RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W OST2P46964 130 aa3.49□□□□□ -1.85
SSH4YKL124W CAB4P53332 305 aa3.49□□□□□ -1.85
SSH4YKL124W YCL001W-AP87012 153 aa3.49□□□□□ -1.85
SSH4YKL124W VTS1Q08831 523 aaKnown RBP RIP-Chip data3.49□□□□□ -1.85not detected
SSH4YKL124W PRM3Q08931 133 aa3.49□□□□□ -1.85
SSH4YKL124W RPN13O13563 156 aa3.48□□□□□ -1.85
SSH4YKL124W CPR1P14832 162 aaKnown RBP3.48□□□□□ -1.85
SSH4YKL124W STF2P16965 84 aa3.48□□□□□ -1.85
SSH4YKL124W PDC2P32896 925 aa3.48□□□□□ -1.85
SSH4YKL124W YKR070WP36151 352 aaKnown RBP3.48□□□□□ -1.85
SSH4YKL124W URM1P40554 99 aaPredicted RBP3.48□□□□□ -1.85
SSH4YKL124W YML122CQ03207 126 aa3.48□□□□□ -1.85
SSH4YKL124W SHH4Q06236 168 aa3.48□□□□□ -1.85
SSH4YKL124W RAD28Q12021 506 aa3.48□□□□□ -1.85
SSH4YKL124W RPS8AP0CX39 200 aaKnown RBP3.47□□□□□ -1.85
SSH4YKL124W RPS8BP0CX40 200 aaKnown RBP3.47□□□□□ -1.85
SSH4YKL124W YHR212W-AP0CX91 67 aa3.47□□□□□ -1.85
SSH4YKL124W YBL081WP38180 368 aaKnown RBP3.47□□□□□ -1.85
SSH4YKL124W CSH1P38287 376 aa3.47□□□□□ -1.85
SSH4YKL124W SNU13P39990 126 aaKnown RBP3.47□□□□□ -1.85
SSH4YKL124W YPL073CP40323 161 aa3.47□□□□□ -1.85
SSH4YKL124W YHP1Q04116 353 aa3.47□□□□□ -1.85
SSH4YKL124W YLR224WQ05947 369 aa3.47□□□□□ -1.85
SSH4YKL124W YOL160WQ08321 113 aa3.47□□□□□ -1.85
SSH4YKL124W PRR2Q12310 699 aa3.47□□□□□ -1.85
SSH4YKL124W NOP1P15646 327 aaKnown RBP3.47□□□□□ -1.85
SSH4YKL124W MRP17P28778 131 aa3.47□□□□□ -1.85
SSH4YKL124W SHB17P36136 271 aaKnown RBP3.47□□□□□ -1.85
SSH4YKL124W ERV15P38312 142 aa3.47□□□□□ -1.85
SSH4YKL124W SFT1P43682 97 aa3.47□□□□□ -1.85
SSH4YKL124W ARP3P47117 449 aaKnown RBP3.47□□□□□ -1.85
SSH4YKL124W BUL1P48524 976 aa3.47□□□□□ -1.85
SSH4YKL124W AIM11P87275 137 aa3.47□□□□□ -1.85
SSH4YKL124W VPS28Q02767 242 aa3.47□□□□□ -1.85
SSH4YKL124W ELC1Q03071 99 aa3.47□□□□□ -1.85
SSH4YKL124W FSH2Q05015 223 aa3.47□□□□□ -1.85
SSH4YKL124W YGL258W-AQ3E740 77 aa3.47□□□□□ -1.85
SSH4YKL124W COQ3P27680 312 aa3.46□□□□□ -1.86
SSH4YKL124W MRPL38P35996 138 aaPredicted RBP3.46□□□□□ -1.86
SSH4YKL124W LST8P41318 303 aa3.46□□□□□ -1.86
SSH4YKL124W NSE4P43124 402 aa3.46□□□□□ -1.86
SSH4YKL124W YGL230CP53074 147 aa3.46□□□□□ -1.86
SSH4YKL124W CRH1P53301 507 aa3.46□□□□□ -1.86
SSH4YKL124W MRPS16Q02608 121 aa3.46□□□□□ -1.86
SSH4YKL124W YLR042CQ07990 161 aa3.46□□□□□ -1.86
SSH4YKL124W DGA1Q08650 418 aa3.46□□□□□ -1.86
SSH4YKL124W ATX2Q12067 313 aa3.46□□□□□ -1.86
SSH4YKL124W YPR014CQ6B0W2 109 aa3.46□□□□□ -1.86
SSH4YKL124W YHR139C-AO13536 103 aa3.45□□□□□ -1.86
SSH4YKL124W APS1P35181 156 aa3.45□□□□□ -1.86
