RNA–Protein interactions for RNA: YFL009W

CDC4, Transcript of F-box protein required for both the G1/S and G2/M phase transitions, yeast

Gene CDC4, Length 2,340 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC4	YFL009W	PHD1	P36093	366 aa		4.27	□□□□□ -1.73
CDC4	YFL009W	YGL118C	P53132	145 aa		4.27	□□□□□ -1.73
CDC4	YFL009W	YLR296W	Q05898	108 aa		4.27	□□□□□ -1.73
CDC4	YFL009W	OPI3	P05375	206 aa		4.26	□□□□□ -1.73
CDC4	YFL009W	RPL7A	P05737	244 aa	Known RBP	4.26	□□□□□ -1.73
CDC4	YFL009W	INO4	P13902	151 aa		4.26	□□□□□ -1.73
CDC4	YFL009W	FCY2	P17064	533 aa		4.26	□□□□□ -1.73
CDC4	YFL009W	QCR9	P22289	66 aa		4.26	□□□□□ -1.73
CDC4	YFL009W	YOR062C	P36025	268 aa		4.26	□□□□□ -1.73
CDC4	YFL009W	SWD2	P36104	329 aa	Predicted RBP	4.26	□□□□□ -1.73
CDC4	YFL009W	TRM7	P38238	310 aa	Known RBP	4.26	□□□□□ -1.73
CDC4	YFL009W	ANS1	P38832	159 aa		4.26	□□□□□ -1.73
CDC4	YFL009W	CYB5	P40312	120 aa		4.26	□□□□□ -1.73
CDC4	YFL009W	YTH1	Q06102	208 aa	Predicted RBP	4.26	□□□□□ -1.73
CDC4	YFL009W	RPL35A	P0CX84	120 aa	Known RBP	4.26	□□□□□ -1.73
CDC4	YFL009W	RPL35B	P0CX85	120 aa	Known RBP	4.26	□□□□□ -1.73
CDC4	YFL009W	PDE1	P22434	369 aa		4.26	□□□□□ -1.73
CDC4	YFL009W	PAD1	P33751	242 aa	Known RBP RIP-Chip data	4.26	□□□□□ -1.73	not detected
CDC4	YFL009W	MSO1	P53604	210 aa	Known RBP	4.26	□□□□□ -1.73
CDC4	YFL009W	ATG4	P53867	494 aa		4.26	□□□□□ -1.73
CDC4	YFL009W	YPL264C	Q08980	353 aa		4.26	□□□□□ -1.73
CDC4	YFL009W	YCR024C-B	Q3E7Z8	88 aa		4.26	□□□□□ -1.73
CDC4	YFL009W	HEM4	P06174	275 aa		4.25	□□□□□ -1.73
CDC4	YFL009W	MRS1	P07266	363 aa		4.25	□□□□□ -1.73
CDC4	YFL009W	YJL213W	P40896	331 aa		4.25	□□□□□ -1.73
CDC4	YFL009W	YIP3	P53633	176 aa		4.25	□□□□□ -1.73
CDC4	YFL009W	NAT3	Q06504	195 aa		4.25	□□□□□ -1.73
CDC4	YFL009W	HMRA1	P0CY11	126 aa		4.24	□□□□□ -1.73
CDC4	YFL009W	BET2	P20133	325 aa		4.24	□□□□□ -1.73
CDC4	YFL009W	ATX1	P38636	73 aa		4.24	□□□□□ -1.73
CDC4	YFL009W	ELO1	P39540	310 aa		4.24	□□□□□ -1.73
CDC4	YFL009W	SHO1	P40073	367 aa		4.24	□□□□□ -1.73
CDC4	YFL009W	YFL065C	P43539	102 aa		4.24	□□□□□ -1.73
CDC4	YFL009W	COQ5	P49017	307 aa		4.24	□□□□□ -1.73
CDC4	YFL009W	VEL1	P53058	206 aa		4.24	□□□□□ -1.73
CDC4	YFL009W	PET191	Q02772	108 aa		4.24	□□□□□ -1.73
CDC4	YFL009W	BET5	Q03630	159 aa		4.24	□□□□□ -1.73
CDC4	YFL009W	YPR203W	Q08994	102 aa		4.24	□□□□□ -1.73
CDC4	YFL009W	SMT3	Q12306	101 aa	Known RBP	4.24	□□□□□ -1.73
CDC4	YFL009W	PRP46	Q12417	451 aa	Predicted RBP	4.24	□□□□□ -1.73
CDC4	YFL009W	YLR111W	Q12528	110 aa		4.24	□□□□□ -1.73
CDC4	YFL009W	YOS1	Q3E834	85 aa		4.24	□□□□□ -1.73
CDC4	YFL009W	YLL053C	P0CD98	152 aa		4.24	□□□□□ -1.73
CDC4	YFL009W	RPL1A	P0CX43	217 aa	Known RBP	4.24	□□□□□ -1.73
CDC4	YFL009W	RPL1B	P0CX44	217 aa	Known RBP	4.24	□□□□□ -1.73
CDC4	YFL009W	ERG2	P32352	222 aa		4.24	□□□□□ -1.73
CDC4	YFL009W	UGX2	P32772	223 aa		4.24	□□□□□ -1.73
CDC4	YFL009W	DUO1	P53168	247 aa	Known RBP	4.24	□□□□□ -1.73
