RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 SPIRE2Q8WWL2 714 aa7.4□□□□□ -1.22
SPG11-211ENST00000558561 TBC1D2Q9BYX2 928 aa7.4□□□□□ -1.22
SPG11-211ENST00000558561 IFT140Q96RY7 1462 aa7.39□□□□□ -1.23
SPG11-211ENST00000558561 KDM4AO75164 1064 aa7.39□□□□□ -1.23
SPG11-211ENST00000558561 NUTM1Q86Y26 1132 aa7.39□□□□□ -1.23
SPG11-211ENST00000558561 RNF166Q96A37 237 aaPredicted RBP7.38□□□□□ -1.23
SPG11-211ENST00000558561 POLR3EQ9NVU0 708 aa7.38□□□□□ -1.23
SPG11-211ENST00000558561 FUT2Q10981 343 aa7.37□□□□□ -1.23
SPG11-211ENST00000558561 TMEM132AQ24JP5 1023 aa7.37□□□□□ -1.23
SPG11-211ENST00000558561 KMT5BQ4FZB7 885 aa7.37□□□□□ -1.23
SPG11-211ENST00000558561 SYNJ1O43426 1573 aa7.37□□□□□ -1.23
SPG11-211ENST00000558561 NDUFV2P19404 249 aa7.36□□□□□ -1.23
SPG11-211ENST00000558561 MYSM1Q5VVJ2 828 aa7.36□□□□□ -1.23
SPG11-211ENST00000558561 NECTIN2Q92692 538 aa7.36□□□□□ -1.23
SPG11-211ENST00000558561 HLA-CQ95604 372 aa7.36□□□□□ -1.23
SPG11-211ENST00000558561 RSPH6AQ9H0K4 717 aa7.36□□□□□ -1.23
SPG11-211ENST00000558561 EIF4G3O43432 1585 aaKnown RBP7.35□□□□□ -1.23
SPG11-211ENST00000558561 MOXD2PA6NHM9 499 aa7.35□□□□□ -1.23
SPG11-211ENST00000558561 ACTN4O43707 911 aaKnown RBP7.35□□□□□ -1.23
SPG11-211ENST00000558561 PUS10Q3MIT2 529 aaKnown RBP7.35□□□□□ -1.23
SPG11-211ENST00000558561 PROCA1Q8NCQ7 364 aaPredicted RBP7.35□□□□□ -1.23
SPG11-211ENST00000558561 HOXA2O43364 376 aa7.34□□□□□ -1.23
SPG11-211ENST00000558561 ATP6V1AP38606 617 aa7.34□□□□□ -1.23
SPG11-211ENST00000558561 USP46P62068 366 aa7.34□□□□□ -1.23
SPG11-211ENST00000558561 GUCA2AQ02747 115 aa7.34□□□□□ -1.23
SPG11-211ENST00000558561 SKIV2LQ15477 1246 aaKnown RBP7.34□□□□□ -1.23
SPG11-211ENST00000558561 DIXDC1Q155Q3 683 aa7.34□□□□□ -1.23
SPG11-211ENST00000558561 SH3D19Q5HYK7 790 aa7.34□□□□□ -1.23
SPG11-211ENST00000558561 RIC3Q7Z5B4 369 aa7.34□□□□□ -1.23
SPG11-211ENST00000558561 WRNQ14191 1432 aaPredicted RBP eCLIP7.34□□□□□ -1.23
SPG11-211ENST00000558561 PRR14Q9BWN1 585 aa7.33□□□□□ -1.24
SPG11-211ENST00000558561 HCSTQ9UBK5 93 aa7.33□□□□□ -1.24
SPG11-211ENST00000558561 LIMD1Q9UGP4 676 aa7.33□□□□□ -1.24
SPG11-211ENST00000558561 PCDHB15Q9Y5E8 787 aa7.33□□□□□ -1.24
SPG11-211ENST00000558561 SPTLC1O15269 473 aa7.32□□□□□ -1.24
SPG11-211ENST00000558561 MORN1Q5T089 497 aa7.32□□□□□ -1.24
SPG11-211ENST00000558561 RSBN1LQ6PCB5 846 aaPredicted RBP7.32□□□□□ -1.24
SPG11-211ENST00000558561 PCDHGC3Q9UN70 934 aa7.32□□□□□ -1.24
SPG11-211ENST00000558561 PCDHB3Q9Y5E6 796 aa7.32□□□□□ -1.24
SPG11-211ENST00000558561 CHD1O14646 1710 aa7.31□□□□□ -1.24
SPG11-211ENST00000558561 FDX1P10109 184 aa7.31□□□□□ -1.24
SPG11-211ENST00000558561 CSPP1Q1MSJ5 1256 aa7.31□□□□□ -1.24
SPG11-211ENST00000558561 GRIPAP1Q4V328 841 aa7.31□□□□□ -1.24
SPG11-211ENST00000558561 BLOC1S3Q6QNY0 202 aa7.31□□□□□ -1.24
SPG11-211ENST00000558561 NYAP1Q6ZVC0 841 aa7.31□□□□□ -1.24
SPG11-211ENST00000558561 CHMP7Q8WUX9 453 aaPredicted RBP7.31□□□□□ -1.24
SPG11-211ENST00000558561 GOPCQ9HD26 462 aa7.31□□□□□ -1.24
SPG11-211ENST00000558561 ATP1B4Q9UN42 357 aaPredicted RBP7.31□□□□□ -1.24
SPG11-211ENST00000558561 SLC27A5Q9Y2P5 690 aa7.31□□□□□ -1.24
SPG11-211ENST00000558561 TOP2BQ02880 1626 aa7.3□□□□□ -1.24
