RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	NSA1	P53136	463 aa	Predicted RBP	3.13	□□□□□ -1.91
UBX5	YDR330W	EST3	Q03096	181 aa		3.13	□□□□□ -1.91
UBX5	YDR330W	POM33	Q12164	279 aa		3.13	□□□□□ -1.91
UBX5	YDR330W	QCR2	P07257	368 aa		3.12	□□□□□ -1.91
UBX5	YDR330W	CNB1	P25296	175 aa		3.12	□□□□□ -1.91
UBX5	YDR330W	CDC50	P25656	391 aa		3.12	□□□□□ -1.91
UBX5	YDR330W	INO2	P26798	304 aa		3.12	□□□□□ -1.91
UBX5	YDR330W	MCH2	P36032	473 aa		3.12	□□□□□ -1.91
UBX5	YDR330W	FIG1	P38224	298 aa		3.12	□□□□□ -1.91
UBX5	YDR330W	MIG3	P39943	394 aa		3.12	□□□□□ -1.91
UBX5	YDR330W	GNA1	P43577	159 aa	Predicted RBP	3.12	□□□□□ -1.91
UBX5	YDR330W	SNN1	P48232	102 aa		3.12	□□□□□ -1.91
UBX5	YDR330W	UFD1	P53044	361 aa		3.12	□□□□□ -1.91
UBX5	YDR330W	ACT1	P60010	375 aa	Known RBP	3.12	□□□□□ -1.91
UBX5	YDR330W	THI74	Q04083	370 aa		3.12	□□□□□ -1.91
UBX5	YDR330W	RRT7	Q07829	113 aa		3.12	□□□□□ -1.91
UBX5	YDR330W	USB1	Q12208	290 aa	Known RBP	3.12	□□□□□ -1.91
UBX5	YDR330W	HUT1	Q12520	339 aa		3.12	□□□□□ -1.91
UBX5	YDR330W	COX2	P00410	251 aa		3.11	□□□□□ -1.91
UBX5	YDR330W	CBP6	P07253	162 aa	Predicted RBP	3.11	□□□□□ -1.91
UBX5	YDR330W	UBI4	P0CG63	381 aa	Known RBP	3.11	□□□□□ -1.91
UBX5	YDR330W	RPL40A	P0CH08	128 aa	Known RBP	3.11	□□□□□ -1.91
UBX5	YDR330W	RPL40B	P0CH09	128 aa	Known RBP	3.11	□□□□□ -1.91
UBX5	YDR330W	PEX4	P29340	183 aa		3.11	□□□□□ -1.91
UBX5	YDR330W	SRB6	P32570	121 aa		3.11	□□□□□ -1.91
UBX5	YDR330W	RPL13B	P40212	199 aa	Known RBP	3.11	□□□□□ -1.91
UBX5	YDR330W	YJL118W	P47022	219 aa		3.11	□□□□□ -1.91
UBX5	YDR330W	LIP2	Q06005	328 aa		3.11	□□□□□ -1.91
UBX5	YDR330W	YCT1	Q12235	531 aa		3.11	□□□□□ -1.91
UBX5	YDR330W	RPL13A	Q12690	199 aa	Predicted RBP	3.11	□□□□□ -1.91
UBX5	YDR330W	YLR146W-A	Q2V2P1	62 aa		3.11	□□□□□ -1.91
UBX5	YDR330W	YLR365W	Q7LIF2	110 aa		3.11	□□□□□ -1.91
UBX5	YDR330W	BLM10	P43583	2143 aa		3.11	□□□□□ -1.91
UBX5	YDR330W	FMP27	Q06179	2628 aa		3.1	□□□□□ -1.91
UBX5	YDR330W	HFA1	P32874	2273 aa		3.1	□□□□□ -1.91
UBX5	YDR330W	ADH2	P00331	348 aa	Known RBP	3.1	□□□□□ -1.91
UBX5	YDR330W	ZRC1	P20107	442 aa		3.1	□□□□□ -1.91
UBX5	YDR330W	YCR101C	P25607	182 aa		3.1	□□□□□ -1.91
UBX5	YDR330W	OCH1	P31755	480 aa		3.1	□□□□□ -1.91
UBX5	YDR330W	YEA6	P39953	335 aa		3.1	□□□□□ -1.91
UBX5	YDR330W	EMC5	P40540	141 aa		3.1	□□□□□ -1.91
UBX5	YDR330W	YAR1	P46683	200 aa		3.1	□□□□□ -1.91
UBX5	YDR330W	UBC13	P52490	153 aa		3.1	□□□□□ -1.91
UBX5	YDR330W	FMP41	P53889	259 aa	Known RBP	3.1	□□□□□ -1.91
UBX5	YDR330W	VPS28	Q02767	242 aa		3.1	□□□□□ -1.91
UBX5	YDR330W	YDR391C	Q04170	232 aa		3.1	□□□□□ -1.91
UBX5	YDR330W	ADH6	Q04894	360 aa	Known RBP	3.1	□□□□□ -1.91
UBX5	YDR330W	RFU1	Q08003	200 aa		3.1	□□□□□ -1.91
UBX5	YDR330W	FCF2	Q12035	217 aa	Predicted RBP	3.1	□□□□□ -1.91
UBX5	YDR330W	YDL180W	Q12301	547 aa		3.1	□□□□□ -1.91
UBX5	YDR330W	VMA9	Q3E7B6	73 aa		3.1	□□□□□ -1.91
UBX5	YDR330W	Q0144	Q9ZZW2	109 aa		3.1	□□□□□ -1.91
UBX5	YDR330W	CDC39	P25655	2108 aa	Known RBP	3.1	□□□□□ -1.91
UBX5	YDR330W	RPL25	P04456	142 aa	Known RBP	3.09	□□□□□ -1.91
UBX5	YDR330W	LDB16	P25587	256 aa		3.09	□□□□□ -1.91
UBX5	YDR330W	RPB7	P34087	171 aa		3.09	□□□□□ -1.91
UBX5	YDR330W	MRPL39	P36533	70 aa		3.09	□□□□□ -1.91
UBX5	YDR330W	CCS1	P40202	249 aa	Known RBP	3.09	□□□□□ -1.91
UBX5	YDR330W	HAM1	P47119	197 aa	Known RBP	3.09	□□□□□ -1.91
UBX5	YDR330W	MCM22	P47167	239 aa		3.09	□□□□□ -1.91
UBX5	YDR330W	SLX9	P53251	210 aa	Predicted RBP	3.09	□□□□□ -1.91
UBX5	YDR330W	CPD1	P53314	239 aa		3.09	□□□□□ -1.91
UBX5	YDR330W	APJ1	P53940	528 aa		3.09	□□□□□ -1.91
UBX5	YDR330W	YCL001W-A	P87012	153 aa		3.09	□□□□□ -1.91
UBX5	YDR330W	YTH1	Q06102	208 aa	Predicted RBP	3.09	□□□□□ -1.91
UBX5	YDR330W	YOR186W	Q08560	144 aa		3.09	□□□□□ -1.91
UBX5	YDR330W	RPL21B	Q12672	160 aa	Known RBP	3.09	□□□□□ -1.91
UBX5	YDR330W	YPR108W-A	Q3E7B3	70 aa		3.09	□□□□□ -1.91
UBX5	YDR330W	MRPL20	P22354	195 aa	Predicted RBP	3.09	□□□□□ -1.92
UBX5	YDR330W	MRS4	P23500	304 aa		3.09	□□□□□ -1.92
UBX5	YDR330W	ERG2	P32352	222 aa		3.09	□□□□□ -1.92
UBX5	YDR330W	SWD3	P38123	315 aa		3.09	□□□□□ -1.92
UBX5	YDR330W	ERV15	P38312	142 aa		3.09	□□□□□ -1.92
UBX5	YDR330W	SOL1	P50278	321 aa		3.09	□□□□□ -1.92
UBX5	YDR330W	RCE1	Q03530	315 aa		3.09	□□□□□ -1.92
UBX5	YDR330W	SDO1	Q07953	250 aa	Known RBP	3.09	□□□□□ -1.92
UBX5	YDR330W	PCC1	Q3E833	88 aa		3.09	□□□□□ -1.92
UBX5	YDR330W	SEC16	P48415	2195 aa	Known RBP	3.08	□□□□□ -1.92
UBX5	YDR330W	ACC1	Q00955	2233 aa	Known RBP	3.08	□□□□□ -1.92
UBX5	YDR330W	BGL2	P15703	313 aa	Known RBP	3.08	□□□□□ -1.92
UBX5	YDR330W	ATG15	P25641	520 aa		3.08	□□□□□ -1.92
UBX5	YDR330W	ECM31	P38122	312 aa		3.08	□□□□□ -1.92
UBX5	YDR330W	SHG1	P38337	142 aa		3.08	□□□□□ -1.92
UBX5	YDR330W	PRS2	P38620	318 aa	Known RBP	3.08	□□□□□ -1.92
UBX5	YDR330W	YEA4	P40004	342 aa		3.08	□□□□□ -1.92
UBX5	YDR330W	SPC25	P40014	221 aa		3.08	□□□□□ -1.92
UBX5	YDR330W	YER084W	P40057	128 aa		3.08	□□□□□ -1.92
UBX5	YDR330W	RFC2	P40348	353 aa		3.08	□□□□□ -1.92
UBX5	YDR330W	IGD1	P43598	195 aa		3.08	□□□□□ -1.92
UBX5	YDR330W	HIT1	P46973	164 aa		3.08	□□□□□ -1.92
UBX5	YDR330W	YJR012C	P47087	207 aa		3.08	□□□□□ -1.92
UBX5	YDR330W	YJR056C	P47115	236 aa		3.08	□□□□□ -1.92
UBX5	YDR330W	HHO1	P53551	258 aa		3.08	□□□□□ -1.92
UBX5	YDR330W	RSM10	Q03201	203 aa		3.08	□□□□□ -1.92
UBX5	YDR330W	MRPS17	Q03246	237 aa	Predicted RBP	3.08	□□□□□ -1.92
UBX5	YDR330W	YMR082C	Q04276	118 aa		3.08	□□□□□ -1.92
UBX5	YDR330W	PIN3	Q06449	215 aa		3.08	□□□□□ -1.92
UBX5	YDR330W	FIT3	Q08907	204 aa		3.08	□□□□□ -1.92
UBX5	YDR330W	MPD1	Q12404	318 aa	Known RBP	3.08	□□□□□ -1.92
UBX5	YDR330W	COX19	Q3E731	98 aa		3.08	□□□□□ -1.92

Retrieved 100 of 5,963 RNA–protein pairs in 21.3 ms