CDC4	YFL009W	TPC1	P53257	314 aa		4.24	□□□□□ -1.73
CDC4	YFL009W	YFH1	Q07540	174 aa		4.24	□□□□□ -1.73
CDC4	YFL009W	YOL029C	Q08187	201 aa		4.24	□□□□□ -1.73
CDC4	YFL009W	VAR1	P02381	398 aa		4.23	□□□□□ -1.73
CDC4	YFL009W	RAD6	P06104	172 aa		4.23	□□□□□ -1.73
CDC4	YFL009W	RPB8	P20436	146 aa		4.23	□□□□□ -1.73
CDC4	YFL009W	TIF34	P40217	347 aa	Known RBP	4.23	□□□□□ -1.73
CDC4	YFL009W	BRR6	P53062	197 aa		4.23	□□□□□ -1.73
CDC4	YFL009W	RPC11	Q04307	110 aa	Predicted RBP	4.23	□□□□□ -1.73
CDC4	YFL009W	LPP1	Q04396	274 aa		4.23	□□□□□ -1.73
CDC4	YFL009W	SOD1	P00445	154 aa	Known RBP	4.23	□□□□□ -1.73
CDC4	YFL009W	RPL27A	P0C2H6	136 aa	Known RBP	4.23	□□□□□ -1.73
CDC4	YFL009W	RPL27B	P0C2H7	136 aa	Known RBP	4.23	□□□□□ -1.73
CDC4	YFL009W	YKR104W	P0CE69	306 aa		4.23	□□□□□ -1.73
CDC4	YFL009W	FRM2	P37261	193 aa		4.23	□□□□□ -1.73
CDC4	YFL009W	ECM14	P38836	430 aa		4.23	□□□□□ -1.73
CDC4	YFL009W	SRP14	P38985	146 aa		4.23	□□□□□ -1.73
CDC4	YFL009W	YAR068W	P39564	161 aa		4.23	□□□□□ -1.73
CDC4	YFL009W	ARP3	P47117	449 aa	Known RBP	4.23	□□□□□ -1.73
CDC4	YFL009W	YDL186W	P48568	277 aa		4.23	□□□□□ -1.73
CDC4	YFL009W	YPL039W	Q03080	316 aa		4.23	□□□□□ -1.73
CDC4	YFL009W	VPS71	Q03433	280 aa		4.23	□□□□□ -1.73
CDC4	YFL009W	SCS22	Q6Q595	175 aa		4.23	□□□□□ -1.73
CDC4	YFL009W	GAL7	P08431	366 aa		4.22	□□□□□ -1.73
CDC4	YFL009W	RPL20A	P0CX23	172 aa	Known RBP	4.22	□□□□□ -1.73
CDC4	YFL009W	RPL20B	P0CX24	172 aa	Predicted RBP	4.22	□□□□□ -1.73
CDC4	YFL009W	ERV1	P27882	189 aa		4.22	□□□□□ -1.73
CDC4	YFL009W	PRS4	P38063	326 aa	Predicted RBP	4.22	□□□□□ -1.73
CDC4	YFL009W	CRH1	P53301	507 aa		4.22	□□□□□ -1.73
CDC4	YFL009W	MRPL1	Q04599	285 aa		4.22	□□□□□ -1.73
CDC4	YFL009W	LIP2	Q06005	328 aa		4.22	□□□□□ -1.73
CDC4	YFL009W	KRE1	P17260	313 aa		4.22	□□□□□ -1.73
CDC4	YFL009W	PCL1	P24867	279 aa		4.22	□□□□□ -1.73
CDC4	YFL009W	OST2	P46964	130 aa		4.22	□□□□□ -1.73
CDC4	YFL009W	GEP7	P53171	287 aa		4.22	□□□□□ -1.73
CDC4	YFL009W	MPP6	P53725	186 aa	Predicted RBP	4.22	□□□□□ -1.73
CDC4	YFL009W	LDS2	Q08218	356 aa		4.22	□□□□□ -1.73
CDC4	YFL009W	DGA1	Q08650	418 aa		4.22	□□□□□ -1.73
CDC4	YFL009W	DER1	P38307	211 aa		4.21	□□□□□ -1.74
CDC4	YFL009W	YJL193W	P39542	402 aa		4.21	□□□□□ -1.74
CDC4	YFL009W	YNL208W	P40159	199 aa	Known RBP	4.21	□□□□□ -1.74
CDC4	YFL009W	YIL089W	P40500	205 aa		4.21	□□□□□ -1.74
CDC4	YFL009W	RPS28B	P0C0X0	67 aa	Known RBP	4.21	□□□□□ -1.74
CDC4	YFL009W	REC114	P32841	428 aa		4.21	□□□□□ -1.74
CDC4	YFL009W	RPB7	P34087	171 aa		4.21	□□□□□ -1.74
CDC4	YFL009W	PAM17	P36147	197 aa		4.21	□□□□□ -1.74
CDC4	YFL009W	YAL037W	P39728	267 aa		4.21	□□□□□ -1.74
CDC4	YFL009W	DPP1	Q05521	289 aa		4.21	□□□□□ -1.74
CDC4	YFL009W	SWT1	Q12104	458 aa		4.21	□□□□□ -1.74
CDC4	YFL009W	RPS28A	Q3E7X9	67 aa	Predicted RBP	4.21	□□□□□ -1.74
CDC4	YFL009W	YLR365W	Q7LIF2	110 aa		4.21	□□□□□ -1.74
CDC4	YFL009W	MSI1	P13712	422 aa		4.2	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 30.5 ms