SPG11-211ENST00000558561 SNAPC4Q5SXM2 1469 aa7.3□□□□□ -1.24
SPG11-211ENST00000558561 CLK2P49760 499 aaKnown RBP7.3□□□□□ -1.24
SPG11-211ENST00000558561 COPS2P61201 443 aa7.3□□□□□ -1.24
SPG11-211ENST00000558561 PCMTD1Q96MG8 357 aaPredicted RBP7.3□□□□□ -1.24
SPG11-211ENST00000558561 WDR97A6NE52 1622 aa7.3□□□□□ -1.24
SPG11-211ENST00000558561 GAPVD1Q14C86 1478 aa7.3□□□□□ -1.24
SPG11-211ENST00000558561 SCUBE3Q8IX30 993 aa7.29□□□□□ -1.24
SPG11-211ENST00000558561 BIVM-ERCC5R4GMW8 1640 aa7.29□□□□□ -1.24
SPG11-211ENST00000558561 RUSC2Q8N2Y8 1516 aa7.28□□□□□ -1.24
SPG11-211ENST00000558561 ABCA10Q8WWZ4 1543 aa7.28□□□□□ -1.24
SPG11-211ENST00000558561 GJA5P36382 358 aa7.28□□□□□ -1.24
SPG11-211ENST00000558561 QPCTQ16769 361 aa7.28□□□□□ -1.24
SPG11-211ENST00000558561 TJAP1Q5JTD0 557 aa7.28□□□□□ -1.24
SPG11-211ENST00000558561 FBXO31Q5XUX0 539 aaPredicted RBP7.28□□□□□ -1.24
SPG11-211ENST00000558561 CYB5RLQ6IPT4 315 aa7.28□□□□□ -1.24
SPG11-211ENST00000558561 CABLES1Q8TDN4 633 aa7.28□□□□□ -1.24
SPG11-211ENST00000558561 ZNF516Q92618 1163 aa7.28□□□□□ -1.24
SPG11-211ENST00000558561 SYMPKQ92797 1274 aaKnown RBP7.28□□□□□ -1.24
SPG11-211ENST00000558561 MTRQ99707 1265 aa7.28□□□□□ -1.24
SPG11-211ENST00000558561 NR1I2O75469 434 aa7.27□□□□□ -1.25
SPG11-211ENST00000558561 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.27□□□□□ -1.25
SPG11-211ENST00000558561 GRIN2BQ13224 1484 aa7.27□□□□□ -1.25
SPG11-211ENST00000558561 PBRM1Q86U86 1689 aa7.25□□□□□ -1.25
SPG11-211ENST00000558561 IGF1RP08069 1367 aa7.25□□□□□ -1.25
SPG11-211ENST00000558561 C6orf229H3BNL8 230 aa7.25□□□□□ -1.25
SPG11-211ENST00000558561 LILRB3O75022 631 aa7.25□□□□□ -1.25
SPG11-211ENST00000558561 HRCP23327 699 aa7.25□□□□□ -1.25
SPG11-211ENST00000558561 TUSC1Q2TAM9 212 aa7.25□□□□□ -1.25
SPG11-211ENST00000558561 RTL5Q5HYW3 569 aaPredicted RBP7.25□□□□□ -1.25
SPG11-211ENST00000558561 BRICD5Q6PL45 260 aa7.25□□□□□ -1.25
SPG11-211ENST00000558561 RNF19BQ6ZMZ0 732 aa7.25□□□□□ -1.25
SPG11-211ENST00000558561 IL21Q9HBE4 155 aa7.25□□□□□ -1.25
SPG11-211ENST00000558561 RIMBP3CA6NJZ7 1639 aa7.25□□□□□ -1.25
SPG11-211ENST00000558561 RIMBP3BA6NNM3 1639 aa7.25□□□□□ -1.25
SPG11-211ENST00000558561 ABCA5Q8WWZ7 1642 aa7.25□□□□□ -1.25
SPG11-211ENST00000558561 RIMBP3Q9UFD9 1639 aa7.25□□□□□ -1.25
SPG11-211ENST00000558561 NUTM2BA6NNL0 878 aaPredicted RBP7.24□□□□□ -1.25
SPG11-211ENST00000558561 NUTM2EB1AL46 878 aaPredicted RBP7.24□□□□□ -1.25
SPG11-211ENST00000558561 ZPR1O75312 459 aa7.24□□□□□ -1.25
SPG11-211ENST00000558561 Q3C1V9 767 aa7.24□□□□□ -1.25
SPG11-211ENST00000558561 NUTM2DQ5VT03 806 aaPredicted RBP7.24□□□□□ -1.25
SPG11-211ENST00000558561 NUTM2AQ8IVF1 878 aaPredicted RBP7.24□□□□□ -1.25
SPG11-211ENST00000558561 THAP11Q96EK4 314 aa7.24□□□□□ -1.25
SPG11-211ENST00000558561 TLL1O43897 1013 aa7.23□□□□□ -1.25
SPG11-211ENST00000558561 MTMR2Q13614 643 aa7.23□□□□□ -1.25
SPG11-211ENST00000558561 PRPF38BQ5VTL8 546 aaKnown RBP7.23□□□□□ -1.25
SPG11-211ENST00000558561 NKX2-3Q8TAU0 364 aa7.23□□□□□ -1.25
SPG11-211ENST00000558561 ZBTB3Q9H5J0 574 aa7.23□□□□□ -1.25
SPG11-211ENST00000558561 ARHGEF11O15085 1522 aa7.22□□□□□ -1.25
SPG11-211ENST00000558561 ERCC6L2Q5T890 1561 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms