RNA–Protein interactions for RNA: YOR075W

UFE1, Transcript of t-SNARE protein required for retrograde vesicular traffic, yeast

Gene UFE1, Length 1,041 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UFE1	YOR075W	ANB1	P19211	157 aa		0.56	□□□□□ -2.32
UFE1	YOR075W	RAV2	Q03956	351 aa		0.56	□□□□□ -2.32
UFE1	YOR075W	NAT5	Q08689	176 aa		0.56	□□□□□ -2.32
UFE1	YOR075W	FIT3	Q08907	204 aa		0.56	□□□□□ -2.32
UFE1	YOR075W	PET20	Q99373	253 aa		0.56	□□□□□ -2.32
UFE1	YOR075W	SKI3	P17883	1432 aa	Known RBP	0.55	□□□□□ -2.32
UFE1	YOR075W	SSN2	P38931	1420 aa		0.55	□□□□□ -2.32
UFE1	YOR075W	PEP1	P32319	1579 aa		0.55	□□□□□ -2.32
UFE1	YOR075W	THO2	P53552	1597 aa	Known RBP	0.55	□□□□□ -2.32
UFE1	YOR075W	RME1	P32338	300 aa	Known RBP	0.55	□□□□□ -2.32
UFE1	YOR075W	RAF1	Q06891	181 aa		0.55	□□□□□ -2.32
UFE1	YOR075W	UFD4	P33202	1483 aa		0.54	□□□□□ -2.32
UFE1	YOR075W	RPL40A	P0CH08	128 aa	Known RBP	0.54	□□□□□ -2.32
UFE1	YOR075W	RPL40B	P0CH09	128 aa	Known RBP	0.54	□□□□□ -2.32
UFE1	YOR075W	UTP11	P34247	250 aa	Predicted RBP	0.54	□□□□□ -2.32
UFE1	YOR075W	LSM1	P47017	172 aa	Known RBP	0.54	□□□□□ -2.32
UFE1	YOR075W	EMC4	P53073	190 aa		0.54	□□□□□ -2.32
UFE1	YOR075W	YPL067C	Q02754	198 aa		0.54	□□□□□ -2.32
UFE1	YOR075W	TLG1	Q03322	224 aa		0.54	□□□□□ -2.32
UFE1	YOR075W	PKR1	Q03880	122 aa	Known RBP	0.54	□□□□□ -2.32
UFE1	YOR075W	LTE1	P07866	1435 aa		0.54	□□□□□ -2.32
UFE1	YOR075W	RPO31	P04051	1460 aa		0.54	□□□□□ -2.32
UFE1	YOR075W	BPT1	P14772	1559 aa		0.53	□□□□□ -2.32
UFE1	YOR075W	SFT2	P38166	215 aa		0.53	□□□□□ -2.32
UFE1	YOR075W	LSM8	P47093	109 aa	Known RBP	0.53	□□□□□ -2.32
UFE1	YOR075W	DDP1	Q99321	188 aa	Known RBP	0.53	□□□□□ -2.32
UFE1	YOR075W	TOP2	P06786	1428 aa	Known RBP	0.53	□□□□□ -2.32
UFE1	YOR075W	TRM732	Q03496	1420 aa		0.53	□□□□□ -2.32
UFE1	YOR075W	SCC2	Q04002	1493 aa		0.53	□□□□□ -2.33
UFE1	YOR075W	YPK9	Q12697	1472 aa		0.53	□□□□□ -2.33
UFE1	YOR075W	SIN3	P22579	1536 aa		0.53	□□□□□ -2.33
UFE1	YOR075W	YCF1	P39109	1515 aa	Known RBP	0.53	□□□□□ -2.33
UFE1	YOR075W	ATG2	P53855	1592 aa		0.53	□□□□□ -2.33
UFE1	YOR075W	YBR013C	P38215	129 aa		0.52	□□□□□ -2.33
UFE1	YOR075W	SPP41	P38904	1435 aa		0.52	□□□□□ -2.33
UFE1	YOR075W	TSC11	P40061	1430 aa		0.52	□□□□□ -2.33
UFE1	YOR075W	SNT2	P53127	1403 aa		0.52	□□□□□ -2.33
UFE1	YOR075W	MMS1	Q06211	1407 aa		0.52	□□□□□ -2.33
UFE1	YOR075W	SMC4	Q12267	1418 aa		0.52	□□□□□ -2.33
UFE1	YOR075W	GEA2	P39993	1459 aa	Known RBP	0.52	□□□□□ -2.33
UFE1	YOR075W	MMS22	Q06164	1454 aa		0.52	□□□□□ -2.33
UFE1	YOR075W	DNF1	P32660	1571 aa		0.52	□□□□□ -2.33
UFE1	YOR075W	CDC25	P04821	1589 aa		0.51	□□□□□ -2.33
UFE1	YOR075W	POL1	P13382	1468 aa		0.51	□□□□□ -2.33
UFE1	YOR075W	VPS15	P22219	1454 aa		0.51	□□□□□ -2.33
UFE1	YOR075W	SUI1	P32911	108 aa	Known RBP	0.51	□□□□□ -2.33
UFE1	YOR075W	NUP159	P40477	1460 aa		0.51	□□□□□ -2.33
UFE1	YOR075W	YOR1	P53049	1477 aa		0.51	□□□□□ -2.33
