□□□□ -1.98
SPF1	YEL031W	NAB3	P38996	802 aa	Known RBP RIP-Chip data	2.68	□□□□□ -1.98	not detected
SPF1	YEL031W	ZDS1	P50111	915 aa	Known RBP	2.68	□□□□□ -1.98
SPF1	YEL031W	STE20	Q03497	939 aa	Known RBP	2.68	□□□□□ -1.98
SPF1	YEL031W	MSB4	Q12317	492 aa		2.68	□□□□□ -1.98
SPF1	YEL031W	YKL068W-A	Q3E826	78 aa		2.68	□□□□□ -1.98
SPF1	YEL031W	TOP1	P04786	769 aa		2.67	□□□□□ -1.98
SPF1	YEL031W	YMR085W	P0CF18	432 aa		2.67	□□□□□ -1.98
SPF1	YEL031W	CDC10	P25342	322 aa	Known RBP	2.67	□□□□□ -1.98
SPF1	YEL031W	YSW1	P38280	609 aa		2.67	□□□□□ -1.98
SPF1	YEL031W	YAP3	P38749	330 aa		2.67	□□□□□ -1.98
SPF1	YEL031W	SET2	P46995	733 aa	Known RBP	2.67	□□□□□ -1.98
SPF1	YEL031W	MTR4	P47047	1073 aa	Known RBP	2.67	□□□□□ -1.98
SPF1	YEL031W	CTH1	P47976	325 aa		2.67	□□□□□ -1.98
SPF1	YEL031W	ALF1	P53904	254 aa		2.67	□□□□□ -1.98
SPF1	YEL031W	SPO19	Q03029	223 aa		2.67	□□□□□ -1.98
SPF1	YEL031W	RRB1	Q04225	511 aa	Known RBP	2.67	□□□□□ -1.98
SPF1	YEL031W	STE23	Q06010	1027 aa		2.67	□□□□□ -1.98
SPF1	YEL031W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	2.67	□□□□□ -1.98	not detected
SPF1	YEL031W	TOM70	P07213	617 aa	Known RBP	2.67	□□□□□ -1.98
SPF1	YEL031W	PSE1	P32337	1089 aa	Known RBP	2.67	□□□□□ -1.98
SPF1	YEL031W	GCD7	P32502	381 aa	Predicted RBP	2.67	□□□□□ -1.98
SPF1	YEL031W	SWE1	P32944	819 aa		2.67	□□□□□ -1.98
SPF1	YEL031W	CNS1	P33313	385 aa		2.67	□□□□□ -1.98
SPF1	YEL031W	TFC3	P34111	1160 aa		2.67	□□□□□ -1.98
SPF1	YEL031W	EXO84	P38261	753 aa		2.67	□□□□□ -1.98
SPF1	YEL031W	GDT1	P38301	280 aa	Predicted RBP	2.67	□□□□□ -1.98
SPF1	YEL031W	YHL017W	P38745	532 aa		2.67	□□□□□ -1.98
SPF1	YEL031W	LIN1	P38852	340 aa	Predicted RBP	2.67	□□□□□ -1.98
SPF1	YEL031W	APT1	P49435	187 aa	Known RBP	2.67	□□□□□ -1.98
SPF1	YEL031W	SPO1	P53541	631 aa		2.67	□□□□□ -1.98
SPF1	YEL031W	SLK19	Q08581	821 aa	Known RBP	2.67	□□□□□ -1.98
SPF1	YEL031W	YPL225W	Q08971	146 aa	Known RBP	2.67	□□□□□ -1.98
SPF1	YEL031W	CDC37	P06101	506 aa	Known RBP	2.67	□□□□□ -1.98
SPF1	YEL031W	SPT5	P27692	1063 aa	Known RBP	2.67	□□□□□ -1.98
SPF1	YEL031W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	2.67	□□□□□ -1.98	not detected
SPF1	YEL031W	DSF2	P38213	736 aa		2.67	□□□□□ -1.98
SPF1	YEL031W	YPT11	P48559	417 aa		2.67	□□□□□ -1.98
SPF1	YEL031W	ASI1	P54074	624 aa		2.67	□□□□□ -1.98
SPF1	YEL031W	TAL1	P15019	335 aa	Known RBP	2.66	□□□□□ -1.98
SPF1	YEL031W	PSO2	P30620	661 aa		2.66	□□□□□ -1.98
SPF1	YEL031W	CDC3	P32457	520 aa	Known RBP	2.66	□□□□□ -1.98
SPF1	YEL031W	RFT1	P38206	574 aa	Predicted RBP	2.66	□□□□□ -1.98
SPF1	YEL031W	RCR1	P38212	213 aa		2.66	□□□□□ -1.98
SPF1	YEL031W	HXT13	P39924	564 aa		2.66	□□□□□ -1.98
SPF1	YEL031W	BUD16	P39988	312 aa		2.66	□□□□□ -1.98
SPF1	YEL031W	GPD2	P41911	440 aa	Known RBP	2.66	□□□□□ -1.98
SPF1	YEL031W	BDP1	P46678	594 aa		2.66	□□□□□ -1.98
SPF1	YEL031W	VPS75	P53853	264 aa		2.66	□□□□□ -1.98
SPF1	YEL031W	BRE1	Q07457	700 aa	Known RBP	2.66	□□□□□ -1.98
SPF1	YEL031W	ABP140	Q08641	628 aa	Known RBP	2.66	□□□□□ -1.98
SPF1	YEL031W	ELG1	Q12050	791 aa		2.66	□□□□□ -1.98
SPF1	YEL031W	LEU2	P04173	364 aa	Predicted RBP	2.66	□□□□□ -1.98
SPF1	YEL031W	UBP1	P25037	809 aa		2.66	□□□□□ -1.98
SPF1	YEL031W	ASF1	P32447	279 aa		2.66	□□□□□ -1.98
SPF1	YEL031W	TOA1	P32773	286 aa		2.66	□□□□□ -1.98
SPF1	YEL031W	MNR2	P35724	969 aa		2.66	□□□□□ -1.98
SPF1	YEL031W	BCH2	P36122	765 aa		2.66	□□□□□ -1.98
SPF1	YEL031W	PPX1	P38698	397 aa		2.66	□□□□□ -1.98
SPF1	YEL031W	SSF1	P38789	453 aa	Predicted RBP	2.66	□□□□□ -1.98

Retrieved 100 of 5,963 RNA–protein pairs in 9.6 ms