SSH4YKL124W RPL13BP40212 199 aaKnown RBP3.45□□□□□ -1.86
SSH4YKL124W YGR039WP53225 103 aa3.45□□□□□ -1.86
SSH4YKL124W YDR366CP87287 132 aa3.45□□□□□ -1.86
SSH4YKL124W GRH1Q04410 372 aaKnown RBP3.45□□□□□ -1.86
SSH4YKL124W RPL13AQ12690 199 aaPredicted RBP3.45□□□□□ -1.86
SSH4YKL124W SOD1P00445 154 aaKnown RBP3.44□□□□□ -1.86
SSH4YKL124W MRPL44P19956 98 aa3.44□□□□□ -1.86
SSH4YKL124W SDH4P37298 181 aa3.44□□□□□ -1.86
SSH4YKL124W PEX17P40155 199 aa3.44□□□□□ -1.86
SSH4YKL124W DFG10P40526 253 aa3.44□□□□□ -1.86
SSH4YKL124W ERV14P53173 138 aa3.44□□□□□ -1.86
SSH4YKL124W YGR050CP53231 118 aa3.44□□□□□ -1.86
SSH4YKL124W YPR063CQ12160 140 aa3.44□□□□□ -1.86
SSH4YKL124W YPS3Q12303 508 aa3.44□□□□□ -1.86
SSH4YKL124W YNL277W-AQ3E7Z0 62 aa3.44□□□□□ -1.86
SSH4YKL124W SPO13P23624 291 aa3.44□□□□□ -1.86
SSH4YKL124W YCR007CP25354 239 aa3.44□□□□□ -1.86
SSH4YKL124W YHR130CP38834 111 aa3.44□□□□□ -1.86
SSH4YKL124W PRE5P40302 234 aaKnown RBP3.44□□□□□ -1.86
SSH4YKL124W EST3Q03096 181 aa3.44□□□□□ -1.86
SSH4YKL124W ATG5Q12380 294 aa3.44□□□□□ -1.86
SSH4YKL124W ANB1P19211 157 aa3.43□□□□□ -1.86
SSH4YKL124W ARO2P28777 376 aaKnown RBP3.43□□□□□ -1.86
SSH4YKL124W ALK2P32789 676 aaPredicted RBP3.43□□□□□ -1.86
SSH4YKL124W YBR090CP38253 122 aa3.43□□□□□ -1.86
SSH4YKL124W YHR140WP38842 239 aa3.43□□□□□ -1.86
SSH4YKL124W MPC2P38857 129 aa3.43□□□□□ -1.86
SSH4YKL124W YIL024CP40543 189 aa3.43□□□□□ -1.86
SSH4YKL124W YPI1P43587 155 aa3.43□□□□□ -1.86
SSH4YKL124W YGR026WP53217 278 aa3.43□□□□□ -1.86
SSH4YKL124W HYP2P23301 157 aaKnown RBP3.42□□□□□ -1.86
SSH4YKL124W NSA2P40078 261 aaKnown RBP3.42□□□□□ -1.86
SSH4YKL124W YIR035CP40579 254 aa3.42□□□□□ -1.86
SSH4YKL124W BET5Q03630 159 aa3.42□□□□□ -1.86
SSH4YKL124W YLR281CQ05863 155 aa3.42□□□□□ -1.86
SSH4YKL124W NAT3Q06504 195 aa3.42□□□□□ -1.86
SSH4YKL124W ISD11Q6Q560 94 aa3.42□□□□□ -1.86
SSH4YKL124W TIR1P10863 254 aa3.41□□□□□ -1.86
SSH4YKL124W UBC5P15732 148 aa3.41□□□□□ -1.86
SSH4YKL124W FPR2P32472 135 aa3.41□□□□□ -1.86
SSH4YKL124W RPL14AP36105 138 aaKnown RBP3.41□□□□□ -1.86
SSH4YKL124W YBL071CP38185 102 aa3.41□□□□□ -1.86
SSH4YKL124W RRT1P38192 103 aa3.41□□□□□ -1.86
SSH4YKL124W RPL14BP38754 138 aaKnown RBP3.41□□□□□ -1.86
SSH4YKL124W PET8P38921 284 aa3.41□□□□□ -1.86
SSH4YKL124W YAR068WP39564 161 aa3.41□□□□□ -1.86
SSH4YKL124W SBH1P52870 82 aa3.41□□□□□ -1.86
SSH4YKL124W SWT21P53873 357 aaPredicted RBP3.41□□□□□ -1.86
SSH4YKL124W YDR274CP87283 123 aa3.41□□□□□ -1.86
SSH4YKL124W FCF1Q05498 189 aaPredicted RBP3.41□□□□□ -1.86
Retrieved 100 of 5,963 RNA–protein pairs in 7.2 ms