UFE1	YOR075W	SSK2	P53599	1579 aa		0.51	□□□□□ -2.33
UFE1	YOR075W	MYO2	P19524	1574 aa	Known RBP	0.5	□□□□□ -2.33
UFE1	YOR075W	RKR1	Q04781	1562 aa		0.5	□□□□□ -2.33
UFE1	YOR075W	STU1	P38198	1513 aa		0.5	□□□□□ -2.33
UFE1	YOR075W	MYO4	P32492	1471 aa		0.5	□□□□□ -2.33
UFE1	YOR075W	AIM4	P38305	123 aa	Predicted RBP	0.5	□□□□□ -2.33
UFE1	YOR075W	YAP3	P38749	330 aa		0.5	□□□□□ -2.33
UFE1	YOR075W	MIC27	P50945	234 aa		0.5	□□□□□ -2.33
UFE1	YOR075W	YOR385W	Q08909	290 aa		0.5	□□□□□ -2.33
UFE1	YOR075W	ESP1	Q03018	1630 aa		0.49	□□□□□ -2.33
UFE1	YOR075W	VTH1	P40438	1549 aa		0.49	□□□□□ -2.33
UFE1	YOR075W	VTH2	P40890	1549 aa		0.49	□□□□□ -2.33
UFE1	YOR075W	IQG1	Q12280	1495 aa		0.49	□□□□□ -2.33
UFE1	YOR075W	BNI1	P41832	1953 aa		0.49	□□□□□ -2.33
UFE1	YOR075W	MOG1	P47123	218 aa		0.49	□□□□□ -2.33
UFE1	YOR075W	SPG1	P50088	95 aa		0.49	□□□□□ -2.33
UFE1	YOR075W	YGL149W	P53116	101 aa		0.49	□□□□□ -2.33
UFE1	YOR075W	SMD2	Q06217	110 aa	Known RBP	0.49	□□□□□ -2.33
UFE1	YOR075W	RPA190	P10964	1664 aa	Known RBP	0.49	□□□□□ -2.33
UFE1	YOR075W	IRC20	Q06554	1556 aa		0.49	□□□□□ -2.33
UFE1	YOR075W	SNQ2	P32568	1501 aa	Known RBP	0.48	□□□□□ -2.33
UFE1	YOR075W	PDR12	Q02785	1511 aa		0.48	□□□□□ -2.33
UFE1	YOR075W	GDB1	Q06625	1536 aa		0.48	□□□□□ -2.33
UFE1	YOR075W	CAT8	P39113	1433 aa		0.48	□□□□□ -2.33
UFE1	YOR075W	YSP2	Q06681	1438 aa		0.48	□□□□□ -2.33
UFE1	YOR075W	PFY1	P07274	126 aa		0.48	□□□□□ -2.33
UFE1	YOR075W	MRPL44	P19956	98 aa		0.48	□□□□□ -2.33
UFE1	YOR075W	YDR366C	P87287	132 aa		0.48	□□□□□ -2.33
UFE1	YOR075W	ESC1	Q03661	1658 aa	Known RBP	0.48	□□□□□ -2.33
UFE1	YOR075W	PDR10	P51533	1564 aa		0.48	□□□□□ -2.33
UFE1	YOR075W	NUP170	P38181	1502 aa		0.48	□□□□□ -2.33
UFE1	YOR075W	PDR15	Q04182	1529 aa	Known RBP	0.48	□□□□□ -2.33
UFE1	YOR075W	TY3B-G	Q99315	1547 aa		0.48	□□□□□ -2.33
UFE1	YOR075W	SRB8	P25648	1427 aa		0.47	□□□□□ -2.33
UFE1	YOR075W	GEA1	P47102	1408 aa	Predicted RBP	0.47	□□□□□ -2.33
UFE1	YOR075W	BUD3	P25558	1636 aa		0.47	□□□□□ -2.33
UFE1	YOR075W	PET54	P10834	293 aa		0.47	□□□□□ -2.33
UFE1	YOR075W	ARC19	P33204	171 aa	Known RBP	0.47	□□□□□ -2.33
UFE1	YOR075W	BRP1	P53194	125 aa		0.47	□□□□□ -2.33
UFE1	YOR075W	ARO1	P08566	1588 aa	Known RBP	0.47	□□□□□ -2.33
UFE1	YOR075W	TY1B-BR	Q12193	1756 aa		0.47	□□□□□ -2.33
UFE1	YOR075W	TY1B-GR3	Q12316	1755 aa		0.47	□□□□□ -2.33
UFE1	YOR075W	TY1B-OR	Q92393	1755 aa		0.47	□□□□□ -2.33
UFE1	YOR075W	KRE5	P22023	1365 aa		0.46	□□□□□ -2.34
UFE1	YOR075W	ULS1	Q08562	1619 aa		0.46	□□□□□ -2.34
UFE1	YOR075W	YOR093C	Q12275	1648 aa		0.46	□□□□□ -2.34
UFE1	YOR075W	DNF2	Q12675	1612 aa		0.46	□□□□□ -2.34
UFE1	YOR075W	QCR6	P00127	147 aa		0.46	□□□□□ -2.34
UFE1	YOR075W	RPS1A	P33442	255 aa	Known RBP	0.46	□□□□□ -2.34
UFE1	YOR075W	MED11	Q99278	115 aa		0.46	□□□□□ -2.34
UFE1	YOR075W	HAP1	P0CE41	1502 aa		0.46	□□□□□ -2.34
UFE1	YOR075W	PDR5	P33302	1511 aa	Known RBP	0.46	□□□□□ -2.34

Retrieved 100 of 5,963 RNA–protein pairs in 8.8 ms